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CmoCh02G002090 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTACGAAATCACCCCTTTCCAAGGAATTATTCCCATAGTAGAAACCTCTTAGACTGGAAGTAGGGTTTTAGCGTTAACCCTCGCCGGCAACGAAGCAAGACTCGAGTTCTTTCAGAATCTATCATTTCTTCTGAGTAACAATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTGACTAACGTTTTTGCGTCCATGAAAAGCGCGAAAAGATTCCGAGTCAATCGCTGTTTGAGTTTTTTTCTTTTCCTTCTCTTTCTCCAATTGGAGAAATGTTTCAATAATATGTATGGTGATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAATTTAGTTCTCAACTTTCTTGATCTGTCATGAGCTAGGTCGATATAGGAAAGGACTATATAATAATTTTGTACAGCTTGTAAGTGATAATTTACTGGAATTTCAGCTTAATAATTATTCTCAAGAATCAAGAAAGGAAGTTGTAGTTCGAGTGGGGGTACTGATCAATTATATTTAGAAGTACTGATATCTGTATTACAGTTTAGTGGATACATTAGCCCCCATTAACCGCATGCTTCTGGAGGAAGAAAGATCCATGCTACCATTCTTTGATTAAATTTGCTAACGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCCTATGGGTTAAATTTAGTGCCAATACGGGTTATCATGCCAAGTAGCTTGTAATTGTTCATAAGAATTTCCTGCGTACATAAAGTTGGATCTGTTAACTCTAGTGATATGATATCTCTTCATGAGCATTTCTTACTATTAACTTGTAAACATAGATTCTTTATCCCACTCCGTAATTATCTTGATTTCATGTTTTGAAAGCAGAAGTGGATCTTCTTCTAGGTTGTCTAACTAGTGGATTTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCCATGAACTTGTATAAAACAGATACAATTGAACGGAATTATATAATAACATGCATGCATAATAAGTTGATCATTTTTTCCTCCTAGTGGACAGTTTATTACATCAAGTGGCTATCTCAAATTAAGATGCAAACAAGCTTAACAGACAATAATGTTTCGTTCTCTCTTTTCTTCGCCCTTCCTGTCCCGTACTTGGATCAGATTTAAGACCTAAACCTTCTCTTTGTAGTTTTTTATTCTTACTAGAATAGGTCACTTATGAGAAAACCTTCCATTCTTTATTCAAATTGTTAATTAAAAACCTACATTCCCCTGTTTTATATGTAGGCAAAGACAAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTCTTGAGTTGTTTTCTGAGTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAATAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAGACTGTGGTATTCTATTCAGTTCTTTGTATTTGTAGATTGTTGTCTTTTGAAGTGTTATGGATTATTTATACAATTTAATTCTGCAACTATATGGGGTTACAGATTACTAGATCCTTGCCGAATAAATTTTGCTTCTAAATAGCTTATTGTTTGCTGTTTTGCAAAATTTACTTTGATCTCAAGTATTTGGTGCACTACTTCATATAGATGGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCATGGAAATCAGAGTGAAACCAGGGATATAAAGAAGAACATAGGCTAGACTTTATTAGTAACAAGTAAATCCTTTGCTTTGGACATAAAAAAGTATCAACATTTTGGGGG TTACGAAATCACCCCTTTCCAAGGAATTATTCCCATAGTAGAAACCTCTTAGACTGGAAGTAGGGTTTTAGCGTTAACCCTCGCCGGCAACGAAGCAAGACTCGAGTTCTTTCAGAATCTATCATTTCTTCTGAGTAACAATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGCAAAGACAAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTCTTGAGTTGTTTTCTGAGTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAATAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAGACTGTGGTATTCTATTCAGTTCTTTGTATTTGTAGATTGTTGTCTTTTGAAGTGTTATGGATTATTTATACAATTTAATTCTGCAACTATATGGGGTTACAGATTACTAGATCCTTGCCGAATAAATTTTGCTTCTAAATAGCTTATTGTTTGCTGTTTTGCAAAATTTACTTTGATCTCAAGTATTTGGTGCACTACTTCATATAGATGGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCATGGAAATCAGAGTGAAACCAGGGATATAAAGAAGAACATAGGCTAGACTTTATTAGTAACAAGTAAATCCTTTGCTTTGGACATAAAAAAGTATCAACATTTTGGGGG ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTAGCTAG MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPFHSASSAALMISMLSISRRSCGWLPEGS Homology
BLAST of CmoCh02G002090 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 2.9e-07 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1G5L1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1CIN8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 3.8e-34 Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of CmoCh02G002090 vs. NCBI nr
Match: KAG7026975.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39 Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_023534316.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_022947068.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023534318.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_022971141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11 Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11 Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11 Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11 Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 9.9e-11 Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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