CmoCh02G003520 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003520
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S12
LocationCmo_Chr02: 1761045 .. 1765427 (+)
RNA-Seq ExpressionCmoCh02G003520
SyntenyCmoCh02G003520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGGGTTGCTTTTATTGTGTCGCTTAAATTATATAGGAACTCTTGAACCCAAGAGTTAAGAATAACAAGTTCTTCATTACCAAGAATAGAATAACCACTTAGAATAATGAAACAGATTATATTTGTCGATGAATACATCACTTTTGCACTAATTTCTCAAAAAACTTTCTCTGTGATAATCAAAACCGAACCAAAACCGATCGGTTCAAACTGATTTATGTAAAAAGTTAACTCAGCCGGCGGTTTTGCTAAACCGGATATTGTGGTTCGATTCTCGATTTGGATAAACCGAACACCGGCCGTATAGGGCTAGGTCACCAACCAGTTGGGCTTTTCCATTCCTCTTCTTCTTCATAAAAACCCCTCACTTCTTCTTGACCTAATTTGCTGCGCCGTTGATTCTTCACTTCGATCGGTATCTACGCTGTTCTCAAGTCGTCTCCTATCCCTATCCTTCCTCGCTTCTTCTTCTTCGATTGTGCCTCTGTTTAAATTGTCTGATTGTTTTTTTGCGTTTGTTTTGCGACAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTGAAAATTTGTTTAGAAGCGTCCATTGGTTGTTTTTTCTTTTATAATTTAAGTTGTTGAATGCCGCTCCTTCTTTCGTTTTTGTTTGCTTCGTTTGAAATATATTAGTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGGTGACTAATCTAGATTGTGAATAAGAAAAAGTTGTGAGTTGAAATTTGATTGGCGAAGGTGACGGAATAATAAATGTTGATGCCTTTAGAGATGAAAATTATATGTTTTGGTTTGAATCATATGAAATATGGAACTTTAAATGAAAATGTGATTTGTTACATTACTTTGTTGGACATTGAAAGATCACGACTGAAGAGTCAAGATCTTATGCTTGTTTAGGAGTGAAATACTATTGAGGTTTCTTTTGTTATTGGCATAGTATTTGCTGCAAATGGCTATATATTGCCTCCAATTGCTTGACAAATCCTTTTTAACTCGATTTCTTATGCAGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTCTAATCTTATTTAGCCATCGAGATAAAAATGGCTTTTCTTTTGATCATCTGTCATCACTTGTATTGTATTTATCCTACTATGATTGAATATACACCTCTCAATACTAGGCTACATGTTTTTACCCGTTAATACTTGGCTGCTTTACATGCTCGGGATCGTATTTACATACTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCCGTTATTACTTAGCTGCTTTACATGTTCAGGATCGTATTTACATAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCCGTTAATACTTAGCTGCTTTACATGTTCGGGATCGTATTTACACAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCTGTTAATAATTAGCTGCTTTACATGTTTGGTATCATATTTGCATAACCTCTTCAAGCACAATCAAGAAGAAGCTTTCTTTTTCACATGCCCTGTCAACACCACGATCGGGGAAGCTCATTTTTGCTTGTATATTGGCATTATACACCATGAATTTGAGTTCGATTTCAAGATGTAATTGATGTGCAGATCCCAATACTACCATCATAAGATTTCCCCCATCTTACTTCAGGATAATAAGTTATTGTGTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGTACGTTGTATGATGATGCCCATCACTTCTGGAGCAAATGTTCTGTTCTCTGAACCATTTTTGTTTACTTAAAATTTGAATTCCTATCTCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATGTCAATCACTAAGAAAGTTTTTGATCTTTAGTAATGTTTAGATTGGTTGGTTCCCTGTTGCTGTTGAACACGTTTCTTCTACCCTATAATGCTTTTCTTTGTTTCTATTGATTGGAAAGATTTTGGGCAAACAGAACACAAGTTATTTATCAAGAGTCTCCTTGCCAAGGGTGAAAGGGAATTGAATTTTATCATCTCTTTATGTTGAGTTACTAAGCTATACCTATTTTCGTTTCTGAAGATTAATGCAACAGTGTCTAGTATAGTTTTTCTTTTCCTATAAAACTCAATATGTTATCATTCATATTAGTCGATGCAGTTGAGGTTCATTCGTATATTAATTTGAATTAGACAGCATTCTAAAATTTGATTATCTTGTGAGAAAGGTAGTAAAGGAATCCCAACTTAGGGGTTTAGTTGAGATATTTTTAGATTTAATTCAATTGTTCGAATGGAATTGAACTTTTTATTTTCTTTATTTAAGTAATCTATATTAAATAATTTATCAAATTCTTTGTTTGAGTCATTTATTTAAGCTTTTTTAAATAAATTGTTAATATAGAAAATATTTATTTATTTATTTATTTTTAAACATTGAAATATTTGAAATCTAATTTTAATATATAGTTTGAAAAATTAGATTTCGAAGATTGAATAATCGAAAAAACAATTATAGAATTAAATAAAGTATAATAAACATACATACATGTAATACATGTAAGTACATCGTTAACAAAAAAAAAATTTTAAAATTAAAAAAATTAACAATGGTTTAATCGATTTTAATTTTAGGGAAATTCACAAGAATTTAACCCATATAATTTGAGCCTCTCAGTTGGAACTGCGACGGTGGTTCGGAGTGTCGTTGACCTGCTAAATGCCACAACATTGTCGGTGCGATTATTATTTAGGAAGTTTCTGAGATCCTTCAGTCAACTTCGAAATTAGTCAAACCCCTAGTTGTAGCTTTTGTTGCTGTGTCAAACCCCTAGTTGGATGGTTAAATCCAAATTCTTCTTCAGCTCTGTTCAGCAATCTGATAAATGAAGGATGGTTTAAATATGATATCCGCACCACGAATCGCTTACTTTTGATCTCTTCAAGATTTTTAAAACACGTCTGCTAAGGAGAGGTTTTTATATCTTTATAAAAAATGTTTCATTCTCCTCTCTCAATTAATGTGAGATCTCACAATCCACCTTTCCTTCAAGGTCCAGCGTCCCGCTGGCACTTGTTTCTCTCTCCAATCGATGTGGTATCTCAAAATCCACCCCTCTTCAAGGCTCAGCGTCTTCGCTGGCACACCGTTCGGTGTCTGGCTCTAATACCAATTGTAACGGCTCAAGCCCACCGTTGGCAGATATTGTCCTCTTTGGACTTTCCCTCTCAGGTTTCCCCTCGTATTTGTAAAATGCATCTATTAGGGAGAGGTTCACACACCTTTATAAAGAACGTTTCTTTCTCCTCCTCTAACAATCGTTCCTCTCTCCAATCAATGTAGTATCACACGCCATGTTCGTAATCGATTCAAGTGATAGAAAAATAATGAGTTTGACTGGTTTTTCTCTGAATGAGAATGTGTTGATATTAGGTGTGGATTTATAGAATGAACGAAGAGTAGATGTGCTTTATTAAAGAAGACCCACTTCATCAAATACTCACATGGGATTGCTAACCAATATCTTCACCATATTTTGGTAGGGAGACCCCCTCTTGCCCCAAAAAAAGGAAGCCAAAGACCCAACAAATGGCCAAGAAAATTTCAAAACTAAATGGCAGATCTGTTTGACAAGCTTTTCCTCAACAAGTTTCTGTTTCAATAGACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

mRNA sequence

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

Coding sequence (CDS)

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

Protein sequence

MSLPWYRVHTVVLNDPDRLFSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGRRKELQIKKKNVSLSTMPCFCNVESEACDKRFECDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHTMNSENRLEFQCKNQTASQILSVVAIKDAVVSPA
Homology
[Close]
BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-54
Identity = 101/127 (79.53%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 100 VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPD 159
           VEAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPD
Sbjct: 13  VEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPD 72

Query: 160 YVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEA 219
           YVKLVKALCAEH+V+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E 
Sbjct: 73  YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEG 132

Query: 220 LHIVQKH 227
           L+IVQ++
Sbjct: 133 LNIVQQY 139

[Close]
BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-49
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]
BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-48
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0 

Query: 94  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

[Close]
BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-37
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 0 

Query: 106 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 165
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 166 ALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 225
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 226 HTMNSENRLEFQCK 240
           +         F+CK
Sbjct: 127 Y---------FKCK 131

[Close]
BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-37
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 0 

Query: 106 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 165
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 166 ALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 225
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 226 HTMNSENRLEFQCK 240
           +         F+CK
Sbjct: 127 Y---------FKCK 131

[Close]
BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1G761 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1L207 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 4.6e-69
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPM+IETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMNIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.0e-69
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1FU69 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAV+VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVLVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match: A0A6J1KYK1 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.3e-68
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDY+KLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  ++
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 89  KRFECDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 148
           ++   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 46  RKMSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 105

Query: 149 CVLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 208
           CVLGEDCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 106 CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 165

Query: 209 VVKDFGEDHEALHIVQKHTMNS 231
           VVKDFGEDHEALHIVQKH  +S
Sbjct: 166 VVKDFGEDHEALHIVQKHVSSS 187

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_022947564.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022947565.1 40S ribosomal protein S12-like [Cucurbita moschata] >XP_023533236.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023533237.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >KAG6605029.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-69
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 9.5e-69
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_023007085.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 271.2 bits (692), Expect = 9.5e-69
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVVVEAPAPALGEPM+IETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMNIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0 

Query: 94  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0 

Query: 94  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

The following BLAST results are available for this feature:
BLAST of CmoCh02G003520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XHS01.1e-5479.5340S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1[more]
Q9SKZ31.0e-4975.2040S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1[more]
Q9S9P11.5e-4872.2640S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1[more]
Q76I817.6e-3755.2240S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1[more]
P253987.6e-3755.2240S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3[more]
BLAST of CmoCh02G003520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G7611.2e-6997.8140S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=... [more]
A0A6J1L2074.6e-6997.0840S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1[more]
A0A6J1JGV56.0e-6996.3540S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1[more]
A0A6J1FU691.0e-6896.3540S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=... [more]
A0A6J1KYK11.3e-6895.6240S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1[more]
BLAST of CmoCh02G003520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571063.12.5e-6993.6640S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022947564.12.5e-6997.8140S ribosomal protein S12-like [Cucurbita moschata] >XP_022947565.1 40S ribosoma... [more]
XP_023512603.19.5e-6997.0840S ribosomal protein S12-like [Cucurbita pepo subsp. pepo][more]
XP_023007085.19.5e-6997.0840S ribosomal protein S12-like [Cucurbita maxima][more]
XP_022986724.11.2e-6896.3540S ribosomal protein S12-like [Cucurbita maxima][more]
BLAST of CmoCh02G003520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G32060.17.3e-5175.20Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.37.3e-5175.20Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.27.3e-5175.20Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.21.1e-4972.26Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.11.1e-4972.26Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 200..213
score: 81.17
coord: 175..196
score: 57.85
coord: 134..150
score: 48.13
coord: 120..133
score: 54.55
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 95..226
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 116..134
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..59
e-value: 4.5E-31
score: 108.1
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 116..209
e-value: 8.4E-27
score: 92.8
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 98..229
e-value: 3.9E-53
score: 180.3
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 109..226
NoneNo IPR availablePANTHERPTHR11843:SF2040S RIBOSOMAL PROTEIN S12coord: 95..226
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILY161077Photosystem II antenna protein-likecoord: 3..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003520.1CmoCh02G003520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006412 translation
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0009521 photosystem
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003735 structural constituent of ribosome