CmoCh02G003420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G003420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	auxin-responsive protein SAUR21-like
Location	Cmo_Chr02: 1741380 .. 1744981 (-)
RNA-Seq Expression	CmoCh02G003420
Synteny	CmoCh02G003420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCCAGTTGCCTTTGATACTCCTCAATGCCAAGCAGGTTCTGAAAAAGCAAGCTATTTCTACAACATACCAATCTGATGTTCCAAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGGTTTCAGTTCCGAAACCATACTTAAACTATTCTACATTCATGACTTTACTTAAGAGGACTGAGGAAGAGTTTAGATACAATCATCCTACGGGGGGTTTCCCAATCCCTGCAGAGAAGATGCCTTCTTTGATCTCACTTCTAGGCTACATTGCTGTTGAAAGATTATGTACAGATAGAAATTCCTAACATTCTTTTGTTCATTTTTAGTTAGAAAAAATCTTCATGAAACTGAAGGGATAGAAAAGGTGGTTAATTACCCTCTAATTGACACAGTATCAAGCTAGAGTAGTCTAATAAGGAAGAATCTTTGTTTAAAGCTTCACATCCTAGTGCCCAGCCAGCCAGATGAGGAAGATATGCCGATAGTTGCTCTTTGGTAGCCCATTTCGAGTTCGTGATTGTAAGATCAAGTATGGATCAGAAAGCCTCAATTTTACCAGAACATTATAACATGTATAAAATTATATTGTAACATGAATTATGAGATATAAGTTCTTTGAATTTTCTTATTTTATCATGCAACAAGACATTTGACAAAACTCAAGCACAAAGAATTTATCATAAAAATAAGATTTCTATTTCTATCCGGTTCTCAAGAAAGAGGCAAAAATTCTGCTTAGGCAAGTTAGAAAATGTAAAACGAAATAAGAGGATGTTTGAAGATGAGAGCTTTTCTTGGATCAACCATTTTGAATTAGCTCATTTTAAGACTTCTTTTTGGTGTTCTCTACTAATCTTTTTCTTCTCTTATGAGCATCGTTAGAGTAACACTTTGCATTTCATGGTATTCATTTATTTAAGAAAAACCTTTGTGCTCAGCTGTATTCAAGTAAAGTAGCAAGAACATGGAGATGAAAAACCCAACGAATTTACGTGAAAAAAATTCATGAAGGGGCAGTGTTCTTGAAAGAAAATGTGACTATCTATTTCAATTTTGTATCTCTTTTACACTACTCATCATTTACATTTAGAAGCTAACTCTACATTGATGTTCTACATTTAACTATGGGAAAAAATTGAAGGGAATCTGGCAAAACTGTGTGGAGGATTGTTATTCTTCTCTCTTTCAGGAAGATTGTAGCTTGGATGTCAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCAGTTGGATGTTTAAATCCAAATTCTTCTTCTGCACTGCTGAGCAAAGCAGAAAAAGAAGGATGGTTTAGGTATGCTATTGGAACTACAAATCTCTTTCTCTCAATATCTCCCACATAAACTGCAATATGGCCTTTGGGAACGCCACATCGGTTGGAAGAAGCGGTATGCATTTTGACAGCTTGCTTGGCATTGAGGAGAAGTGAAGGTAGTCTGATTCCCATGTTTAGTTTTGAAAAGTTTTCCGCTCGATGGAAAGTGTAGTGCTTGAATGAAGATGTTCTTGAAATTTGAGTTGGAGATTGAAGTTTATTTGAACCGTATTTATGGATTCAGAACGGGGAAGTGGTGAGAAGAAAACAGTATCAAGTTGGTCTCTAGGAGGGCCTACTTCATAAATGCTCACATGGGTTGCTTATTTGGTTTGAATAGACGCACTTCATCGTGTGCCCTAACAAACTAGTGAGCAGTCCCATTTGTTCCAATGAAGTGCAGTTATAGTCCAAAATAACAGGTCGAGAAAACTTTGAAACCAAATGCCATGTCGTGGTAGATCAACCTACAGTGGGTCCATGTTGCAAGCTTACACCATCAGTCATTGGCTGCATCTCTGATAATAGACTATACAGAACAATAAATGAGATGCCAATCCATTTGTAAATTTTTCTTTCAGACATAAGAATAATGCTTGTCTTAAACTTGCTATGATCTTAAAGGTTTACCATTTAGAATTGTCTAATACATGTTAGCTTGTGTGTATTAAGAGATGTGCATAATGCTTCTCCATAGGTCTTACTTATCCATTACAAGGAGTCAAATTCATTTCCTAGCTCATGAATGATCTTTGTCTCAATTGGTCTATTCATGTCCCTTTCTCCACTCACTTTATTTTCCTGGTATGTTTTGTTCGTAGCATCCTGTGCTGATATTATAGAAATAGCCTATAAAAATGTATTCACAAACTTCATATTTTCTGTTCTGTTTCTAGTGTTTTGAGAAATTCTTGTATCTTATGTTTTCTCCCCTCATGGGATACCAAAAGATAAGGGGACCTTCTCCAGTTTATGTTGATTCAAATTTGACTTCCACTTGTCGAAAAGTTCAATGCATCGAAGTCTATGGATGTGGCCATGAGCTATTGTTGGGGAAAACAAGAGAGATAATTCTTGATTCAAGCTTCATTTTTAAACCAGCTGCTCTTTTAGTTTTTGGTTGGCTATACAGGAATTCATCCAAGACATAGAATGGTTGAGAAATTTGCATAGCAGAAATCTCAGTTTTTCGTACATAGATCAACAGACTTGAAAGAGGTTGCATGGTCTTGCCACAGCTTAAGATTGATAAAGTTGGTGGCCTGCTCTCCAAGGCTAGCACAATTACTTTGGGTCCAGAGGAAGAGTTATTAACAGACTGCTGGACTTGCTTAAAGGTTGAGAAGCTACATATGTTTGTCCCCTAGATTCTATCAATTTGTGCAGAATCTAGTACTCAGAGTTGAGGAAGAAAGATGAAGCACCGTATGAGAGATAGGTAGACATTTTTGAATTGTGAAAAAATCTAAGTTGGATGGATGTCATTTTGTGCTCCTAACGATCAGTATGGAGAAAGGTTTACTAAGCGCTCTATGTCTTAAATGGTAGGAAATACTAAGCTCCAAATGATCATTTTGTGCTCCTAGTGATCAGTATAGAGAAAAGATTCAGATCTAAGCTGGATTTGAACCGATCAAATGACAAAAGGAAAGACTTAGGTGTGGCAAATGATTACAAGTTCTTTCAGACTCATTGTAATAATCCTCATATTTCATTGCCTATTGAGTCTTCTTTCAAATGAGCAATAGCCTGTTTTTTGCGGGATGTCTTATAGCATGACCACTTATACTTGCACACCATAATAATGAGACATCTGTTCACCCTGCTACTATCTGGTCTCAATATTGTGGTTTTTGCTTATATATAGCTACCAAGAATTTGCTCAAGTATGCCAAGAGTGAGGCCACAAAATATGTCTTGGTTGCATAGTACAGTGATGCCACACCGTCAGGTGATCGTATTAGAACTCCTCTTCTGTTTGACTTGGCAGTTCCTAATGATGGTAGAACTTTGTGGATGATTTATGCCTCTAAGAGTTGGCATGTTTTGACTAAGCTATGTAGTTTGACTTGGGCTTTTTGTTCTCCTTAATGAGAACCATTCTTTGATATGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGATATTGAGTCCAACGACGTAGCAGGTCACTCTCTCATGGAAAGCCATTCACATGGAGATTCTGTTCTTCCATTTTCAACATAA

mRNA sequence

ATGGGAATCCAGTTGCCTTTGATACTCCTCAATGCCAAGCAGGTTCTGAAAAAGCAAGCTATTTCTACAACATACCAATCTGATGTTCCAAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGAAAAAATCTTCATGAAACTGAAGGGATAGAAAAGGTGGAAGATTGTAGCTTGGATGTCAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCAGTTGGATGTTTAAATCCAAATTCTTCTTCTGCACTGCTGAGCAAAGCAGAAAAAGAAGGATGGTTTAGACTTGAAAGAGGTTGCATGGTCTTGCCACAGCTTAAGATTGATAAAGTTGGTGGCCTGCTCTCCAAGGCTAGCACAATTACTTTGGGTCCAGAGGAAGAGTTATTAACAGACTGCTGGACTTGCTTAAAGGTTGAGAAGCTACATATAGTCTCCTTTGACCTAGATATTGAGTCCAACGACGTAGCAGGTCACTCTCTCATGGAAAGCCATTCACATGGAGATTCTGTTCTTCCATTTTCAACATAA

Coding sequence (CDS)

ATGGGAATCCAGTTGCCTTTGATACTCCTCAATGCCAAGCAGGTTCTGAAAAAGCAAGCTATTTCTACAACATACCAATCTGATGTTCCAAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGAAAAAATCTTCATGAAACTGAAGGGATAGAAAAGGTGGAAGATTGTAGCTTGGATGTCAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCAGTTGGATGTTTAAATCCAAATTCTTCTTCTGCACTGCTGAGCAAAGCAGAAAAAGAAGGATGGTTTAGACTTGAAAGAGGTTGCATGGTCTTGCCACAGCTTAAGATTGATAAAGTTGGTGGCCTGCTCTCCAAGGCTAGCACAATTACTTTGGGTCCAGAGGAAGAGTTATTAACAGACTGCTGGACTTGCTTAAAGGTTGAGAAGCTACATATAGTCTCCTTTGACCTAGATATTGAGTCCAACGACGTAGCAGGTCACTCTCTCATGGAAAGCCATTCACATGGAGATTCTGTTCTTCCATTTTCAACATAA

Protein sequence

MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKRKNLHETEGIEKVEDCSLDVRLMKTSSLQGIVRPPVGCLNPNSSSALLSKAEKEGWFRLERGCMVLPQLKIDKVGGLLSKASTITLGPEEELLTDCWTCLKVEKLHIVSFDLDIESNDVAGHSLMESHSHGDSVLPFST

Homology

[Close]

BLAST of CmoCh02G003420 vs. ExPASy TrEMBL
Match: A0A6J1JHD8 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484393 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-09
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QSDVPKGH+AVY GEI++KR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSDVPKGHIAVYVGEIQKKR 45

[Close]

BLAST of CmoCh02G003420 vs. ExPASy TrEMBL
Match: A0A6J1FU78 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448827 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QS+VPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSNVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003420 vs. ExPASy TrEMBL
Match: A0A5A7TQ57 (Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001750 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+S   QSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003420 vs. ExPASy TrEMBL
Match: A0A1S4E2E4 (auxin-responsive protein SAUR21-like OS=Cucumis melo OX=3656 GN=LOC107991554 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+S   QSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003420 vs. ExPASy TrEMBL
Match: A0A6J1FYM2 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448834 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QS VPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSGVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003420 vs. NCBI nr
Match: XP_023512612.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-09
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 1   MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKRKNLHETEGIEKVEDC 60
           MGI+LP ILLNAKQ+LK QA+S   QSDVPKGH+AVY GEIERKR  +            
Sbjct: 1   MGIRLPSILLNAKQILKMQALSARNQSDVPKGHIAVYVGEIERKRFVV------------ 60

Query: 61  SLDVRLMKTSSLQGIVRPPVGCLNPNSSSALLSKAEKEGWFRLERGCMVLP 112
                             P+  L  +S   LL+++E+E  FR   G + +P
Sbjct: 61  ------------------PISYLKHHSFVDLLNRSEEEFGFRHPMGGLTIP 81

[Close]

BLAST of CmoCh02G003420 vs. NCBI nr
Match: KAG6571046.1 (Auxin-responsive protein SAUR19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-09
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQALSTRNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003420 vs. NCBI nr
Match: KAG6571050.1 (Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-09
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003420 vs. NCBI nr
Match: XP_022986728.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QSDVPKGH+AVY GEI++KR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSDVPKGHIAVYVGEIQKKR 45

[Close]

BLAST of CmoCh02G003420 vs. NCBI nr
Match: XP_022944361.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-08
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MGIQLPLILLNAKQVLKKQAISTTYQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILLNAKQ+LK QA+ST  QS+VPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKTQALSTRNQSNVPKGHIAVYVGEIQRKR 45

The following BLAST results are available for this feature:

BLAST of CmoCh02G003420 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHD8	8.4e-09	75.56	auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484393...	[more]
A0A6J1FU78	1.4e-08	75.56	auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A5A7TQ57	1.9e-08	75.56	Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S4E2E4	1.9e-08	75.56	auxin-responsive protein SAUR21-like OS=Cucumis melo OX=3656 GN=LOC107991554 PE=...	[more]
A0A6J1FYM2	2.4e-08	75.56	auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]

BLAST of CmoCh02G003420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512612.1	5.9e-09	41.44	auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571046.1	7.8e-09	77.78	Auxin-responsive protein SAUR19, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6571050.1	7.8e-09	77.78	Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986728.1	1.7e-08	75.56	auxin-responsive protein SAUR21-like [Cucurbita maxima]	[more]
XP_022944361.1	3.0e-08	75.56	auxin-responsive protein SAUR21-like [Cucurbita moschata]	[more]

BLAST of CmoCh02G003420 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003420.1	CmoCh02G003420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin