CmoCh02G003360 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 1727779 .. 1729605 (-)
RNA-Seq ExpressionCmoCh02G003360
SyntenyCmoCh02G003360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGAAGGAGAAAGGGTGAGAAGAAAGGACGTTGAGTCGGTGTCGAAAGGACCTACTTCATTAATGGCTCACATGGAGTGTCCATTGGTTGGAGAACATTCACTTCATGTGTTGCTGCTGCTGGTGCTCTGGGCCCTATTGATCTAAAACAAGATATCCAAGGGAAAATCCAAAACCAAATGCCATATACAGCTAAATTAACTTAACACTCAGTTTGTAAATAAGATACTGTCCCACACACAACGAAAAGAACTGTCTCAAACATGTCTCAAACTCATGTGCTCTATCATCAGCAATCTTTTCTAGGTTTGCCCCTCTCTGTTTCTCCACTCATCTTATTTTCTTGATGGTTTTATCCTTAGCATCTCATGCTGATATTATATATACAGCCGTAGACATTGAATCTACAAGCAGTTGGTTGGGCTTAACAGTCATAAGATTCATCCACAGCAGATGGAATCAACATTGTATTGGCTGAAAGGAGCCGGATGACTGCTGTAATGACCATATTTTGAAAAATATTAGAACGAAGTATTTCAATCTGCAGATAGTTTATACAGACAAAAGCATTAGATATTTTCCTCTACGTTCTGATCCTTATGTTGACAGAGATGGAAAACGTACATCTCTGGTCATGGTTGCTGAAAATCTCAGCTTATTATGACATAGAGGGTATGAAGTCAATCTCCATTTGTACATTTCAAGATTTGGTTAGTGTCAACTCCACATGCATTTTGTTCTACGAACAGAATGCGGTTGTGTTTACGGGATTTGGACATCTTTAAATACAAAGTTTGTCTTTCTGTTCAATTTTGAACATGTACGCAAAAAAAATATCCACTTTTGCAGTTCAGACAGCAATAAACAGACAGAGTATCAAAGAATAAGTGAGAGAAACAGGAAATGATACTGTGAGTCTAGTAAGTGTTGGTAATAAATTAACCAGCAAAGGAACTCATTTCCATTCCAAAAGGCTTGACATTGTCTTTCTACACAACAATCTTCCAGGAGTTGGAAGAAACAAACACGCTAGGAGGAAAAATGTGTAAAAACTGGTTGATGCCTATTCCATTATCTTCAGCCCACAGGAGTGTTGTAATCTAGAAGTAAGATCAATGAATGCATCCTCTTTGCAAGGAATTGTTAGACCTCCAAGTTCATGATGGTGACCGAACTCTTCTACTCGGTTGAGTAGCTGTTGGAATGAAGGATTGTTCATATATGAAACAAGAACCACAAATCGCTTTCGTTCTTTGGATCCTTCCCACATACTGCAACATAACCACTAGGAACATGATTTTGTCAGGTCAAACAAAATTTCTATTTCCATCCCATCCTTTCTCTTGCATCCCATTTGTGTTTGATATGCAACTTGCTAAATCATAGACCTACATGTAGTTAAATTCCCAAACAACACCGTGCTTGTTCCAATGGAATAAAGCATCAAAACAGATGGCTTTGTAAGGAAAAGTTAAAAATAATCCAACATATCCTTGTGATTGGACCTCCTTGCAAGAGGAAATTGCTTCATCATTGGCCCCAGCTTCTAGGCAAGGGGAAGTCAATTCACATGTACCAAATGCTTTAAATCATATCATACCAACATCTCAGCTATCATTTGATTCACAGCTTGGTTTGTTGAGTTTATATCACGAGGATTGGAGTGCCTATCACATGATATGTTGCTCATTTATCTTCCAAGATATTGAAAAACTTGTGAAATTTTCTTAGCCTCTTGTAAAAGGAAAAAGCGGGGCCAGTGAGAAAGTGACTGAAATTCTAATGGATAGAGCAAACCCATGTGAGCCTTTGAAGAAGTAG

mRNA sequence

ATGGATTCAGAAGGAGAAAGGGTGAGAAGAAAGGACGTTGAGTCGGTGTCGAAAGGACCTACTTCATTAATGGCTCACATGGAGTGTCCATTGGTTGGAGAACATTCACTTCATGTGTTGCTGCTGCTGACAAAAGCATTAGATATTTTCCTCTACGTTCTGATCCTTATGTTGACAGAGATGGAAAACGTACATCTCTGGTCATGGTTGCTGAAAATCTCAGCTTATTATGACATAGAGGGAAAAGTTAAAAATAATCCAACATATCCTTGTGATTGGACCTCCTTGCAAGAGGAAATTGCTTCATCATTGGCCCCAGCTTCTAGGCAAGGGGAAGTCAATTCACATGTACCAAATGCTTTAAATCATATCATACCAACATCTCAGCTATCATTTGATTCACAGCTTGGTTTGTTGAGTTTATATCACGAGGATTGGAGTGCCTATCACATGATATGTTGCTCATTTATCTTCCAAGATATTGAAAAACTTCCTCTTGTAAAAGGAAAAAGCGGGGCCAGTGAGAAAGTGACTGAAATTCTAATGGATAGAGCAAACCCATGTGAGCCTTTGAAGAAGTAG

Coding sequence (CDS)

ATGGATTCAGAAGGAGAAAGGGTGAGAAGAAAGGACGTTGAGTCGGTGTCGAAAGGACCTACTTCATTAATGGCTCACATGGAGTGTCCATTGGTTGGAGAACATTCACTTCATGTGTTGCTGCTGCTGACAAAAGCATTAGATATTTTCCTCTACGTTCTGATCCTTATGTTGACAGAGATGGAAAACGTACATCTCTGGTCATGGTTGCTGAAAATCTCAGCTTATTATGACATAGAGGGAAAAGTTAAAAATAATCCAACATATCCTTGTGATTGGACCTCCTTGCAAGAGGAAATTGCTTCATCATTGGCCCCAGCTTCTAGGCAAGGGGAAGTCAATTCACATGTACCAAATGCTTTAAATCATATCATACCAACATCTCAGCTATCATTTGATTCACAGCTTGGTTTGTTGAGTTTATATCACGAGGATTGGAGTGCCTATCACATGATATGTTGCTCATTTATCTTCCAAGATATTGAAAAACTTCCTCTTGTAAAAGGAAAAAGCGGGGCCAGTGAGAAAGTGACTGAAATTCTAATGGATAGAGCAAACCCATGTGAGCCTTTGAAGAAGTAG

Protein sequence

MDSEGERVRRKDVESVSKGPTSLMAHMECPLVGEHSLHVLLLLTKALDIFLYVLILMLTEMENVHLWSWLLKISAYYDIEGKVKNNPTYPCDWTSLQEEIASSLAPASRQGEVNSHVPNALNHIIPTSQLSFDSQLGLLSLYHEDWSAYHMICCSFIFQDIEKLPLVKGKSGASEKVTEILMDRANPCEPLKK
Homology
[Close]
BLAST of CmoCh02G003360 vs. ExPASy TrEMBL
Match: A0A0A0LJ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258810 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 29/45 (64.44%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 149 YHMICCSFIFQDIEKLPLVKGKSGASEKVTEILMDRANPCEPLKK 194
           YHM CC   F      PL   KS ASEKVTEI+MDRA PCEPLKK
Sbjct: 74  YHMACCLVKFSS----PLCYWKSWASEKVTEIIMDRAIPCEPLKK 114

[Close]
BLAST of CmoCh02G003360 vs. NCBI nr
Match: KGN61885.1 (hypothetical protein Csa_006730 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-04
Identity = 29/45 (64.44%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 149 YHMICCSFIFQDIEKLPLVKGKSGASEKVTEILMDRANPCEPLKK 194
           YHM CC   F      PL   KS ASEKVTEI+MDRA PCEPLKK
Sbjct: 74  YHMACCLVKFSS----PLCYWKSWASEKVTEIIMDRAIPCEPLKK 114

The following BLAST results are available for this feature:
BLAST of CmoCh02G003360 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ032.3e-0464.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258810 PE=3 SV=1[more]
BLAST of CmoCh02G003360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61885.14.7e-0464.44hypothetical protein Csa_006730 [Cucumis sativus][more]
BLAST of CmoCh02G003360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003360.1CmoCh02G003360.1mRNA