CmoCh02G002100 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G002100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 981976 .. 982700 (-)
RNA-Seq ExpressionCmoCh02G002100
SyntenyCmoCh02G002100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTAATTCAGAACATTCTACAAGTCGTTCTGTTTCAAGCCAACTTATCATCCATCGACGTTGCAAATTCGCAGCCAGTTGCTCATACTGTGGTCGAAGCTACTTTGTTGCCGTATGCAAACGCATACTTGAACGGGTTGCAACTGCTCACTGTCCATGGCTTCACGTTTCCAAATACCGATGTAATCAGCTCCTGCTCGAAAATTATGGTGTAGCAGCGACGTTCGTAAAAAAGTTGAATGGAAATTTCATCTCCGTGATCTTTTTTTTTAATTTAACCCTTATAATTTTAAATGCTTGAATTAGTCCTAAACTATTTAAAATTTTTTATCAAACTATAAAGATTAAATTCTAACTTTAAAACTATGACTAACAAACTCCGTTCTCACATCTAACGATCAGAGTGCATATGAGATGAACTTACATCTAACGAATCAGAGTGCATATGAGATAAACTTGGCTTGAAATTAGAACATGGAGCAAAAAAACAAACAGACAAACAAAATTTGGTCTAATGAGATAAACTTGACAAATCACAAAACCGTATGCTGTTCTCACATCTAGATTCTGATTTTGAGTATTATATCAAAAGAAGATGTAATAGGGAGTGTTCAGACGATCTATCTATATTGAATCATGTCCTATGAAAAGCCAGGAAACAGAAATTAGAACATCTGGGAAAAAGATGGGATACGGAAAGATTCTGTTACAGCTCAGATAG

mRNA sequence

ATGCACCTAATTCAGAACATTCTACAAGTCGTTCTGTTTCAAGCCAACTTATCATCCATCGACGTTGCAAATTCGCAGCCAGTTGCTCATACTGTGGTCGAAGCTACTTTGTTGCCGTATGCAAACGCATACTTGAACGGGTTGCAACTGCTCACTGTCCATGGCTTCACGTTTCCAAATACCGATGGAGTGTTCAGACGATCTATCTATATTGAATCATGTCCTATGAAAAGCCAGGAAACAGAAATTAGAACATCTGGGAAAAAGATGGGATACGGAAAGATTCTGTTACAGCTCAGATAG

Coding sequence (CDS)

ATGCACCTAATTCAGAACATTCTACAAGTCGTTCTGTTTCAAGCCAACTTATCATCCATCGACGTTGCAAATTCGCAGCCAGTTGCTCATACTGTGGTCGAAGCTACTTTGTTGCCGTATGCAAACGCATACTTGAACGGGTTGCAACTGCTCACTGTCCATGGCTTCACGTTTCCAAATACCGATGGAGTGTTCAGACGATCTATCTATATTGAATCATGTCCTATGAAAAGCCAGGAAACAGAAATTAGAACATCTGGGAAAAAGATGGGATACGGAAAGATTCTGTTACAGCTCAGATAG

Protein sequence

MHLIQNILQVVLFQANLSSIDVANSQPVAHTVVEATLLPYANAYLNGLQLLTVHGFTFPNTDGVFRRSIYIESCPMKSQETEIRTSGKKMGYGKILLQLR
Homology
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BLAST of CmoCh02G002100 vs. NCBI nr
Match: KAG6604893.1 (hypothetical protein SDJN03_02210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 2   HLIQNILQVVLFQANLSSIDVANSQPVAHTVVEATL 38
           HLIQNILQVVLFQANLSSIDVAN QPVAH V +  L
Sbjct: 114 HLIQNILQVVLFQANLSSIDVANLQPVAHAVCKRIL 149

The following BLAST results are available for this feature:
BLAST of CmoCh02G002100 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G002100 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G002100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604893.11.4e-0483.33hypothetical protein SDJN03_02210, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh02G002100 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G002100.1CmoCh02G002100.1mRNA