CmoCh02G003470 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR21-like
LocationCmo_Chr02: 1748684 .. 1749487 (-)
RNA-Seq ExpressionCmoCh02G003470
SyntenyCmoCh02G003470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCCAGTTGCCTTTGATACTCCTCGATGCCAAGCAAGTTCTCAAAAAGCAAGCTATTTCTACAACAAACCAATCTGACGTTCCGAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGGTTTCAGTTCCGAAACCATACTTAAACTATTCTACATTCGTGACTTTACTTAAAGAGGACTGAGGAAGAGTTTAGATACAATGATCCTATGGGGTTTGACAATCCCTGCAGAGAAGATGCCTTCGTTAATCTCACTTCTACGCTACATAGCTTTTGAAAGATTATGTACAGATAGAAATCCCTAACATTCTTTTGTTCATTTTTAGTTAGAAAAACTCTTCTTGAAACTGAAGGGATAGAAAAGGAGGTTAATTACCCTCCAATCGACACAGTATCGAGCCCATATGAAGATAGGGGAAACCCAACTTTTCATAGGTTCAAAAACCATACAAGATATGTGTTCTGGTGTAAACCTGATATATTAAATCTGACAATATTTAGATGTGCATGCTTTATGCTCACAATAAACAAGTCAACATACTTGGGCTGAAAATGATGGTAGAACTTTGTGGATGATTTATGCCTCTAAGAGTTAGCATTTTTTGACTAAGCTATGTACTTTGACTTGGTCTTTTAGTTTTCGTTAATGAGAACCATTCTTTGATAGGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAA

mRNA sequence

ATGGGAATCCAGTTGCCTTTGATACTCCTCGATGCCAAGCAAGTTCTCAAAAAGCAAGCTATTTCTACAACAAACCAATCTGACGTTCCGAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGAAAAACTCTTCTTGAAACTGAAGGGATAGAAAAGGAGGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAA

Coding sequence (CDS)

ATGGGAATCCAGTTGCCTTTGATACTCCTCGATGCCAAGCAAGTTCTCAAAAAGCAAGCTATTTCTACAACAAACCAATCTGACGTTCCGAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGAAAAACTCTTCTTGAAACTGAAGGGATAGAAAAGGAGGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAA

Protein sequence

MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKRKTLLETEGIEKEGPQFGTYKACRVSFDLDIDVAGHSLMESQSHGGSVLPFST
Homology
[Close]
BLAST of CmoCh02G003470 vs. ExPASy TrEMBL
Match: A0A6J1JHD8 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484393 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+ST NQSDVPKGH+AVY GEI++KR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSDVPKGHIAVYVGEIQKKR 45

[Close]
BLAST of CmoCh02G003470 vs. ExPASy TrEMBL
Match: A0A6J1FU78 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448827 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+ST NQS+VPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSNVPKGHIAVYVGEIQRKR 45

[Close]
BLAST of CmoCh02G003470 vs. ExPASy TrEMBL
Match: A0A5A7TQ57 (Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001750 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+S  NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]
BLAST of CmoCh02G003470 vs. ExPASy TrEMBL
Match: A0A1S4E2E4 (auxin-responsive protein SAUR21-like OS=Cucumis melo OX=3656 GN=LOC107991554 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+S  NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]
BLAST of CmoCh02G003470 vs. ExPASy TrEMBL
Match: A0A6J1FYM2 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448834 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.8e-09
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+ST NQS VPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSGVPKGHIAVYVGEIQRKR 45

[Close]
BLAST of CmoCh02G003470 vs. NCBI nr
Match: KAG6571046.1 (Auxin-responsive protein SAUR19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+ST NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQALSTRNQSDVPKGHIAVYVGEIQRKR 45

[Close]
BLAST of CmoCh02G003470 vs. NCBI nr
Match: KAG6571050.1 (Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+ST NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSDVPKGHIAVYVGEIQRKR 45

[Close]
BLAST of CmoCh02G003470 vs. NCBI nr
Match: XP_023512612.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-09
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+S  NQSDVPKGH+AVY GEIERKR
Sbjct: 1  MGIRLPSILLNAKQILKMQALSARNQSDVPKGHIAVYVGEIERKR 45

[Close]
BLAST of CmoCh02G003470 vs. NCBI nr
Match: XP_022986728.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+ST NQSDVPKGH+AVY GEI++KR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSDVPKGHIAVYVGEIQKKR 45

[Close]
BLAST of CmoCh02G003470 vs. NCBI nr
Match: XP_038901156.1 (auxin-responsive protein SAUR21-like [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLDAKQ+LK QA S  NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLDAKQILKMQATSARNQSDVPKGHIAVYVGEIQRKR 45

The following BLAST results are available for this feature:
BLAST of CmoCh02G003470 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JHD82.0e-0975.56auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484393... [more]
A0A6J1FU783.4e-0975.56auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A5A7TQ574.4e-0975.56Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S4E2E44.4e-0975.56auxin-responsive protein SAUR21-like OS=Cucumis melo OX=3656 GN=LOC107991554 PE=... [more]
A0A6J1FYM25.8e-0975.56auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
BLAST of CmoCh02G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571046.11.8e-0977.78Auxin-responsive protein SAUR19, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6571050.11.8e-0977.78Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023512612.13.2e-0977.78auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo][more]
XP_022986728.14.1e-0975.56auxin-responsive protein SAUR21-like [Cucurbita maxima][more]
XP_038901156.14.1e-0977.78auxin-responsive protein SAUR21-like [Benincasa hispida][more]
BLAST of CmoCh02G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003470.1CmoCh02G003470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin