CmoCh02G003450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G003450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr02: 1747387 .. 1747933 (-)
RNA-Seq Expression	CmoCh02G003450
Synteny	CmoCh02G003450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTGTAAATGAGTTGCATTGTAAAGATACATTTACTGACAGAATTAATGAAAAATAGATCAATTCACCATCAATTTCTATATCGTATTTTCTGGTGATTTGTGATTGCTAATCTGAGGTTTTGGGGAGAGAGAAAACTTGTTACTAAATTATTATATACCAAAAAAGAAACTGAATAACACATTGACCGGCATCAAACATTCTACAAGTTCATACAGATTTCCCCAGAAATCTGTAATATGTTTCAAAGGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA

mRNA sequence

ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTATCAATTCACCATCAATTTCTATATCGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA

Coding sequence (CDS)

ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTATCAATTCACCATCAATTTCTATATCGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA

Protein sequence

MLECCRVGNLPTYQFTINFYIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDWKFLKDEGKENSPSFEHFPCFLDSFMNLD

Homology

[Close]

BLAST of CmoCh02G003450 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-05
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE++ K+++ PISYLN PSFQ LL  +EEEF F H
Sbjct: 33 VGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDH 68

[Close]

BLAST of CmoCh02G003450 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-05
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE++ K+++ P+SYLN PSFQ LL  +EEEF F H
Sbjct: 33 VGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDH 68

[Close]

BLAST of CmoCh02G003450 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.2e-05
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE++ K+++ P+SYLN PSFQ LL  +EEEF F H
Sbjct: 33 VGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDH 68

[Close]

BLAST of CmoCh02G003450 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE + ++FV P+SYLN PSFQ LL  AEEEF +HH
Sbjct: 34 VGE-KMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHH 68

[Close]

BLAST of CmoCh02G003450 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE++ K+++ P+SYLN PSFQ LL  +E+EF F H
Sbjct: 33 VGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDH 68

[Close]

BLAST of CmoCh02G003450 vs. ExPASy TrEMBL
Match: A0A2R6QQ52 (Auxin-responsive protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16252 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDW 81
          VGE+E K+FV PISYLN PSFQ LL  AEEEF F H   V    AK+ S LISLLDW
Sbjct: 39 VGESEKKRFVVPISYLNQPSFQDLLSQAEEEFGFDHPMVVLPFPAKKTSSLISLLDW 95

[Close]

BLAST of CmoCh02G003450 vs. ExPASy TrEMBL
Match: A0A6J1CXV3 (auxin-responsive protein SAUR24-like OS=Momordica charantia OX=3673 GN=LOC111015448 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLI 76
          VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F++
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIV 89

[Close]

BLAST of CmoCh02G003450 vs. ExPASy TrEMBL
Match: A0A0A0LIZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258760 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL H+EEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLNHSEEEFGFHHPQGALTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. ExPASy TrEMBL
Match: A0A6J1CYH2 (auxin-responsive protein SAUR23-like OS=Momordica charantia OX=3673 GN=LOC111015444 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. ExPASy TrEMBL
Match: A0A6J1CWI9 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015449 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: PSS12041.1 (Auxin-responsive protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDW 81
          VGE+E K+FV PISYLN PSFQ LL  AEEEF F H   V    AK+ S LISLLDW
Sbjct: 39 VGESEKKRFVVPISYLNQPSFQDLLSQAEEEFGFDHPMVVLPFPAKKTSSLISLLDW 95

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: XP_022146168.1 (auxin-responsive protein SAUR24-like [Momordica charantia] >XP_022146169.1 auxin-responsive protein SAUR24-like [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLI 76
          VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F++
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFIV 89

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: XP_038901159.1 (auxin-responsive protein SAUR24-like [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL+HAEEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQMKRFVVPISYLNHPSFQKLLRHAEEEFGFHHPQGGLTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: KGN61880.1 (hypothetical protein Csa_006123 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL H+EEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLNHSEEEFGFHHPQGALTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: XP_022146170.1 (auxin-responsive protein SAUR21-like [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 20 YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          Y+G   E E K+FV PIS+LNHPSF+  L  AEEEF F+H
Sbjct: 43 YVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNH 82

[Close]

BLAST of CmoCh02G003450 vs. TAIR 10
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 20 YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          Y+G   E++ K+FV PISYLNHPSFQ LL  AEEEF F+H
Sbjct: 29 YVGEEMESK-KRFVVPISYLNHPSFQGLLSRAEEEFGFNH 67

[Close]

BLAST of CmoCh02G003450 vs. TAIR 10
Match: AT4G34790.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 20 YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          Y+G   + E K+FV PISYLNHP F+  L  AEEE  FHH      I  +  SFL
Sbjct: 47 YVGE--QMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFL 99

[Close]

BLAST of CmoCh02G003450 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE   K+FV P+SYL+ PSFQ LL+ AEEEF F H
Sbjct: 42 VGEQNMKRFVVPVSYLDQPSFQDLLRKAEEEFGFDH 77

[Close]

BLAST of CmoCh02G003450 vs. TAIR 10
Match: AT5G18020.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE++ K+++ PISYLN PSFQ LL  +EEEF F H
Sbjct: 33 VGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDH 68

The following BLAST results are available for this feature:

BLAST of CmoCh02G003450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJG0	2.4e-05	61.11	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FK62	3.2e-05	58.33	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
Q9FJF6	4.2e-05	58.33	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S...	[more]
P33083	5.5e-05	63.89	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FJF7	9.3e-05	55.56	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S...	[more]

BLAST of CmoCh02G003450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R6QQ52	3.8e-09	64.91	Auxin-responsive protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
A0A6J1CXV3	7.1e-08	61.54	auxin-responsive protein SAUR24-like OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A0A0LIZ9	2.1e-07	60.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258760 PE=3 SV=1	[more]
A0A6J1CYH2	2.1e-07	62.75	auxin-responsive protein SAUR23-like OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1CWI9	2.1e-07	62.75	auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of CmoCh02G003450 vs. NCBI nr


Match Name	E-value	Identity	Description
PSS12041.1	7.8e-09	64.91	Auxin-responsive protein [Actinidia chinensis var. chinensis]	[more]
XP_022146168.1	1.5e-07	61.54	auxin-responsive protein SAUR24-like [Momordica charantia] >XP_022146169.1 auxin...	[more]
XP_038901159.1	3.3e-07	62.75	auxin-responsive protein SAUR24-like [Benincasa hispida]	[more]
KGN61880.1	4.3e-07	60.78	hypothetical protein Csa_006123 [Cucumis sativus]	[more]
XP_022146170.1	4.3e-07	62.75	auxin-responsive protein SAUR21-like [Momordica charantia]	[more]

BLAST of CmoCh02G003450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34810.1	1.6e-07	60.00	SAUR-like auxin-responsive protein family	[more]
AT4G34800.1	2.1e-07	65.00	SAUR-like auxin-responsive protein family	[more]
AT4G34790.1	1.0e-06	49.09	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	1.7e-06	63.89	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	1.7e-06	61.11	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 24..61 e-value: 9.2E-9 score: 35.4
None	No IPR available	PANTHER	PTHR31929:SF44	AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE	coord: 19..62
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 19..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003450.1	CmoCh02G003450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin