CmoCh02G003370 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR21-like
LocationCmo_Chr02: 1729727 .. 1733175 (+)
RNA-Seq ExpressionCmoCh02G003370
SyntenyCmoCh02G003370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCAGACTACCTTCACTTCTCCTTAATGCTAAGCAAATTGTAAGAATGCAGACGGTTTCTTCAAGAAGCCAATGTGGTGTTCCAAAGGGTCATATTGCAGTCTATGTGGGGGAGACCGAAAGGAAGCGGTTTGTAGTTCTGATATCATACTTGAACCATCCTTCTTTCGTAGCTCTACTCAAGACAGCTGAAGAAGAATTTGGATTTAAACATCCAACAGGAGGTTTAACCATTCCTTGCAGAGAAGATGCCTTCCTCAACCTCACTTCTAGGCTGCATACTCCCTGAAAGAGAGGAAAAACAATCCTACACATAGTTTTGTAGAATTCCTTTCATTTTTTTCTTCTTTTTGCCACAGTTGAGGAGTAGAATGTCAATACATAGTTAGTACCAATTTGATGAAGAAGCAAAAGTTGATTCAACATCAATGTACAATTTATAATTGCAGAGATGTAAATAGAAATGGAGTCACATTTTCTTATAAAAAACTGCCTCCTTCGGCCTCTGAGTTTCAGTTTGTTTAAACTCTCAGTCTTTCCTTGATGTTTAGTCGGACGTTGGTACATTTTTTTTTTCATAGAAATAAAAGATCATTGAAGAAAAGAGACTAATGCTCAAAAGACACAAGCTCTCGAGAGGAAAAAGAGTATAAAAGAACCATAGAAAGCATTCCAATCCAATTCAAACATGTCTCATAAGGAAAATCCAGTAAAGGGATCAGATAAAGAACAGCAAAAAGACGCCTTAAAATGAGCTAATTCAAAACGGTTGATCCAAGAAAAATTCTCATCTTCAAACATCCTCTTAGTTAGTTTTACATTTTCTAACTTGGCTAATCAGTTGCTTCTTTCTTGAGGATTAGATGGAAATAGAAATCTTCCTTCATTTTTATGATAAATGCTCTGTGCTTGAGTTTTGTCAAATGTCTTGTTGCATGATAAAATGAGAAAATACACAGAACTTATATCTCATAATTCATGAATTAAAGGGATAAAGTTTATCGGTGAAAGAAATATAATTTTATAGTTGTGCCAACACAATTTTATACATGCTATAATGTTCAGGAAGATGGGCAAATTGAGGCTTTCTGATCCGTGCTTGATCTTACAATCACCAACTCGAAATAGGCTACCAAAGAGCAAATGTCGGCATATCTTCATCATCCGGTGGGCACTAGGATGTGAAGCTGGAAACAAAGATTCTTCCTTTGTTGACTGCTCTGGCTCGGTATTGTGTCAATTGGGGGTAATTAACCACCTTTTCTATCCCTTCAGATTCAATAAGAGTTTTTCTAACTAAAAATGAACAAAAGAATCTTGGGGATTTCTATTCGTGCATAATCTTTCAAACTATGTAACCTAGAAGTGAGATCAATGAAGACATCTTCTCTGTAGGGGATTGTCAAGCCGGCCATAGGATGATTGTATTCAAACTCTTCCTCAGCCCTCTTAAGTAAAGCCATGAATGTAGGATGGTTTTAAGTATGATATCGGAATTAAAAACCTCTTTCTTTGGATTTCTCCAACATAGACTGCAACGTGACCCTTCGAAACATCATATTGGTTTCTTGTAGAAATAGCTTGCTTTTTAAGAACCTGTTTTGGATTTCTCAAAAAGCAAGCTATTTCTACAAGAAACCAATCTAATGTTCCGAAGGGTCGTATTGCAGTCTATGTGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAAGATGTTTCAATTCATGCTACATTGAAGAAGAATGAAGTTTGATTGTTGTAAATTTTGGGTGGGTTACAATTTAGAGTAATTTAGAGTTATTGTATTTTAAGACTTGTTATTTAATTTCGGTTACATTTACATAATGGCTAATTATGGCCATAAAGTAGGAATGTTACAACTTTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATCTATGTTGTATTTGTAAGAGAGACTTAGAAGATATATCAAAAGAAGCATTTGTGCTTTTCTTTAGCCAATGGCTAATTTTCTTTGCAATTCTATGTAGTTTAGATTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTCTTGACTTGAGATATTCGATCAACAAGGTAATCTGAATCTTACTCCCCTTGTAGTGATTCCTTATCTTATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCCTTTGCGTTTCTTCTCAATTTAATTTTTATTTATTTTCATCTTTTTAGTTTTTAATCGACCCAAAGTTCAAAATTCAATCTTTGCTCTATTTAAAATTTTGAGAGGTGAGAATGAGAGCTTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAAGATGTTTCAATTCATGCTACATTGAAGAAGAATAAAGTTTGATTGTTGTAAATTTTGGGTGGGTTATAATTTAGAGTTATTGTGTTTTAAGACTTTTTATTTAATTTCGGTTACATTTACATAATGGCTAATTATGGCCATAAAGTGTGAATGTTACAACTTTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGAGAGACTTAGAAGATATATCAAAAGAAGCATTTGTGCTTTTCTTTAGCCAATGGCTAATTTTCTTTGCAATTCTATGTAGTTTAGATTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTCTTGACTTGAGATATTCGATCAACAAGGTAATCTGAATCTTACTCCCCTTGTAGTGATTCCTTATCTTATCACTATGTTAGAGAAATTCAAAGGAACCTACTTTGGATTCAGTTTGCTTTGGATCTGTTTGAACTTAGAAGTTTGAATCTTCAAGATGCTGCTTAGTTTCTTTAGTGATGTGCTATGCTCTAGCAACAATTTTTCTTTGTTCCATGGATTGCAGGTTACCATCACAAATAAAGCAACAAAGAAAAGGCTATATAGAAATTGA

mRNA sequence

ATGGGAATCAGACTACCTTCACTTCTCCTTAATGCTAAGCAAATTGTAAGAATGCAGACGGTTTCTTCAAGAAGCCAATGTGGTGTTCCAAAGGGTCATATTGCAGTCTATGTGGGGGAGACCGAAAGGAAGCGGAAGATGGGCAAATTGAGGCTTTCTGATCCGTGCTTGATCTTACAATCACCAACTCGAAATAGGCTACCAAAGAGCAAATGTCGGCATATCTTCATCATCCGGTGGGCACTAGGATGTGAAGCTGGAAACAAAGATTCTTCCTTTGTTGACTGCTCTGGCTCGGTTACCATCACAAATAAAGCAACAAAGAAAAGGCTATATAGAAATTGA

Coding sequence (CDS)

ATGGGAATCAGACTACCTTCACTTCTCCTTAATGCTAAGCAAATTGTAAGAATGCAGACGGTTTCTTCAAGAAGCCAATGTGGTGTTCCAAAGGGTCATATTGCAGTCTATGTGGGGGAGACCGAAAGGAAGCGGAAGATGGGCAAATTGAGGCTTTCTGATCCGTGCTTGATCTTACAATCACCAACTCGAAATAGGCTACCAAAGAGCAAATGTCGGCATATCTTCATCATCCGGTGGGCACTAGGATGTGAAGCTGGAAACAAAGATTCTTCCTTTGTTGACTGCTCTGGCTCGGTTACCATCACAAATAAAGCAACAAAGAAAAGGCTATATAGAAATTGA

Protein sequence

MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKRKMGKLRLSDPCLILQSPTRNRLPKSKCRHIFIIRWALGCEAGNKDSSFVDCSGSVTITNKATKKRLYRN
Homology
[Close]
BLAST of CmoCh02G003370 vs. ExPASy TrEMBL
Match: A0A6J1KXM0 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQ+VRMQTVSSRSQCGVPKGHIAVYVGE ERKR
Sbjct: 1  MGIRLPSLLLNAKQVVRMQTVSSRSQCGVPKGHIAVYVGEIERKR 45

[Close]
BLAST of CmoCh02G003370 vs. ExPASy TrEMBL
Match: A0A6J1FVH4 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448819 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-14
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIV+MQTVSSR+QCGVPKGHIAVYVG+TERKR
Sbjct: 40 MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKR 84

[Close]
BLAST of CmoCh02G003370 vs. ExPASy TrEMBL
Match: A0A6J1CWI4 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015447 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIVRMQT SSR+QCGVPKGHIAVYVGE ERKR
Sbjct: 1  MGIRLPSLLLNAKQIVRMQTASSRNQCGVPKGHIAVYVGEIERKR 45

[Close]
BLAST of CmoCh02G003370 vs. ExPASy TrEMBL
Match: A0A6J1FVI6 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448837 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIV+MQTVSSR+QCGVPKGHIAVYVG+ ERKR
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKR 45

[Close]
BLAST of CmoCh02G003370 vs. ExPASy TrEMBL
Match: A0A6J1JGW3 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484395 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQ+V+MQTV SR+QCGVPKGHIAVYVG+ ERKR
Sbjct: 1  MGIRLPSLLLNAKQVVKMQTVPSRNQCGVPKGHIAVYVGDIERKR 45

[Close]
BLAST of CmoCh02G003370 vs. NCBI nr
Match: KAG6605014.1 (Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR
Sbjct: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 45

[Close]
BLAST of CmoCh02G003370 vs. NCBI nr
Match: XP_023533283.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533284.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533285.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-14
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGE ERKR
Sbjct: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGEIERKR 45

[Close]
BLAST of CmoCh02G003370 vs. NCBI nr
Match: XP_023007087.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQ+VRMQTVSSRSQCGVPKGHIAVYVGE ERKR
Sbjct: 1  MGIRLPSLLLNAKQVVRMQTVSSRSQCGVPKGHIAVYVGEIERKR 45

[Close]
BLAST of CmoCh02G003370 vs. NCBI nr
Match: KAG6571049.1 (Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-14
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIV+MQTVSSR+QCGVPKGHIAVYVG+TERKR
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKR 45

[Close]
BLAST of CmoCh02G003370 vs. NCBI nr
Match: XP_022944352.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata])

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-14
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQIV+MQTVSSR+QCGVPKGHIAVYVG+TERKR
Sbjct: 40 MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKR 84

[Close]
BLAST of CmoCh02G003370 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-05
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVR----MQTVSSRSQCGVPKGHIAVYVGETERKR 46
          M IR+P +L ++KQI+R    + + SS S   VPKG++AVYVGE   KR
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKR 49

[Close]
BLAST of CmoCh02G003370 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKRK--MGKLRLSDPC 57
          M IR+  +L ++KQ+++  + SS +   +PKGH+AVYVGE  +KR+  +    LS PC
Sbjct: 1  MAIRISRVLQSSKQLLKSLSHSS-NNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPC 57

The following BLAST results are available for this feature:
BLAST of CmoCh02G003370 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KXM02.4e-1495.56auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682... [more]
A0A6J1FVH44.1e-1493.33auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A6J1CWI41.2e-1393.33auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1FVI62.0e-1391.11auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A6J1JGW31.0e-1286.67auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484395... [more]
BLAST of CmoCh02G003370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605014.17.7e-15100.00Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023533283.13.8e-1497.78auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533284.... [more]
XP_023007087.15.0e-1495.56auxin-responsive protein SAUR21-like [Cucurbita maxima][more]
KAG6571049.18.5e-1493.33Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022944352.18.5e-1493.33auxin-responsive protein SAUR21-like [Cucurbita moschata][more]
BLAST of CmoCh02G003370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G38840.14.5e-0548.98SAUR-like auxin-responsive protein family [more]
AT2G21210.11.7e-0441.38SAUR-like auxin-responsive protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003370.1CmoCh02G003370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin