CmoCh02G003340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 1721546 .. 1725445 (+)
RNA-Seq ExpressionCmoCh02G003340
SyntenyCmoCh02G003340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAAGCTCTCGAGCTTTTCAACGCGGCCCGTATCCGAAACTTTCAAGCGAGGGATGATCTTTTGATCCCGTAGCTTCCTAATTCGATAATGCATTGCTGCAATGATGATCAATCCAATCGAAGAAGCCCAAACTATCTGCGCAAAGCTCGGTTTGCTGCCGCTATCTGTAAGAAAATCCGACACAAGCCACAAATCAAATCGAATCAATTCAAAACCTGGCGAAAACGAAAGAGAAGGTAAATCCATTCCTTGTATATCATACTGTAATCCTACCTTTCTGCATGTTTTTTTAATTTTACGAAATGCCTTCGACTTCGAAGTTGTTCTCTCTAATTTGCGATTGACCGAGAGAAGAATAAGAAGAAGGTGGATGCAGGAACATTCTGTTCAATTCGTTTGAATTGTTTTTGCCGTTGCATGTTACCTCTGTGTAGTTTGTTCGAAACGTCGGAATGAATAGTGAGATTGTTAGCGTAGAACCATCAATTTGCCTTCAATGGGATAACTTATTTCTTGTTCTTTTAGTTTGAGCTTTCAATAGCTGGAACTGCATTTGCTATTTTGGGTCGTTTTTTTGGTAGAATTTGAAGATGACAAAGAGAAGAAAACTGGAAATATCAATGGCTATTTATAGGCTAAACTCAAATTTCTAGAAATGTTATTTGATCTAAAATTGTTTATTTATAGTTAATATTTCTTTGTGGTGTAAAATTATATCCTCAGTAACCACTGATTAGTTTGTGGTTAGTAATTCTTGGTCAATTTTTATGGTGTGATTTTCTTTCATTTACTTGATGAAACTTTGGAATTTCATAACTTTTGTAAATTGTGTTATCTAGTAACTTCATTAATACGAATACATAATTTACAGTTTCTACTTTTAAGACGAGAAAGTGCATGGAATTTGGAAGTAGATTCTCATCCTGACTTGGTGAACTTGTTTGTTGTATTTGGCGTTCTTCCCATTGATGAAGAACTTCGTGTCAAAAATGTCAAAAAATGTCTCGAATCAAATTTTATGGCAGCCCCCTTCACCGCTCGTTTACATGGTGAACACTGCTGCCTCTTTCTCTTTGCTAAATTTAATAGCGGGCCAGTTCTCTTCATTCCTGGGTGTGGCAACTCTGATCTTGAGGAGGGATTAGCAGCGCCAATTGGCTAATTTGGCACTTGAATCTCAGCAGGATTCACGATGAATTCTTCATAACCTAGCTTGGAAGTCATAGTGTGATTTTTTAGAAGTGATTGAAGCTGTGTTGGTTTATTATGAAGGTCTTAAAAGCTTGTGAATTTTGATTACAGTGAATTCTTCTTGGACAGTTTTTTATTCCCGAGGAGTTCCCTTGTGTTCTTTGCATTTGTTCTTTCTCCTTGCCACTTTTTTTCTCGCATTTACTTAAGAGTAACTGAAGCTCATTTTTCTACTTAATACACCAGTTCTTATTGAAATTAGATGCAGAAGCGATTATGTTAAAGCAACGAGAGAAGAGCAAGTAACTAATAAAAATTGAAATTCATGAGCTGAAGAGATTTTTTATATGAGAAGAGCGTTACTTTCATTGCTCAAACCAAGTCATTGTACAAGTATTATCCTATTCTACTTCCTAAATGTTTGGTGACAAAACTGTGATCAAGAACATTTTCTTTTTGTTCTTTCAATTTTCAGGATGTGTGCAGTCTAGAAGTAAGATTTAGGAAGGCATCTTCTCTGCACGGAATCGTCAAACCGCCCATCGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAATCTACAAAAGAAGATGCTTCAGGTATGATATTGGAACCACAAATCTTTTTCTTTGAATCTCTCCCACATAGACTGCAATATGGCCTTTGGGAACATCAAATTGATTTCTGGCAGACATAGCTTGCATTTTCAGAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGAATCCCATATTGAAAATTTCCTCGAAAAAAGAGAAGCGGTATTCTGCTTATATGGATTTAAATGTAGGAAATAGAGAGTACTTGTTGGATGAGCATAGCTTTATTTCTTATGTGTATTTATGAACTAGGAACTGGAGAGAACGAAAGGAGTAAAGCAGATAGGAGTCTGAGAGGTCCTACTTCTCCAAAGGCTCACATGGGTTTGCTCTATCCATTAAAATTTTAGTCATTCCTCTCTGATCCCACTTTTTCCAATAATAAGAGGCCAATAAAATTTCACCAAGTTCGTCAATATCTTGGAAGATGAGTAGCAACATACCATGTGATACTCTCCAATCCTCATTAAGTGCTTCTTTAGTGGACCTAGTGCAGTGGCTGAGAAAACACTGGTCCACATGATATCCATTAACTCAACAAACCAAGCTGTGAATCAAATGAAAGCTGAGATGTTGATATAATATGATTTAAAGCATTTGGTACATGTGAAGTGACTTCCCTTACCTAGAAGCTGGGTCCAATGATGAAGCGATTTCTTCTTGCAAGGAGGTCCAATCACAGGTATATGTTGGCTTGTTTTTACCTTTTCCTTACAAAGCCATCTGTTTTGATGTGTTATTCCATTGAAACAAGCATGATGTGGTTTGGAAATTGAACTACAATTGGGCCTATAGTTTAGCAACTTGTGAATCACATATCAAACTCATATGGGAGCCAAGGAAAAGGATGAGATGGAAATAGAAAATTCTTGTGAGCTGACAAAGTCATAGTAAGTGGGTCCTCTCAGTTGTTGAAAGACCGATACAAGAGAGGCCCACTTTTAAAACTCATTGAAAATACCCAGGCTATTTCTTTCTTCATAACTATATAAGTATAGAACCCAAAGGAGTTTCAATTACTAGATTGAACCCTGATATTCTAGGACTCGCTTCCAACTTCTTTGACGCCAATCAAGGCTAAACTTCAGATTTTTTTATAGTCTCTTGACCATTGAAAGTAGATTTGATAATGGGGATTCTTAGCAAATTCTCAAGATGCAGCTGGGTTTTACCAAATGGCAGTCAGATGTTGTCCTTAGCGGTCATGTTGTAGTATACGTGAGAGATGTCGGGTTCATCCCTCATTTCAAGAGCTACTCAACCGAGTAGAAGAAGAGTTCAGTTACCATCATCAACAAGGAGGCCTCACAATTCCTTGCAAAAAGGGCGCCTTCATTGATCTTACTCTAAATTACAAGAAGATAAAGATGATTAGCTACTCAACCGAGTAGAACAAGGAGGTCTCACAATTCCTTGCAAAGACGGCCTTCGATCTTACTTCTAGATTACAACACTCTTGAAGGATGAAGATGATTTTATAGCCATTAATCAATTTTGGCACATTGTTTCTCCTAACTTGTTTTCTTTGTAACTTCTTCTCAAATGTTGGTAGAAATGCAATCTAATACCTTTTGGAATGCAAATGAGTTGGTGAATTTCCTACCAAAACGTAATACAAATAGATTTTTCAGTATCATTTCCTGTTCTTTTGCTTATTTCATTGACTCTGACTGTTCATTGCTATCTAAGCTGTAGAAGTCAATATTTTTCACGATTGTACATGTTTATAATCGAACAGATCGACAACAATGCAGGTGGAGTTTACAATAATGAAATGATGGATTGAATGTTGCTACAAATGGAGATTGAATTCATAGCCTTTGTCATGGTCATTTATGAGACCCAGCTAATATCTCATACGCAGCAGCTGCTCCTTTGGTTTTATGATGAGTAAACTGATGTTATTAGCAACCATGACCATAGTTGTACATTTTGTACATCTCTATCAATACAAGCATCACAACTTGTTTGTGAAATAGTTGGCTTTCTCGATCTAAGTCACGTTTTTCTTGATAGTCTCTTTGGTCTAGAGCTTTATGTTGTGAATGTCTCGACATTGATCCTATTGTGC

mRNA sequence

ATGGGGAAAGCTCTCGAGCTTTTCAACGCGGCCCAAAATCCGACACAAGCCACAAATCAAATCGAATCAATTCAAAACCTGGCGAAAACGAAAGAGAAGGATGTGTGCAGTCTAGAAGTAAGATTTAGGAAGGCATCTTCTCTGCACGGAATCGTCAAACCGCCCATCGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAATCTACAAAAGAAGATGCTTCAGACATAGCTTGCATTTTCAGAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGAATCCCATATTGAAAATTTCCTCGAAAAAAGAGAAGCGGAACTGGAGAGAACGAAAGGAGTAAAGCAGATAGGAGTCTGAGAGGTCCTACTTCTCCAAAGGCTCACATGGGTTTGCTCTATCCATTAAAATTTTAGTCATTCCTCTCTGATCCCACTTTTTCCAATAATAAGAGGCCAATAAAATTTCACCAAGTTCGTCAATATCTTGGAAGATGAGTAGCAACATACCATGTGATACTCTCCAATCCTCATTAAGTGCTTCTTTAGTGGACCTAGTGCAGTGGCTGAGAAAACACTGGTCCACATGATATCCATTAACTCAACAAACCAAGCTGTGAATCAAATGAAAGCTGAGATGTTGATATAATATGATTTAAAGCATTTGGTACATGTGAAGTGACTTCCCTTACCTAGAAGCTGGGTCCAATGATGAAGCGATTTCTTCTTGCAAGGAGGTCCAATCACAGGTGGAGTTTACAATAATGAAATGATGGATTGAATGTTGCTACAAATGGAGATTGAATTCATAGCCTTTGTCATGGTCATTTATGAGACCCAGCTAATATCTCATACGCAGCAGCTGCTCCTTTGGTTTTATGATGAGTAAACTGATGTTATTAGCAACCATGACCATAGTTGTACATTTTGTACATCTCTATCAATACAAGCATCACAACTTGTTTGTGAAATAGTTGGCTTTCTCGATCTAAGTCACGTTTTTCTTGATAGTCTCTTTGGTCTAGAGCTTTATGTTGTGAATGTCTCGACATTGATCCTATTGTGC

Coding sequence (CDS)

ATGGGGAAAGCTCTCGAGCTTTTCAACGCGGCCCAAAATCCGACACAAGCCACAAATCAAATCGAATCAATTCAAAACCTGGCGAAAACGAAAGAGAAGGATGTGTGCAGTCTAGAAGTAAGATTTAGGAAGGCATCTTCTCTGCACGGAATCGTCAAACCGCCCATCGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAATCTACAAAAGAAGATGCTTCAGACATAGCTTGCATTTTCAGAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGAATCCCATATTGAAAATTTCCTCGAAAAAAGAGAAGCGGAACTGGAGAGAACGAAAGGAGTAA

Protein sequence

MGKALELFNAAQNPTQATNQIESIQNLAKTKEKDVCSLEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKEDASDIACIFRICLALRRIDGKRNPILKISSKKEKRNWRERKE
Homology
[Close]
BLAST of CmoCh02G003340 vs. NCBI nr
Match: KAG6605012.1 (hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 38 LEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKE 75
          LEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKE
Sbjct: 33 LEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKE 69

The following BLAST results are available for this feature:
BLAST of CmoCh02G003340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605012.15.3e-11100.00hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh02G003340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003340.1CmoCh02G003340.1mRNA