CmoCh02G000560 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G000560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein RALF-like 17
LocationCmo_Chr02: 293883 .. 294158 (-)
RNA-Seq ExpressionCmoCh02G000560
SyntenyCmoCh02G000560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTCCAGACGCCTGGCCCTTTTTTCCCTCGGAACGATCCTTCTCTGCTTCTTGATCACCAGAGCCGCCGTAGCCGACTCCGACCACGGCCACAACGTTCACGTCGTCAGGTACTCCTCCGCCGCCACCGACGAGAGCGAAAAAGCTCACCAATGCAGACAAGAAAACGACGACGTTGACGACGATTTCGATGACACATACAAGATCGTGAACAACATCGCCATAACCCTATCGGCATCCGGCAGAATACTTAAGGAGGGGGCGGCGTAA

mRNA sequence

ATGGCTGTTTCCAGACGCCTGGCCCTTTTTTCCCTCGGAACGATCCTTCTCTGCTTCTTGATCACCAGAGCCGCCGTAGCCGACTCCGACCACGGCCACAACGTTCACGTCGTCAGGTACTCCTCCGCCGCCACCGACGAGAGCGAAAAAGCTCACCAATGCAGACAAGAAAACGACGACGTTGACGACGATTTCGATGACACATACAAGATCGTGAACAACATCGCCATAACCCTATCGGCATCCGGCAGAATACTTAAGGAGGGGGCGGCGTAA

Coding sequence (CDS)

ATGGCTGTTTCCAGACGCCTGGCCCTTTTTTCCCTCGGAACGATCCTTCTCTGCTTCTTGATCACCAGAGCCGCCGTAGCCGACTCCGACCACGGCCACAACGTTCACGTCGTCAGGTACTCCTCCGCCGCCACCGACGAGAGCGAAAAAGCTCACCAATGCAGACAAGAAAACGACGACGTTGACGACGATTTCGATGACACATACAAGATCGTGAACAACATCGCCATAACCCTATCGGCATCCGGCAGAATACTTAAGGAGGGGGCGGCGTAA

Protein sequence

MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATDESEKAHQCRQENDDVDDDFDDTYKIVNNIAITLSASGRILKEGAA
Homology
BLAST of CmoCh02G000560 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-17
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 1  MAVSRRLAL-FSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATD----ESEKAHQCR 60
          MA+SRRLAL  SLGTIL  FL TR + A SD+G+++H VR+ S   D      +K  QCR
Sbjct: 1  MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61 QEND-DVDDDFDDTYKIVNNIAITLSASGRILKEGA 91
          ++ND   DDDFDDTYKIVNNIAITLSASG IL+  A
Sbjct: 61 EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDA 96

BLAST of CmoCh02G000560 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 1  MAVSRRLAL-FSLGTILLCFL-ITRAAVADSDHGHNVHVVRYSS----AATDESEKAHQC 60
          MA+SRRL L  +LGTIL CFL I  +A A  D+G ++H V++ S       +  +K  QC
Sbjct: 1  MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61 RQEND-DVDDDFDDTYKIVNNIAITLSASGRILKE 89
          R+END   DDDFDDTYKIVNNIA+TLSASGRIL++
Sbjct: 61 REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQ 95

BLAST of CmoCh02G000560 vs. ExPASy TrEMBL
Match: A0A2N9FLD3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.3e-09
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MAVSRRLALFSLGTILLCFLITRAAVAD-SDHGHNVHVVRYSSAATD--ESEKAHQCRQE 60
          MA+SR + LF LGT+L+C L+ + + AD SDH   +HV+++     D        QCR +
Sbjct: 1  MAISRSVLLFGLGTLLVCLLLIKVSEADESDHYAPIHVIKHDGIHCDGAHPNNGDQCRND 60

Query: 61 NDD---VDDDFDDTYKIVNNIAITLSAS 83
          +DD   VDDD DDTYK+VN ++++ SAS
Sbjct: 61 DDDNEEVDDDVDDTYKVVNKMSVSFSAS 88

BLAST of CmoCh02G000560 vs. ExPASy TrEMBL
Match: A0A2P5B771 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_330420 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MAVSRRLALF-SLGTILLCFL-ITRAAVADSDHGHNVHVVRYSSAATD---ESEKAHQCR 60
          MAVSR   +F  LGT+L+  L    AA AD  H   +H VR+          SEK  QC+
Sbjct: 1  MAVSRGTVMFCCLGTLLVILLFFISAAEADDHHSSEIHAVRHGGGGCKGGLNSEKGDQCQ 60

Query: 61 ----QENDDVDDDFDDTYKIVNNIAITLSASGRI 86
               ++DD+DDD DDTYKIVNN+ ++LS++G++
Sbjct: 61 DNDDDDDDDLDDDVDDTYKIVNNVKVSLSSTGKL 94

BLAST of CmoCh02G000560 vs. ExPASy TrEMBL
Match: A0A2P5BI74 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_236950 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 1  MAVSRRLALF-SLGTILLCFL-ITRAAVADSDHGHNVHVVRYSSAATD---ESEKAHQCR 60
          MAVSR   +F  LGT+L+  L    AA AD      +H VR+          SEK  QC+
Sbjct: 1  MAVSRGTVMFCCLGTLLVILLFFISAAEADDHQSSEIHAVRHGGGGCKGGLNSEKGDQCQ 60

Query: 61 ----QENDDVDDDFDDTYKIVNNIAITLSASGRI 86
               ++DD+DDD DDTYKIVNN+ ++LS++G++
Sbjct: 61 DNDDDDDDDLDDDVDDTYKIVNNVKVSLSSTGKL 94

BLAST of CmoCh02G000560 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 4.2e-40
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATDESEKAHQCRQENDD 60
          MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATDESEKAHQCRQENDD
Sbjct: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATDESEKAHQCRQENDD 60

Query: 61 VDDDFDDTYKIVNNIAITLSASGRILKEGAA 92
          VDDDFDDTYKIVNNIAITLSASGRILKEGAA
Sbjct: 61 VDDDFDDTYKIVNNIAITLSASGRILKEGAA 91

BLAST of CmoCh02G000560 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 8.3e-20
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 0

Query: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAA----TDESEKAHQCRQ 60
          MAVSRRLAL SLGTILLC L TRAA+A+SD+G ++H VR+SS +     ++  K  QCR+
Sbjct: 1  MAVSRRLALLSLGTILLCLLFTRAAIAESDYGDDIHTVRHSSDSDNCNREQPYKGDQCRE 60

Query: 61 ENDDV-DDDFDDTYKIVNNIAITLSASGRILKE 89
          END V D+DFDDTYKIVNN+AI LSASG  L+E
Sbjct: 61 ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLRE 93

BLAST of CmoCh02G000560 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 1  MAVSRRLAL-FSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATD----ESEKAHQCR 60
          MA+SRRLAL  SLGTIL  FL TR + A SD+G+++H VR+ S   D      +K  QCR
Sbjct: 1  MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61 QEND-DVDDDFDDTYKIVNNIAITLSASGRILKEGA 91
          ++ND   DDDFDDTYKIVNNIAITLSASG IL+  A
Sbjct: 61 EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDA 96

BLAST of CmoCh02G000560 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 8.9e-14
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 1  MAVSRRLAL-FSLGTILLCFL-ITRAAVADSDHGHNVHVVRYSS----AATDESEKAHQC 60
          MA+SRRL L  +LGTIL CFL I  +A A  D+G ++H V++ S       +  +K  QC
Sbjct: 1  MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61 RQEND-DVDDDFDDTYKIVNNIAITLSASGRILKE 89
          R+END   DDDFDDTYKIVNNIA+TLSASGRIL++
Sbjct: 61 REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQ 95

BLAST of CmoCh02G000560 vs. NCBI nr
Match: PON44611.1 (hypothetical protein TorRG33x02_330420 [Trema orientale])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MAVSRRLALF-SLGTILLCFL-ITRAAVADSDHGHNVHVVRYSSAATD---ESEKAHQCR 60
          MAVSR   +F  LGT+L+  L    AA AD  H   +H VR+          SEK  QC+
Sbjct: 1  MAVSRGTVMFCCLGTLLVILLFFISAAEADDHHSSEIHAVRHGGGGCKGGLNSEKGDQCQ 60

Query: 61 ----QENDDVDDDFDDTYKIVNNIAITLSASGRI 86
               ++DD+DDD DDTYKIVNN+ ++LS++G++
Sbjct: 61 DNDDDDDDDLDDDVDDTYKIVNNVKVSLSSTGKL 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVV29.3e-1760.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGZ44.3e-1456.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1[more]
A0A2N9FLD39.3e-0944.32Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1[more]
A0A2P5B7712.3e-0743.62Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_330420 PE=4 SV... [more]
A0A2P5BI741.9e-0642.55Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_236950 PE... [more]
Match NameE-valueIdentityDescription
KAG6604744.14.2e-40100.00hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6570557.18.3e-2064.52hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054503.11.9e-1660.42hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453... [more]
KAE8646929.18.9e-1456.84hypothetical protein Csa_021071 [Cucumis sativus][more]
PON44611.14.7e-0743.62hypothetical protein TorRG33x02_330420 [Trema orientale][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G000560.1CmoCh02G000560.1mRNA