CmoCh02G002330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G002330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 1103344 .. 1104046 (-)
RNA-Seq Expression	CmoCh02G002330
Synteny	CmoCh02G002330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACGGAGAGCCCTTCCACACAGAACTCCTGGATCACTCTGAGTGACTAGAGGTAAGCTTGATGGTGCCATATTTGACTTGAAATGAAACATATATTCATATTGTCTTTCTTAATCAATTGATTTGCAGTTTTCAGTTAAGGATTATACATCTTATGTTAGCTCTAAAGGATTATTGGCTTGATTACTTGCAACCCTTCATCACCTCCTTCGAACGGTCGTGGGCTCGCTTTCGCTGTATGAGACTGGATGACTTCTGGGTTGGTAATGCTCTTTCTTCTTCTTCTTCTTCAGAAACTATTTCTTTACATTGGATAGATCAATGGCTACTGAACATCTCGAAACGAAACCAATCGGTTCGGTTGAACATCGATTTTCAAGTCGATTGGTTCAGTTGGTCGTCCATCTTTAGAAAAACCATTGCTGTTGTTGTTCTGTTATCAGTTTAAATCAAAAATCTTGTTGTCTTGGTAGATTCCTATTGATTGATTACTGTTTTGGCTGTATTACATATCTAAGCTGAAGAATTAAAGAGTTCTTCAAATGATGTGAAAAGTTAAAGATTTCTTGTCCTCGTACCATATCTAAGCTGAAGAACTAGAACCCATTTTTTGTAGAAGAGAGAAAAGAGTTGGGGGAAGTTCATTCGTTATGCTCATCTGTTATAATGGCTGCTAGCTCCCATATTCTAAGCATTAG

mRNA sequence

ATGGGCAACGGAGAGCCCTTCCACACAGAACTCCTGGATCACTCTGATTTTCAGTTAAGGATTATACATCTTATGTTAGCTCTAAAGGATTATTGGCTTGATTACTTGCAACCCTTCATCACCTCCTTCGAACGGTCGTGGGCTCGCTTTCGCTGTATGAGACTGGATGACTTCTGGGTTGGTAATGCTCTTTCTTCTTCTTCTTCTTCAGAAACTATTTCTTTACATTGGATAGATCAATGGCTACTGAACATCTCGAAACGAAACCAATCGGTTCGGTTGAACATCGATTTTCAAGTCGATTGGTTCAGTTGGTCGTCCATCTTTAGAAAAACCATTGCTGTTGTTGTTCTGTTATCAGTTTAAATCAAAAATCTTGTTGTCTTGGTAGATTCCTATTGATTGATTACTGTTTTGGCTGTATTACATATCTAAGCTGAAGAATTAAAGAGTTCTTCAAATGATGTGAAAAGTTAAAGATTTCTTGTCCTCGTACCATATCTAAGCTGAAGAACTAGAACCCATTTTTTGTAGAAGAGAGAAAAGAGTTGGGGGAAGTTCATTCGTTATGCTCATCTGTTATAATGGCTGCTAGCTCCCATATTCTAAGCATTAG

Coding sequence (CDS)

ATGGGCAACGGAGAGCCCTTCCACACAGAACTCCTGGATCACTCTGATTTTCAGTTAAGGATTATACATCTTATGTTAGCTCTAAAGGATTATTGGCTTGATTACTTGCAACCCTTCATCACCTCCTTCGAACGGTCGTGGGCTCGCTTTCGCTGTATGAGACTGGATGACTTCTGGGTTGGTAATGCTCTTTCTTCTTCTTCTTCTTCAGAAACTATTTCTTTACATTGGATAGATCAATGGCTACTGAACATCTCGAAACGAAACCAATCGGTTCGGTTGAACATCGATTTTCAAGTCGATTGGTTCAGTTGGTCGTCCATCTTTAGAAAAACCATTGCTGTTGTTGTTCTGTTATCAGTTTAA

Protein sequence

MGNGEPFHTELLDHSDFQLRIIHLMLALKDYWLDYLQPFITSFERSWARFRCMRLDDFWVGNALSSSSSSETISLHWIDQWLLNISKRNQSVRLNIDFQVDWFSWSSIFRKTIAVVVLLSV

Homology

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BLAST of CmoCh02G002330 vs. NCBI nr
Match: KAG6604914.1 (hypothetical protein SDJN03_02231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.1 bits (492), Expect = 6.9e-46
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 25  MLALKDYWLDYLQPFITSFERSWARFRCMRLDDFWVGNAL-SSSSSSETISLHWIDQWLL 84
           ML LKDYWLDYLQPFI SFERSWARFRCMRLDDFWVGNAL SSSSSSETISLHWIDQWLL
Sbjct: 1   MLTLKDYWLDYLQPFIASFERSWARFRCMRLDDFWVGNALSSSSSSSETISLHWIDQWLL 60

Query: 85  NISKRNQSVRLNIDFQVDWFSWSSIFRKTIAVVVLLSV 122
           NISKRNQSVRLNIDFQVDWFSWSSIFRKTIAVVVLLSV
Sbjct: 61  NISKRNQSVRLNIDFQVDWFSWSSIFRKTIAVVVLLSV 98

The following BLAST results are available for this feature:

BLAST of CmoCh02G002330 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G002330 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G002330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604914.1	6.9e-46	96.94	hypothetical protein SDJN03_02231, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh02G002330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G002330.1	CmoCh02G002330.1	mRNA