CmoCh02G000460 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G000460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S5/Elongation factor G/III/V family protein
LocationCmo_Chr02: 240978 .. 241946 (-)
RNA-Seq ExpressionCmoCh02G000460
SyntenyCmoCh02G000460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAAAAAAAAACATTTTAAGGAGGGTTAGTTTTACGAAAAGAAATGGAATTTCCTCGCTCGTGCTCTGCTTTTGTGGAGGCTCAAGGAATATTCTTTTCCATTGCTCTCCTTTCATCGTCTCCCAGGTTCTTCTTTCTTGTAAGCATTCTTTGTCTGCTGAATTTGTTTATGTTCTTCCACTACCGCTTTCTTCTAGGTTCTGTCCTTGCTAAATCCGTTTTCTCAATCGTTTGTGTTTGATAAATTATTTCGAGATCTGGTTTGGATGTTTCTAGTTTCCGATGGATTAAACAATTGGAAGAATCATCGTGAAGCGTAATTAAAGTAATCTCGTTTAAGTTATGATTATCTGTTATGTTTAAACAATGCGATTTAAGCTAACGAGTGAGCTGCGCTATATTTTAAGTTAGTGAGATTTAAGCTAGTTACAGATACCCGCAAGAGAACGGGATTGAAGGAGCAAATGATCCCATTTTCTGAATTCGAGGACAAGCTGTAAGTCTCTTTCAAAGTTAATTGTATAGAAGCGCTTATAAATTTGGTTCTGATTCAGTTGTCTGCTCTGGCTTATGGAATTGCAGCATGCATGTTATGATATTTGTTCTGTGTATCATTTTTTTTTTTTTTTTTTCCTTAGAATGATTTGTAAGGAGTGCTCAAACTTTTTGTTCTTGATCTGTTTTTCTTGTTTGGTTGAGAGCATTGTTAGCCGCTTTAACTGGTTTCTTCGTATCATGTCTGCTTCCTTATTCAAATCGAATTTGCAGGAAAAAGAGTATAGGATTTAGTTGTCTCAATCGATTGCCAGGAATTTATAAGAACATTATTCTTTGGTAGAAACTCTTTTCTTCACAGCTATTGTCCACAGGAAAAATATATATATATATAGAAACACCCTTCAAATTTTTTCCTTCTTGTGCAGAATACATAAAATACAAGTATGCAACATGAAATCGTACTGCTAG

mRNA sequence

AAAGAAAAAAAAAACATTTTAAGGAGGGTTAGTTTTACGAAAAGAAATGGAATTTCCTCGCTCGTGCTCTGCTTTTGTGGAGGCTCAAGGAATATTCTTTTCCATTGCTCTCCTTTCATCGTCTCCCAGGTTCTTCTTTCTTTTAGTGAGATTTAAGCTAGTTACAGATACCCGCAAGAGAACGGGATTGAAGGAGCAAATGATCCCATTTTCTGAATTCGAGGACAAGCTAATACATAAAATACAAGTATGCAACATGAAATCGTACTGCTAG

Coding sequence (CDS)

ATGGAATTTCCTCGCTCGTGCTCTGCTTTTGTGGAGGCTCAAGGAATATTCTTTTCCATTGCTCTCCTTTCATCGTCTCCCAGGTTCTTCTTTCTTTTAGTGAGATTTAAGCTAGTTACAGATACCCGCAAGAGAACGGGATTGAAGGAGCAAATGATCCCATTTTCTGAATTCGAGGACAAGCTAATACATAAAATACAAGTATGCAACATGAAATCGTACTGCTAG

Protein sequence

MEFPRSCSAFVEAQGIFFSIALLSSSPRFFFLLVRFKLVTDTRKRTGLKEQMIPFSEFEDKLIHKIQVCNMKSYC
Homology
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BLAST of CmoCh02G000460 vs. TAIR 10
Match: AT1G56070.1 (Ribosomal protein S5/Elongation factor G/III/V family protein )

HSP 1 Score: 40.0 bits (92), Expect = 9.6e-04
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 0 

Query: 38  LVTDTRKRTGLKEQMIPFSEFEDKL 63
           LV D RKR GLKE M P SEFEDKL
Sbjct: 819 LVADIRKRKGLKEAMTPLSEFEDKL 843

The following BLAST results are available for this feature:
BLAST of CmoCh02G000460 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000460 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000460 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G56070.19.6e-0476.00Ribosomal protein S5/Elongation factor G/III/V family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G000460.1CmoCh02G000460.1mRNA