CmoCh02G003380 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G003380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	auxin-responsive protein SAUR24-like
Location	Cmo_Chr02: 1733363 .. 1733656 (-)
RNA-Seq Expression	CmoCh02G003380
Synteny	CmoCh02G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTCGGTTGCTATCTTTGGTTCCTCATGCCAAGCAAATTCTAAAGATGCAGTCAAGTTTTACCAAAAACCAGTTGGACGTTCCAAAAGGTCATGTGGCTGTTTATGTAGGAGAGATCCAACGGAAGCGGTTCGTGGTTCCGATATCTTACCTAAACCATCCATCGTTCCAGAAACTGCTCAGCCACGCCGAGGAGGAGTTTGGCTTCCATCATCCACAAGGGGGCCTAACAATTCCTTGCAGAGAAGATGCCTTCGTTGATCTCACTTCTAGATTGCAAGTTTCTTGA

mRNA sequence

ATGGGGATTCGGTTGCTATCTTTGGTTCCTCATGCCAAGCAAATTCTAAAGATGCAGTCAAGTTTTACCAAAAACCAGTTGGACGTTCCAAAAGGTCATGTGGCTGTTTATGTAGGAGAGATCCAACGGAAGCGGTTCGTGGTTCCGATATCTTACCTAAACCATCCATCGTTCCAGAAACTGCTCAGCCACGCCGAGGAGGAGTTTGGCTTCCATCATCCACAAGGGGGCCTAACAATTCCTTGCAGAGAAGATGCCTTCGTTGATCTCACTTCTAGATTGCAAGTTTCTTGA

Coding sequence (CDS)

ATGGGGATTCGGTTGCTATCTTTGGTTCCTCATGCCAAGCAAATTCTAAAGATGCAGTCAAGTTTTACCAAAAACCAGTTGGACGTTCCAAAAGGTCATGTGGCTGTTTATGTAGGAGAGATCCAACGGAAGCGGTTCGTGGTTCCGATATCTTACCTAAACCATCCATCGTTCCAGAAACTGCTCAGCCACGCCGAGGAGGAGTTTGGCTTCCATCATCCACAAGGGGGCCTAACAATTCCTTGCAGAGAAGATGCCTTCGTTGATCTCACTTCTAGATTGCAAGTTTCTTGA

Protein sequence

MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS

Homology

[Close]

BLAST of CmoCh02G003380 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 30 PKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCREDAFVD 89
          PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED F++
Sbjct: 25 PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 90 LTSRLQ 96
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of CmoCh02G003380 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 17 KMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T      PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 77 GLTIPCREDAFVDLTSRLQ 96
          GLTIPC ED F+++TSR Q
Sbjct: 72 GLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of CmoCh02G003380 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 17 KMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T      PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +E+EFGF HP G
Sbjct: 12 KILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMG 71

Query: 77 GLTIPCREDAFVDLTSRLQ 96
          GLTIPC ED F+++TSRLQ
Sbjct: 72 GLTIPCHEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003380 vs. ExPASy Swiss-Prot
Match: Q9FJF9 (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.9e-23
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 12 AKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGF 71
          AK+IL   ++        PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTASA-----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCREDAFVDLTSRLQ 96
           HP GGLTIPC ED F+++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 88

[Close]

BLAST of CmoCh02G003380 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-22
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 17 KMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQG 76
          K+ S  T      PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMG 71

Query: 77 GLTIPCREDAFVDLTSRLQ 96
          GLTIPC ED F+++TSRLQ
Sbjct: 72 GLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003380 vs. ExPASy TrEMBL
Match: A0A6J1G772 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111451397 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.7e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. ExPASy TrEMBL
Match: A0A6J1G6U7 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111451400 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LL HAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS
Sbjct: 61 LLGHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. ExPASy TrEMBL
Match: A0A6J1L403 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499684 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVP+AKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPNAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LL HAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Sbjct: 61 LLGHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. ExPASy TrEMBL
Match: A0A6J1G6T7 (auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC111451395 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQS FTK+QLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. ExPASy TrEMBL
Match: A0A6J1CWI9 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015449 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSSFTKNQ+DVPK HVAVYVGEIQRKRFVVPISYLNHPSFQ+
Sbjct: 1  MGIRLLSLVPHAKQILKMQSSFTKNQMDVPKSHVAVYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. NCBI nr
Match: XP_022947574.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata] >XP_023533291.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >KAG6605015.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia] >KAG6605021.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 7.7e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. NCBI nr
Match: XP_022947577.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata] >XP_022947578.1 auxin-responsive protein SAUR21-like [Cucurbita moschata] >KAG6605024.1 Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.7 bits (504), Expect = 2.2e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LL HAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS
Sbjct: 61 LLGHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. NCBI nr
Match: XP_023533295.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 8.5e-47
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MG RLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGTRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LL HAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS
Sbjct: 61 LLGHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. NCBI nr
Match: XP_023533293.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVPHAKQILK QSSFTKNQLDVPKGHVAVYVGEIQRKRFV+PISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPHAKQILKKQSSFTKNQLDVPKGHVAVYVGEIQRKRFVIPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LL HAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS
Sbjct: 61 LLGHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. NCBI nr
Match: XP_023007089.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 4.2e-46
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60
          MGIRLLSLVP+AKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK
Sbjct: 1  MGIRLLSLVPNAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          LL HAEEEFGFHHPQGGLTIPC+EDAF+DLTSRLQVS
Sbjct: 61 LLGHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQVS 97

[Close]

BLAST of CmoCh02G003380 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 120.9 bits (302), Expect = 5.5e-28
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQ 60
          M IR+  ++  +KQ+LK   S + N + +PKGH+AVYVGE +Q++RFVVP++YL+HP FQ
Sbjct: 1  MAIRISRVLQSSKQLLK-SLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 KLLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 98
          KLL  AEEEFGF HP GGLTIPC E  F+DL SRL  S
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTS 97

[Close]

BLAST of CmoCh02G003380 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-27
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MGIRLLSLVPHAKQILKMQSSFTKNQLD------VPKGHVAVYVG---EIQRKRFVVPIS 60
           MG+   ++    KQILK+ S   +N+        VPKGHVAVYVG   E+++KRFVVPIS
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCREDAFVDL-TSRLQ 96
           +LNHPSF++ LS AEEEFGF+HP GGLTIPCRE+ F+DL  SRLQ
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

[Close]

BLAST of CmoCh02G003380 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-27
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILK----MQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHP 60
          M IR+  ++  +KQIL+    + SS + + LDVPKG++AVYVGE   KRFVVP+SYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFQKLLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSR 94
          SFQ LL  AEEEFGF HP GGLTIPC E+ F+DL SR
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

[Close]

BLAST of CmoCh02G003380 vs. TAIR 10
Match: AT4G34790.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-25
Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MGIRLLSLVPHAKQILKMQSSFTKNQLD-----------VPKGHVAVYVGE-IQRKRFVV 60
           MG+ + S++P+AKQI K QS   KN              VPKGHVAVYVGE +++KRFVV
Sbjct: 1   MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSGLVPKGHVAVYVGEQMEKKRFVV 60

Query: 61  PISYLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQV 97
           PISYLNHP F++ L+ AEEE GFHH  GGLTIPCRE++F+ L +  Q+
Sbjct: 61  PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLYLITSHQL 107

[Close]

BLAST of CmoCh02G003380 vs. TAIR 10
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-25
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGE--IQRKRFVVPISYLNHPSF 60
          M IR LS V ++KQ  K QS        VPKGHVAVYVGE    +KRFVVPISYLNHPSF
Sbjct: 1  MAIR-LSRVINSKQSQKQQSR-------VPKGHVAVYVGEEMESKKRFVVPISYLNHPSF 60

Query: 61 QKLLSHAEEEFGFHHPQGGLTIPCREDAFVDL 91
          Q LLS AEEEFGF+HP GGLTIPCRE+ FV L
Sbjct: 61 QGLLSRAEEEFGFNHPIGGLTIPCREETFVGL 84

The following BLAST results are available for this feature:

BLAST of CmoCh02G003380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK62	2.3e-23	72.73	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
Q9FJG0	3.1e-23	64.56	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FJF7	3.1e-23	63.29	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S...	[more]
Q9FJF9	8.9e-23	60.71	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 S...	[more]
Q9FJG1	1.2e-22	63.29	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S...	[more]

BLAST of CmoCh02G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G772	3.7e-48	100.00	auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1G6U7	1.1e-47	98.97	auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A6J1L403	2.0e-46	95.88	auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499684...	[more]
A0A6J1G6T7	2.7e-46	94.85	auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1CWI9	2.7e-46	94.85	auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of CmoCh02G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947574.1	7.7e-48	100.00	auxin-responsive protein SAUR21-like [Cucurbita moschata] >XP_023533291.1 auxin-...	[more]
XP_022947577.1	2.2e-47	98.97	auxin-responsive protein SAUR21-like [Cucurbita moschata] >XP_022947578.1 auxin-...	[more]
XP_023533295.1	8.5e-47	97.94	auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo]	[more]
XP_023533293.1	1.4e-46	96.91	auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007089.1	4.2e-46	95.88	auxin-responsive protein SAUR21-like [Cucurbita maxima]	[more]

BLAST of CmoCh02G003380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21210.1	5.5e-28	59.18	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	1.2e-27	59.05	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	3.6e-27	59.79	SAUR-like auxin-responsive protein family	[more]
AT4G34790.1	2.0e-25	55.56	SAUR-like auxin-responsive protein family	[more]
AT4G34800.1	4.4e-25	68.48	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 12..93 e-value: 7.8E-27 score: 93.3
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 1..95
None	No IPR available	PANTHER	PTHR31929:SF51	AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003380.1	CmoCh02G003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin