CmoCh02G002090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G002090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
LocationCmo_Chr02: 979371 .. 981474 (+)
RNA-Seq ExpressionCmoCh02G002090
SyntenyCmoCh02G002090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACGAAATCACCCCTTTCCAAGGAATTATTCCCATAGTAGAAACCTCTTAGACTGGAAGTAGGGTTTTAGCGTTAACCCTCGCCGGCAACGAAGCAAGACTCGAGTTCTTTCAGAATCTATCATTTCTTCTGAGTAACAATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTGACTAACGTTTTTGCGTCCATGAAAAGCGCGAAAAGATTCCGAGTCAATCGCTGTTTGAGTTTTTTTCTTTTCCTTCTCTTTCTCCAATTGGAGAAATGTTTCAATAATATGTATGGTGATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAATTTAGTTCTCAACTTTCTTGATCTGTCATGAGCTAGGTCGATATAGGAAAGGACTATATAATAATTTTGTACAGCTTGTAAGTGATAATTTACTGGAATTTCAGCTTAATAATTATTCTCAAGAATCAAGAAAGGAAGTTGTAGTTCGAGTGGGGGTACTGATCAATTATATTTAGAAGTACTGATATCTGTATTACAGTTTAGTGGATACATTAGCCCCCATTAACCGCATGCTTCTGGAGGAAGAAAGATCCATGCTACCATTCTTTGATTAAATTTGCTAACGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCCTATGGGTTAAATTTAGTGCCAATACGGGTTATCATGCCAAGTAGCTTGTAATTGTTCATAAGAATTTCCTGCGTACATAAAGTTGGATCTGTTAACTCTAGTGATATGATATCTCTTCATGAGCATTTCTTACTATTAACTTGTAAACATAGATTCTTTATCCCACTCCGTAATTATCTTGATTTCATGTTTTGAAAGCAGAAGTGGATCTTCTTCTAGGTTGTCTAACTAGTGGATTTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCCATGAACTTGTATAAAACAGATACAATTGAACGGAATTATATAATAACATGCATGCATAATAAGTTGATCATTTTTTCCTCCTAGTGGACAGTTTATTACATCAAGTGGCTATCTCAAATTAAGATGCAAACAAGCTTAACAGACAATAATGTTTCGTTCTCTCTTTTCTTCGCCCTTCCTGTCCCGTACTTGGATCAGATTTAAGACCTAAACCTTCTCTTTGTAGTTTTTTATTCTTACTAGAATAGGTCACTTATGAGAAAACCTTCCATTCTTTATTCAAATTGTTAATTAAAAACCTACATTCCCCTGTTTTATATGTAGGCAAAGACAAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTCTTGAGTTGTTTTCTGAGTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAATAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAGACTGTGGTATTCTATTCAGTTCTTTGTATTTGTAGATTGTTGTCTTTTGAAGTGTTATGGATTATTTATACAATTTAATTCTGCAACTATATGGGGTTACAGATTACTAGATCCTTGCCGAATAAATTTTGCTTCTAAATAGCTTATTGTTTGCTGTTTTGCAAAATTTACTTTGATCTCAAGTATTTGGTGCACTACTTCATATAGATGGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCATGGAAATCAGAGTGAAACCAGGGATATAAAGAAGAACATAGGCTAGACTTTATTAGTAACAAGTAAATCCTTTGCTTTGGACATAAAAAAGTATCAACATTTTGGGGG

mRNA sequence

TTACGAAATCACCCCTTTCCAAGGAATTATTCCCATAGTAGAAACCTCTTAGACTGGAAGTAGGGTTTTAGCGTTAACCCTCGCCGGCAACGAAGCAAGACTCGAGTTCTTTCAGAATCTATCATTTCTTCTGAGTAACAATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGCAAAGACAAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTCTTGAGTTGTTTTCTGAGTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAATAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAGACTGTGGTATTCTATTCAGTTCTTTGTATTTGTAGATTGTTGTCTTTTGAAGTGTTATGGATTATTTATACAATTTAATTCTGCAACTATATGGGGTTACAGATTACTAGATCCTTGCCGAATAAATTTTGCTTCTAAATAGCTTATTGTTTGCTGTTTTGCAAAATTTACTTTGATCTCAAGTATTTGGTGCACTACTTCATATAGATGGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCATGGAAATCAGAGTGAAACCAGGGATATAAAGAAGAACATAGGCTAGACTTTATTAGTAACAAGTAAATCCTTTGCTTTGGACATAAAAAAGTATCAACATTTTGGGGG

Coding sequence (CDS)

ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCGGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTAGCTAG

Protein sequence

MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPFHSASSAALMISMLSISRRSCGWLPEGS
Homology
[Close]
BLAST of CmoCh02G002090 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-07
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 5  GARSVFRSLSGSARRAAAHIGSQARSSSGSP--FRMATNKPLSHRTFRCAAEMSFCLESI 64
          GARS+ R  + S+R AAA  G  A  +  +P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSAALMISMLSISRRSCGWLPE 91
          +P+HSA+++ALM S LSIS ++ GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1G5L1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match: A0A6J1CIN8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.8e-34
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MAS+GARSVFRS SGSARRAAAHIGS+AR+SS SPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASS-SPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          S+MPFHSASS+ALM SMLSISR SCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSISRNSCGWLPEG 90

[Close]
BLAST of CmoCh02G002090 vs. NCBI nr
Match: KAG7026975.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGS 93
          SIMPFHSASSAALMISMLSISRRSCGWLPEG+
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGA 92

[Close]
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_023534316.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_022947068.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023534318.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAALMISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. NCBI nr
Match: XP_022971141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 92
          SIMPFHSASSAA+MISMLSISRRSCGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0 

Query: 6  ARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPF 65
          ARSVFRS  G A  AA        SS+ S F++    PLSHR FR   E+S C+E+++P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSAALMISMLSISRRSCGWLPEGS 93
          H+A+++AL+ SMLS+S RS  W  +G+
Sbjct: 64 HTATASALLNSMLSVSGRSI-WTFQGT 89

[Close]
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 6  ARSVFRSLSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMISMLSISRRSCGWLPEG 92
          +P+H+A+++AL+ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 6  ARSVFRSLSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMISMLSISRRSCGWLPEG 92
          +P+H+A+++AL+ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 6  ARSVFRSLSGSARRAAAHIGSQAR---SSSGSPFRMATNKPLSHRTFRCAAEMSFCLESI 65
          ARSVFRS +  A   A    +  +   SS+ + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMISMLSISRRSCGWLPEG 92
          +P+H+A+++AL+ SMLS+SRR  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]
BLAST of CmoCh02G002090 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 9.9e-11
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 6  ARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLESIMPF 65
          ARSVFRS  G A  AA        SS+ S F++    PLSHR FR   E+S C+E+++P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSAALMISMLSISRRS 85
          H+A+++AL+ SMLS+S RS
Sbjct: 64 HTATASALLNSMLSVSGRS 82

The following BLAST results are available for this feature:
BLAST of CmoCh02G002090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ32.9e-0742.05Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of CmoCh02G002090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G5E81.8e-39100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1G5L11.8e-39100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I1551.1e-3897.80protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I2H51.1e-3897.80protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1CIN83.8e-3490.11protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
BLAST of CmoCh02G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026975.13.6e-3998.91Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyr... [more]
XP_023534316.13.6e-39100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022947067.13.6e-39100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022947068.13.6e-39100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_022971141.12.3e-3897.80protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of CmoCh02G002090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33847.24.4e-1145.98unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT1G28395.27.6e-1142.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.17.6e-1142.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.37.6e-1142.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G33847.19.9e-1148.10unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..91
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G002090.1CmoCh02G002090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy