CmoCh02G004040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G004040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 2080773 .. 2083953 (+)
RNA-Seq ExpressionCmoCh02G004040
SyntenyCmoCh02G004040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCCCAAAATCGTATTAAACAATTGGTGTTAAAGCAAAAATCGTTCAAGAAATCGAACGCAGAGTAGCAGAGGCCCTGAAGAAATGGCCGCAACTCCACACGCAGAAACCCAGATTTTGCAGGTTCAAGGGTTCTTTCAGTGAAAGAAGATGAACTAAAACCCATTTTTGAGGCTAGCTTCTTCATCCTTTTCTGTTTTATTTTCATTCTTAGTAGTTTATCTATGGGCCCAAATTCAGAGCTGAATCAATGGATTCTACAAGGAATTTCACGTGTATGCTTCTGCTACAAAACCCCCTTTTGTTTTCTTTTCAATTTTTCATCTCTGCAAAATTTTCCCTCTTTCCCATGTTGCTTTAAATAGTAATCGCTTTGTGTTCTTCTTGCACTGTTGATATATCTTTGATGTGTCCTATCCTGAACAACGTTCCAAGCAAGGCTAGCTGGCCAAACGAGTCTGTACAATGATTGCCTTGTATGTGTATGAAGAAATGCCTGGTTCCCATTTCCTCTTTGTTGGGGGTTTCTTAGCCATTAGTATCTTAGCAAGTGAATTCATGTTTTTTCCCTGTTGTTTTCCATCATTGTCATAGATATTGAACCTTAATTCTCTAAGCAATTTGCTAGGCTGTATTATCATCTTACATTGGAATTAGAACACATAGCTTAGGAGTGTGAAAGTCCAAGCATGTTAGAGCCATGATAAACAATGAACTGATGGTTAATAACTAGAAGTTGGAATATTGATTGCTCGATGAACCTCGTGAATTACAGATTTTCCAAATGAGTTTCTGGATAATCCCAACAGTTAATGTTATATGGATTGCTCGCACACCTATAAACGAGATGGGAGAACGAGCATTAACCCGATGAAAAGGATGAAATTGTATTGGTCCTTCAATCAGGATGAAATATTTCTTGATATCAAGCATATCCCTGATGACCCTTTTGTTTTGTTTTGTTGGAACTGTTTCTGAATGGTGTTATTGCAGTCACCAAGATTGGCTCATATGCTTTTGTCTGCTTATCCTTCCTTCATGTAACTTTTTAAGAGTCCACAGCTATGTATTCCCCTTGCTATATTTGGTTATTTTTATGTGAATAAATAGTGACATTTATTTTACTGGTTCCAGCTAGAAGATATGGTTGAGCTTTGGCTGGCCCATTTTATGTGTCTCAAGCTTCAATATTCAAAGTATGTATAATCATATTCCGACTGGTATCATGATATGTTTTTCAACTTAAATGCAATGTAGAATCTTTGTTGTTTTAGATGCAAAGAATTGTTACGGCCCAGCTGAATTCTTTTGTCTGCTCTTACTTTTCTTTTGTTACAAAAGATACTTGATCAGGGGACCTAATTTTTGTTTCTAATCAAGACGATATAGCATCGACAAAGTTATTGTCTTGGGATACTGTCGAAATACTTAGAATTCATTAAGAACAATCGATTCTCTTGTATAAGTATTGATTGGTGAAGTTCTACACTATCCAGCTACGGTGTTTTACATGTCGAGTCGATAAGACTCTTGTTAGACATACTCTAAGCAAGCATCTGATAACATAAGATAGCAGAATGACACCACTGCTTGAATCTACAGCTTAGGTAGAGAAGTCCAAAGCTAAACTCATCCATTGCAAACTAATATCTCGAAGTTGATGTCTATTTGAGCGTAGCTCGACTAGTGATGACATATATCTTCGACCAAGAGGTCAAAGGATTGAATCCTCCACTCTTACGCATTGTTGAACTCAAGTTATTAGTTTGCAATGGATGGAATGGAATCTTGAGTTACGCATTGTAGTCGAGTTCATTGCTTGATTATTACTTACACGTAATGGAATATGTGCCCGCAGATACACCCTCTGTTGACATTAAGAATCCTTATCAAGTATTGCCCTAATCCCTATTCACATGAAAATAATACTGATATCAATTCTGTTGATGATTGTCGGAAGAAGAATCTCACATTGGCTAATTAAGAGGTTGATCATGGGTTTATAAGTAAGGAATACATTTTCATTGGTATGAGACCCAAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGGTTTGTGATTCCTAACATGGTATAGAGCCATGCCCTTAACTTAGTCATGTCAATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGTCCTGAAGGTATAGTAAGAAGTGACTTAAATATTGAATAAATGATGTATTTTGTTCGAGGGCTCTAGAGAAAGGAGTTGACCCTCAATTAAGGGGAGGTTGTTCAAAGTCTCCATAGGCCTCAGGGAGGCTCTATGATGTACTTTGTTCGAGGGGAGGATTGTTAAGGATTGTTGGTAGAGGAGTCCTACATCGGCTAATTAAGAGGTTGATCATGAGTTTAAAAGTAAGGAATACATCTTCATTAGTATGAGGCATTTTAGGGAAACCAAAAGCGAAGCCATGAGAGCTTAGACTCAAAATGGACAATATCATACCATTGTGAAGTTTTCGTGATTCCTAACAAATTCCTCCCATCTTTGGGATTGTTCTGCTACAAAGTGGTCCTCGTCCTATGAGTCAAAAGATTCGATCATGTTTGACTGCTGTTCTATGGGTGAATGTGGATATGCATAGTTTGTTTAGTTCCCAAAGGGTGGTGTAAAGGTTGCATATTCAATTGCTAAGATGCGATGCATGGCTTTTGTATTCATTGCAGCCTAGTTGCTTGGAAGAAATGGACAAGAGTCATGAACTTTATGGAGAGAAGAAGAATTGCACCGTCCCGACCTAGTTGGATGGTCCAAAGGCGTCTTCAAAAAGATAACTTATTACACGGAATCTTACGAGCAGGTTAGCTTTTGAATTCCGAGTTGTTTGCTTTGTTTTTCTCCAAGATTATGCTGTGAAGTTAAAGAAATAGAAAAGGTCAGTGCAAAGTCCATTTTGGTCTGCTTGTATTAACATCTGATATAATCTCATGCTGCTTATATATATTCCAGTGTCGAGAAAATGCACGTGAACCCACCGGGTGCTCGTGATGTGGCAGGGGGTTTCTCCTCTTCCTTCACTTGTCTGCTCATTGGTTTTGGTATAATTTCAAGACATTTTATTCATTCCTTTATTATTAACAGCTGCAGAGTTATTGGTTTGGCCTATATTAGTGAAGTATCTACGTG

mRNA sequence

AAACCCCAAAATCGTATTAAACAATTGGTGTTAAAGCAAAAATCGTTCAAGAAATCGAACGCAGAGTAGCAGAGGCCCTGAAGAAATGGCCGCAACTCCACACGCAGAAACCCAGATTTTGCAGGTTCAAGGGTTCTTTCAGTGAAAGAAGATGAACTAAAACCCATTTTTGAGGCTAGCTTCTTCATCCTTTTCTGTTTTATTTTCATTCTTAGTAGTTTATCTATGGGCCCAAATTCAGAGCTGAATCAATGGATTCTACAAGGAATTTCACGTCTAGAAGATATGGTTGAGCTTTGGCTGGCCCATTTTATGTGTCTCAAGCTTCAATATTCAAACCTAGTTGCTTGGAAGAAATGGACAAGAGTCATGAACTTTATGGAGAGAAGAAGAATTGCACCGTCCCGACCTAGTTGGATGGTCCAAAGGCGTCTTCAAAAAGATAACTTATTACACGGAATCTTACGAGCAGTGTCGAGAAAATGCACGTGAACCCACCGGGTGCTCGTGATGTGGCAGGGGGTTTCTCCTCTTCCTTCACTTGTCTGCTCATTGGTTTTGGTATAATTTCAAGACATTTTATTCATTCCTTTATTATTAACAGCTGCAGAGTTATTGGTTTGGCCTATATTAGTGAAGTATCTACGTG

Coding sequence (CDS)

ATGGGCCCAAATTCAGAGCTGAATCAATGGATTCTACAAGGAATTTCACGTCTAGAAGATATGGTTGAGCTTTGGCTGGCCCATTTTATGTGTCTCAAGCTTCAATATTCAAACCTAGTTGCTTGGAAGAAATGGACAAGAGTCATGAACTTTATGGAGAGAAGAAGAATTGCACCGTCCCGACCTAGTTGGATGGTCCAAAGGCGTCTTCAAAAAGATAACTTATTACACGGAATCTTACGAGCAGTGTCGAGAAAATGCACGTGA

Protein sequence

MGPNSELNQWILQGISRLEDMVELWLAHFMCLKLQYSNLVAWKKWTRVMNFMERRRIAPSRPSWMVQRRLQKDNLLHGILRAVSRKCT
Homology
[Close]
BLAST of CmoCh02G004040 vs. NCBI nr
Match: KAG6605079.1 (hypothetical protein SDJN03_02396, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 18 LEDMVELWLAHFMCLKLQYSNLVAWKKWTRVMNFMERRRIAPS 61
          LEDMVELWLAHFMCLKLQYSNLVAWKKWTR+MNFMERRRIAPS
Sbjct: 36 LEDMVELWLAHFMCLKLQYSNLVAWKKWTRIMNFMERRRIAPS 78

The following BLAST results are available for this feature:
BLAST of CmoCh02G004040 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G004040 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G004040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605079.11.2e-1597.67hypothetical protein SDJN03_02396, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh02G004040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G004040.1CmoCh02G004040.1mRNA