CmoCh02G004110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	organ-specific protein P4-like
Location	Cmo_Chr02: 2125528 .. 2127097 (-)
RNA-Seq Expression	CmoCh02G004110
Synteny	CmoCh02G004110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTTTCTTATCCTGGTAAATTTTTCACATTCATAACTCGTTTTAACATATTTTGTTCTCGGTATCACGTTTTTTCTAAACGATAAAAGTGATTTTTGGACATTTTATTCTCAAACGTCTTTTTTTTTTTACTACGAAAGGTAAAACGTATCGATAATGTTATTACATTGAACGGTGCGTTAATCCTTTGAATCTAGTACCAACGAGTATCGTTTCTCCTAGAACAACGTTGTCTTTCAGATCTTTCAACTAGACAAGCTGCTTTTGCTAAAACTTGAGCGGTTTTCTAAAAACTTGTTTTGGGTATGAAAAAAATGAGTATTTAGAGATGTTTTTGTTATTCCTAATACTATGGCTCGGCTACTGATCGCTTCTTTTAAAGGACACCTTGTTTGTTTCACTTACAACAGTTAGTTCTCCCGGTCAAAAAAAACATTAGACATTTCATTTTATGAAACCAACGCTCTTGACATTAGTTGACGTACAAGAATTTATATATGTCGATATCGATCTCCACCCCTTAACCTTTTTTATCTTATTAACTAAAGAAACAAGACTTTGAACGGTAGTTAGTTCAACACCGATAATAAATTTTTAAAGAATTCCGAAGCACCCATCCCAAGGTACAATTCCCAAAATCCCTAGAATATATATATTTATTTATTTAATTTCATAATTATTTTTAATTATTTATTCTTCCGATACTGTTAAAAATAATTTTTTATTTTTAAGTTAAATTTTTGAAAATGAACAAATAGATTTTTGACGACATTTTATTTTATTAGAAACAAAAAATTGAATAAATAACTTAGAACAACTCGAATTAACTTAATCGTTTGGGTTGAAAAAATTTACAACTGAAACAATTAGGTTGAGTCTAAATAACGTCACAACCTGACCCAACTCGACCCGACTAAATCCAGCTTGAACAATTGAGTTGAATCTGAAAAAATATTCCAACCCGACCAAATTCAATCCACGTACGCCTTTTTTTTTTTTTTTTTGGTACTGATTTTGGGCATCACAGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGATCATCATAGCATCCTGTCCACCATGACTTGTGTCAAGAGGCTTCATGTTTAGTTTGTGTAAATTATTATAGCTCTCGAATTGATATGGGTTTCTCTCCATCTTTGATCTCTTCTTGTTTGTTATATGATATATTAATACTATTTCAAGTTTTGTGTGTTTAATTTGTGTTGTAATCTATATGGGTATTTTCTTTTTAACTTTATAAGATTTGGGTCGTGGTTCAAATATTCACTTATAAGTTCAGATGTAAGTTCAGATGGGTTGGTCTGAGA

mRNA sequence

ATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTTTCTTATCCTGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGATCATCATAGCATCCTGTCCACCATGACTTGTGTCAAGAGGCTTCATGTTTAGTTTGTGTAAATTATTATAGCTCTCGAATTGATATGGGTTTCTCTCCATCTTTGATCTCTTCTTGTTTGTTATATGATATATTAATACTATTTCAAGTTTTGTGTGTTTAATTTGTGTTGTAATCTATATGGGTATTTTCTTTTTAACTTTATAAGATTTGGGTCGTGGTTCAAATATTCACTTATAAGTTCAGATGTAAGTTCAGATGGGTTGGTCTGAGA

Coding sequence (CDS)

ATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTTTCTTATCCTGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

Protein sequence

MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP

Homology

[Close]

BLAST of CmoCh02G004110 vs. ExPASy Swiss-Prot
Match: P17771 (Organ-specific protein P4 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-04
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 1  MKLSAAFFL--LFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDA- 60
          M L +AF L  LFL L+     +RK+ GEYWK VMKD+ +PE ++ LL D  ++ +S   
Sbjct: 2  MSLRSAFALLPLFLFLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL-DASNIKNSKTH 61

Query: 61 --QSEHFMNNFDTHPNAIIY 76
            +++  +  F+  PNA  Y
Sbjct: 62 AKENKGAIGEFEPCPNASAY 80

[Close]

BLAST of CmoCh02G004110 vs. ExPASy Swiss-Prot
Match: P17772 (Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-04
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1  MKLSAAFFL--LFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 60
          M L +AF L  LFL+L+     +RK+ GEYWK VMKD+ +PE ++ LL D  ++ +S   
Sbjct: 1  MSLRSAFALLPLFLLLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL-DASNIKNSKTH 60

Query: 61 SEHFM---NNFDTHPNAIIY 76
          ++  M     F+  P A  Y
Sbjct: 61 AKENMGAIGEFEPRPYASAY 79

[Close]

BLAST of CmoCh02G004110 vs. ExPASy TrEMBL
Match: A0A6J1G7K5 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.7e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 95
          HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP
Sbjct: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of CmoCh02G004110 vs. ExPASy TrEMBL
Match: A0A6J1L3N5 (organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MKLSAAFFLL L+LLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1  MKLSAAFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 95
           FMNNFDTHPNAIIYHSHGATHDHPGHKTK +AP
Sbjct: 61 RFMNNFDTHPNAIIYHSHGATHDHPGHKTKLTAP 94

[Close]

BLAST of CmoCh02G004110 vs. ExPASy TrEMBL
Match: A0A6J1D5L4 (organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 1  MKLSAAFFLLF-LILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQS 60
          MKLS AFFLL  L+L A   + RK++GEYWKK+MK+E IPE+LKELL+DD    S   Q+
Sbjct: 1  MKLSVAFFLLLSLLLFAEGGYGRKDQGEYWKKIMKEEEIPEVLKELLYDD----SVGGQN 60

Query: 61 EHFMNNFDTHPNAIIYHSH----GATHDHPGHKTKPSA 94
          E FM+NFD HPNAIIYHSH     A H+H   K K +A
Sbjct: 61 ERFMSNFDPHPNAIIYHSHSHGAAAGHEHSDEKIKAAA 94

[Close]

BLAST of CmoCh02G004110 vs. ExPASy TrEMBL
Match: A0A6J1FYV4 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MKLSAAFFLLF-LILLANVSH-ARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 60
          MKLS AFFLL  L+L  +VSH +RK++G+YWKK+MK+E IPEMLKELLFDD  +   + Q
Sbjct: 1  MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMV---ENQ 60

Query: 61 SEHFMNNFDTHPNAIIYHSHGATHDH 85
           + FMNNFD HPNAIIYH+H   H H
Sbjct: 61 KQRFMNNFDPHPNAIIYHAHAHAHGH 83

[Close]

BLAST of CmoCh02G004110 vs. ExPASy TrEMBL
Match: A0A6J1JGL9 (organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MKLSAAFFLLF-LILLANVSH-ARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 60
          MKLS AFFLL  L+L  +VSH +RK++G+YWKK+MK+E IPEMLKELLFDD  +   + Q
Sbjct: 1  MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMV---ENQ 60

Query: 61 SEHFMNNFDTHPNAIIYHSHGATHDHPGH 88
           + FMNNFD HPNAIIYH+H   H H GH
Sbjct: 61 KQRFMNNFDPHPNAIIYHAHAHAHAH-GH 85

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: XP_022947675.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 7.7e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 95
          HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP
Sbjct: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: XP_023534667.1 (organ-specific protein P4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 4.2e-43
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MKLSAAFFLL L+LLA+VSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1  MKLSAAFFLLSLLLLASVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 95
          HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP
Sbjct: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: KAG6605086.1 (hypothetical protein SDJN03_02403, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.3 bits (464), Expect = 9.4e-43
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MKLSAAFFLL L+LLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1  MKLSAAFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 95
          HFMNNFDTHPNAIIYHSHGAT DHPGHKTKPSAP
Sbjct: 61 HFMNNFDTHPNAIIYHSHGATRDHPGHKTKPSAP 94

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: XP_023006974.1 (organ-specific protein P4-like [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MKLSAAFFLL L+LLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1  MKLSAAFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 61 HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 95
           FMNNFDTHPNAIIYHSHGATHDHPGHKTK +AP
Sbjct: 61 RFMNNFDTHPNAIIYHSHGATHDHPGHKTKLTAP 94

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: KAG7035093.1 (hypothetical protein SDJN02_01888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 15 LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNNFDTHPNAII 74
          LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSL SSDAQSEHFMNNFDTHPNAII
Sbjct: 11 LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAII 70

Query: 75 YHSHGATHDHPGHKTKPSAP 95
          YHSHGAT DHPGHKTKPSAP
Sbjct: 71 YHSHGATRDHPGHKTKPSAP 90

[Close]

BLAST of CmoCh02G004110 vs. TAIR 10
Match: AT1G49310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-06
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 1  MKLSAAFFLLFLILLANVSHARKEKG-------EYWKKVMKDEAIPEMLKELLFDDDSLV 60
          MK    + ++F++LL+ +      +G       EYWKK+MK+E +PE +KELL +     
Sbjct: 1  MKQQQRYLVVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELLNN----- 60

Query: 61 SSDAQSEHFMNNFDTHPNAIIYHS 78
                E F+ NFDT    IIYH+
Sbjct: 61 PFRTAQERFIQNFDTKSVVIIYHN 79

The following BLAST results are available for this feature:

BLAST of CmoCh02G004110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P17771	8.9e-04	38.75	Organ-specific protein P4 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P17772	8.9e-04	38.75	Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of CmoCh02G004110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7K5	3.7e-45	100.00	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=...	[more]
A0A6J1L3N5	1.5e-41	94.68	organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 ...	[more]
A0A6J1D5L4	1.3e-18	58.16	organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV...	[more]
A0A6J1FYV4	1.7e-18	62.79	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=...	[more]
A0A6J1JGL9	2.3e-18	62.92	organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 ...	[more]

BLAST of CmoCh02G004110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947675.1	7.7e-45	100.00	organ-specific protein P4-like [Cucurbita moschata]	[more]
XP_023534667.1	4.2e-43	96.81	organ-specific protein P4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605086.1	9.4e-43	96.81	hypothetical protein SDJN03_02403, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006974.1	3.0e-41	94.68	organ-specific protein P4-like [Cucurbita maxima]	[more]
KAG7035093.1	1.0e-36	97.50	hypothetical protein SDJN02_01888, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh02G004110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49310.1	4.4e-06	35.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 23..58 e-value: 4.6E-7 score: 30.6
None	No IPR available	PANTHER	PTHR33731:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..85
None	No IPR available	PANTHER	PTHR33731	PROTEIN, PUTATIVE-RELATED	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004110.1	CmoCh02G004110.1	mRNA