CmoCh02G003870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 1985761 .. 1989622 (+)
RNA-Seq ExpressionCmoCh02G003870
SyntenyCmoCh02G003870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGAGTTTTCAAATCTGGAAGCCCAATTCGAAAAGAACCTGGCTCGTATTCCCATCGTCTTCCCGGATATGAAGTTAGGTATGGCATTGGATTGCTTTGAGCAAAACTCGTTGATTCGGTTGTGCTTGATGTTTGGCGATTCGGGTCTTGCATATGAAGTGTTTGATGAAATGTTTGTGAGAGATTTAGGTTCAAATTGAGTTCTATGATTGATGGGTTAGGTGAGTGTTTTCTGTATGGTCCGTTTGCTTGGTTTGTTATTGTTTTGATGTACGCTTCTTGAAAGAATATCATTTACTTTCTCGGTCTGTTGAGGCTATTAGGCTGTTTGTGCTAATGCTGGAAGCTGGGGTTTCGATTAAACGATGCCACAGCTGTGTCAAGTCCAAGGACATGGTTTGACACTGGGGCGTTAATGGTGGAAGGCGAGTGCATAAGATTGTTGAGAAGAATATAAGTGATTGTGGGAGATATGGTTGGTAAATGGCATGATAATTAAGGCAAAGGTTAAGGATTGATAAATGTAAAAGTATTAGTAAAATCAGCAGCATTCACTATAATATCATTTCCTCAATTTGTCTTGCTTATAGTAGTTCAGGGTGGGTGGGACTACTCTTCTGTGTAGGACACTTTGTTGAAACTATGTTGGATTGGATTCAAAATATACTGAATCTAGTGGCATAAAGCTTTCACCCCAGTTCGTCTTTCTCACACAGCCTAAATACTTGTAACAGCCTAAAGCCTAATCACACCGCTAGCAGATATTGTCCTCTATGAATTTTCTCTGCTCGGCTTCCCCTCAAGGTTTTAAAACGAGTCTACTAGGGAGTGGTTTCCACACCTTTATAAGGGATCTTTCATTCTCCTCTCCAATCAATATGAGATCTCACAATCCACCCCTCTTGGGGGCCACTATCCGATGTCTGGCTTTGATACCATTTATAACAGTCCAAGCCCACCGCTGGCACATATTGTCCGCTTTTACTAACTATGTATTGCCGTCAGCCTCACAGTTTTTAAAACACGTCTGCCAGGGAGAGATTTCTATACCCTTATAAGGAATGTTTTGTTCTTCTCTTCAACCAATGTAAGGATCTCACAATCCACCCTCCTTGGGGCCCAGCATCCTCGATGGCACACCGCCTGATGTCTAGCTCTGATATCATTCGTAACAACTCAAGCCCACCACTAGCAGATAGTGTCCTCTTTAGGCTTCCCATTATAAACTTCCCTCAAGGTTTTAAAATGCGTTTACTAGGGAGAGGTTTCCACACCCTTACAAGGAATGCTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACAGTCTACCCCCTTGGGGGCCAACGTTCTTGCTGGCACACCACTCGATGTCTCTGTTACCATTTGTAACAGTTCAAGTCCACCCCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGGGCTTTCCCTCAAGGATTTAAAACATGTTAATTAGAGAAAGCTTTCCACACTCTTATAAGGGATGTTTCGTTCTCCTCTCCAATCAATGTGGGATCTCACAATACTACTAAATCTAGTGACTGATTGCTTTATGCAACTACTCACCGTAAAGTCTTCACTTCGATTCGTCTTGCTCATACACGTACTCATACAACCAAAATAAGTAGGTTTGGATTGAAATGCACTACCCCTACCTGTTGAGATCTCAGTTGATCATGATATGTGGCTCCATTCCTTCTGATCTTGTATTTATACACCTAGGATATATCTTACCTTCAGTGCAAGTATTGAATCTTTCCTATTCCTAGAAGTTGCTTGGCAGGACTGCCCTCATATGCTCACATGTCAAGCCACAGATTGTGGAGAAAGGTTTCTTTACAGCCCACAGTCTGGTTTTGGAGATTCCCCCTCCCCCACCATAGCCGAATGGTTTGATAGTTTGATTTAGTGAAAATTTTGAGGCCAAAACCAGTGCTCCAGAGAATATTTTTCTTTTTTGCATTGTTCATCTACTTTTCTTGGACTGACTTGTTTATCACCATCACTGCAAAGTCTGACCCTCTTCTGTCTTGTAGGTCATATACTAAAGCATCAGTTTTTTTAAAGGTAAACCACTTCTTGTGTGTTGGTAGTATAGTAAGAAATAACATGTATATTTGGGTGTCCTTAAAATCAGATCTCATTCCCAATTTCTTACTTTTTTTTTTTTTAATTAGTGTTTGTTCGTGAACTTTCATGAAACTAACATCTTTGTGAGATTCCACGTCAGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGTAGACACGTTATAAAACCGTGAGGCTGATGACGATACGTAACAGGCCAAAACAGACAATATCTACTAGCGATGGGCTTGGGCTGTTACAAATGATATTAAAGCCAGATACCAAGTGGTATGCCAACGAGGACGCCGTGCCTCTAAAGGGGGTGGATTGTGAGATCTCTCACATCGGTTGGAGAGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAGATCGTGAGGCTAACGACAATATGAAACGAACCAAAGTAGACAATATCTGCTAGCAGTGGGCTTAGGTTGTTACAAATAGTATCAAAGTCAGACACCGGGCAGTGTGCAGGCGAGGACGTTACCCCCAAGGGGGGTGGATTGTGAGATCTCACATTGGTTTGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGAAAACCTCTCCTTAGTATACATATTTTAAAACCGTGAGGCTGACGGCGATACAGAACAGGCCAAAGCTAACAATATCTACTTGCGGTGGGTTTAGATTATTACAAAACTAATCTAATCAACTTCTATTAAAGGAGAGAATATAAAAGTCGAAGAAAAGAAAAGAAAAATCCTCCAACTTCTAAGCAACACCACACCATATGAGACTCATTAAAAGAACTCATTGTTGGTCCAATGAAGTCATTAAGAGCATGGCTGAGCATATTCCAATATCCCAAACTGATGAAGTCACCACCAACACCAAGCTTTTCTTTCCTTCAAAATGCAATCAGATCAAAAGGGAAAAGCCAAAATATATGTATAAACAAAGAAGGTTTGGTTTGTTTTTGGCTCTTCTTTTAGGTTATGGGCAAACTTTTGTAACTTTTTTTATTTAAGTGGAAGCCACCATGCCTAACTTTCTTTACCTCTCACCAATCAAAATAACTTTTCTCCCTTTTTAACTTGAATGACTTGGTAAAGTCAAAGTCGAGCAAACTTTATTGGAATTTTTTGGAATGTTGTCGTTTATTCTAGAAACTTGATCGTAAATAATCTCGTTCGAATCTTAGTTTGGTTCTTGAACTTTGTATGTATCGTCTTATCAGGAATAAAAGAGTTATGCTAGAGAAACTTGCACATTGTGCTTGCAGATGAGCAAGATTATGAAAATGATAGATCGTATTCTTGCAATCTTTCCTCGAGGGATGAAGTCGTCTTGGCCTTATCCAAAGGAGAGAAAGTCCAAGGACGAGAACCATGGAAATTGATTTAAGAAGCGTAAATATGTGGAAAACACAATAAGAAACTCTGCCTTAGACATACGTTGTTGAGGTTGAGATCGAGGAAAATAGTTCGACAGTGGATAGCAAAATTATAGAAGATTCAGATCGAGTAAGGTTACATCCAAAGAAATATGCACAAGGTAAAAGACGTGTGATATCCTCAGAATTGCTCTCATTCGAATGTAGTATTGGTGCATTCATGTACCTCTCTTTTACTCAGGTGTCACACATTACTTACTCATCGCATCTAAAAGTGAAGACTATTTCCACAAACCGACACGAGTCCTTATCTCACG

mRNA sequence

ATGCACGAGTTTTCAAATCTGGAAGCCCAATTCGAAAAGAACCTGGCTCGTATTCCCATCGTCTTCCCGGATATGAAGTTAGGTATGGCATTGGATTGCTTTGAGCAAAACTCGTTGATTCGGTTGTGCTTGATGTTTGGCGATTCGGGTCTTGCATATGAAGTGTTTGATGAAATGCTGTTTGTGCTAATGCTGGAAGCTGGGGTTTCGATTAAACGATGCCACAGCTGTGTCAAGTCCAAGGACATGATGAGCAAGATTATGAAAATGATAGATCGTATTCTTGCAATCTTTCCTCGAGGGATGAAGTCGTCTTGGCCTTATCCAAAGGAGAGAAAGTCCAAGGACGAGAACCATGGAAATTGATTTAAGAAGCGTAAATATGTGGAAAACACAATAAGAAACTCTGCCTTAGACATACGTTGTTGAGGTTGAGATCGAGGAAAATAGTTCGACAGTGGATAGCAAAATTATAGAAGATTCAGATCGAGTAAGGTTACATCCAAAGAAATATGCACAAGGTAAAAGACGTGTGATATCCTCAGAATTGCTCTCATTCGAATGTAGTATTGGTGCATTCATGTACCTCTCTTTTACTCAGGTGTCACACATTACTTACTCATCGCATCTAAAAGTGAAGACTATTTCCACAAACCGACACGAGTCCTTATCTCACG

Coding sequence (CDS)

ATGCACGAGTTTTCAAATCTGGAAGCCCAATTCGAAAAGAACCTGGCTCGTATTCCCATCGTCTTCCCGGATATGAAGTTAGGTATGGCATTGGATTGCTTTGAGCAAAACTCGTTGATTCGGTTGTGCTTGATGTTTGGCGATTCGGGTCTTGCATATGAAGTGTTTGATGAAATGCTGTTTGTGCTAATGCTGGAAGCTGGGGTTTCGATTAAACGATGCCACAGCTGTGTCAAGTCCAAGGACATGATGAGCAAGATTATGAAAATGATAGATCGTATTCTTGCAATCTTTCCTCGAGGGATGAAGTCGTCTTGGCCTTATCCAAAGGAGAGAAAGTCCAAGGACGAGAACCATGGAAATTGA

Protein sequence

MHEFSNLEAQFEKNLARIPIVFPDMKLGMALDCFEQNSLIRLCLMFGDSGLAYEVFDEMLFVLMLEAGVSIKRCHSCVKSKDMMSKIMKMIDRILAIFPRGMKSSWPYPKERKSKDENHGN
Homology
[Close]
BLAST of CmoCh02G003870 vs. NCBI nr
Match: KAG6605063.1 (hypothetical protein SDJN03_02380, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 5.6e-40
Identity = 92/121 (76.03%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 1   MHEFSNLEAQFEKNLARIPIVFPDMKLGMALDCFEQNSLIRLCLMFGDSGLAYEVFDEML 60
           MHEFSNLEAQFEKNLARIPI FPDMKLGMALDCFEQNSLIRLCLMFGD GLAYEVFDEM 
Sbjct: 1   MHEFSNLEAQFEKNLARIPIFFPDMKLGMALDCFEQNSLIRLCLMFGDLGLAYEVFDEMF 60

Query: 61  FVLMLEAGVSIKRCHSCVKSKDMMSKIMKMIDRILAIFPRGMKSSWPYPKERKSKDENHG 120
           +        + + C  C++    MSKIMKMIDRILAIFP  MKSS P+PKERKSKDE HG
Sbjct: 61  Y--------ARETCTLCLQ----MSKIMKMIDRILAIFPPMMKSSRPHPKERKSKDERHG 109

Query: 121 N 122
           N
Sbjct: 121 N 109

The following BLAST results are available for this feature:
BLAST of CmoCh02G003870 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003870 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605063.15.6e-4076.03hypothetical protein SDJN03_02380, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh02G003870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003870.1CmoCh02G003870.1mRNA