CmoCh01G020780 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G020780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionHigh mobility group B protein 2
LocationCmo_Chr01: 14466836 .. 14469532 (+)
RNA-Seq ExpressionCmoCh01G020780
SyntenyCmoCh01G020780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGATTTCTAGGCACGTGCGAATCGCATGACAGTATAACGTGCGTGCAAAGGAATAGAAACGCTGGAGCACGAAGGCACCGCAAATGGGCCCTTTCTATGGATATGGGCTTTTTTGTAATTTTCTGGCCCACATCATTATACTCGTTTTCACTCTGGGCTTGATTGTTTCGAGCTTCTTTTGAGGCCCAACATTGGAAAAACGGGCTTTCAGAGATGCTCTACACTTGCCCCTCGCACCGCCAACGAATATGAGCAGTAGGATCTCGATGACGTGGACCAATGGCATAAGAGTGCGCGGATTATTGAGTTGGCAATAAATGAAAAATCCCGCCGAAATTCCTGCTTGGTTTCATTTCGTGCGCAATTGAATTTCAATTTGCCCTCCTGTCCTTCAAGGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACACGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGTACGTTTCATCCATCTCCTTCGATTTCTGATGCAATTTCATGTGCTTTCTTTCTTTCATCTCCAAATTGTTGCTGATCTGATCTTATTCCTGCAGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGTGAGTTTTTATTGTCCCTTCCATGTTATTTTCTGTCTGATGTGTTTGTTTTCCACTTTTAATCGGTTCATATCACCAGTGTTAAAGTAGGCGTTAACCCTTTTTGTTCTGATCGATCGTTTTTGCTTATTTGTTCATTTGCTGTAGGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGTAATTTTTTTTTTATAAGATGGCTGAATTACTCGCTTATCTACAAATTATTTCATTTATACGGCTGTGGAGTTGAGTAATATGCGAGCTTGGATGGAAAAACTAGGAACTTGTTTATGGTTTGTGACAAAATATATATTCAAAATCATTATAATTACCTTGTGGATATATTAGCGAGTGTCAAAACACCCGACTTTCAACGAAAAGATTCCTCTGATTTGTGTATTTTACTTTAGCAGTGTTTTTGTTCCTGTAAGTCGATTATGTTTCTTATCTCTATGCTGTCGTGTTGTTGTTGTCGTCGTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTACAATTAAAGGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTAAGTTATTTCCCGTTGTACTTTTTGTTATTTGTCTCCATTCAACTTTTGCAATTCATTCTATGGTAATGTGTGTTGACAATTGACTTGCAAATGGTTCGATCAGGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGTACGTGATTGCCATCGTAGTGTTTCTTAACTTCACCTGGTATTATGAACTATGTCTGAATTGCTGTTTATAATATCAGGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGTATTAATATCCTCTTGGAAAAGTTTCTGAAGCATTCATATTGCAGCTGTATATTACTGTGTGAATTCAATTTTCACTCCCATGTGAGTTCAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGTAGTTTGTTTAAGGATTGCTGTAAAAGTAGACGTTTTGATGTGGATGTTTGTTTGAGATTACCATTCCTTTCATTTGATATTGCAGGAGGAGGATGAGGAGTGACGAAGATGTAGATGATAATTAAGTCATTTAGGCTAACCTTCCAACAGTAATGGTCTGATCATTTCCTGTTAAATGTCTTTAATATCATGAAAATATATTGGTATCTCCCTGTTATTCTTTTTGTGCATTCAGGAACCACCAATGGGTTGTAATGGGAGATCATCTGTGTCCTGTACCTTACAATGTTTAGTTGTTCCAACCCCCAACTATCTTTTTTAATTTTTCAACTAAGATGGCGAGAACAGAAGATGATGAGGATGAAGATGGTACCAAACCCACGCACTAAATCTCTTCTCCTTCCTACTATGGACCAACTATTAGAGCCTGCACTCGACCTCTGAATTCGAGATATGCGACCAGAATGCTTGCTTGGTGTGTCCTGTTAATTTTTGTTTGTTTCTTTTAAATGTTCATCCTTCATTACTGAATCAAGCCAACACTCAAGGTGTTCTTTCATTCTTTCAATGTAATTCAAGAAATGGTTGATCTGATGGATAATTCGTTATAAATGTTGGAAAGCGAAAAGAAGATCCACCAACATTATTAATGAAGGAAATTTGATAATGCTCCCCCTTTAAATAATATGTCCA

mRNA sequence

ATGCAGGGATTTCTAGGCACGTGCGAATCGCATGACAGTATAACGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACACGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGAGGAGGATGAGGAGTGACGAAGATGTAGATGATAATTAAGTCATTTAGGCTAACCTTCCAACAGTAATGGAACCACCAATGGGTTGTAATGGGAGATCATCTGTGTCCTGTACCTTACAATGTTTAGTTGTTCCAACCCCCAACTATCTTTTTTAATTTTTCAACTAAGATGGCGAGAACAGAAGATGATGAGGATGAAGATGGTACCAAACCCACGCACTAAATCTCTTCTCCTTCCTACTATGGACCAACTATTAGAGCCTGCACTCGACCTCTGAATTCGAGATATGCGACCAGAATGCTTGCTTGGTGTGTCCTGTTAATTTTTGTTTGTTTCTTTTAAATGTTCATCCTTCATTACTGAATCAAGCCAACACTCAAGGTGTTCTTTCATTCTTTCAATGTAATTCAAGAAATGGTTGATCTGATGGATAATTCGTTATAAATGTTGGAAAGCGAAAAGAAGATCCACCAACATTATTAATGAAGGAAATTTGATAATGCTCCCCCTTTAAATAATATGTCCA

Coding sequence (CDS)

ATGCAGGGATTTCTAGGCACGTGCGAATCGCATGACAGTATAACGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACACGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGAGGAGGATGAGGAGTGA

Protein sequence

MQGFLGTCESHDSITTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGDDEAGDDDGSEEEEDEE
Homology
[Close]
BLAST of CmoCh01G020780 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.6e-43
Identity = 109/154 (70.78%), Postives = 125/154 (81.17%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAV-KKGAAKK-----GSKKAGKDPNKPKRPASAFFVFMEEFRK 116
           MKGGKSKTES +   KLAV KKGAA K     G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 117 KFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGA 176
            F++E+P NKAVSAVGKAAG KWK+MSDAEKAPYVAK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 177 NAAEGDESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
              + +ESEKS SEVN +D+  D++GS EEED++
Sbjct: 121 TGGDEEESEKSVSEVNDEDD--DEEGSGEEEDDD 152

[Close]
BLAST of CmoCh01G020780 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 99/148 (66.89%), Postives = 117/148 (79.05%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEEEEDDD 141

[Close]
BLAST of CmoCh01G020780 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-37
Identity = 99/150 (66.00%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 116
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 117 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 176
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 177 GDESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
            +ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEEEDDD 144

[Close]
BLAST of CmoCh01G020780 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-36
Identity = 95/149 (63.76%), Postives = 118/149 (79.19%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAA-KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEE 116
           MKGGKSK +S     KLAVKK AA  K +KKA KDPNKPKRP SAFFVFME+FRK + E+
Sbjct: 1   MKGGKSKAKS---DNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 117 NPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEG 176
           +PNNK+V+ VGKA G KWK ++ AEKAP+++KA+KRK EYEKN++AYNKKQA+G  AAE 
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 177 DESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           +ES+KS SEVN DDE  D  G ++ ED++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSEDDD 144

[Close]
BLAST of CmoCh01G020780 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVK-KGAAK--KGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 116
           MKG KSK  + K  AKLAVK KGA K  KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 117 SEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANA 176
            E+NP NK+V+AVGKAAG +WKS+S+++KAPYVAKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 177 A--------EGDESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           A        + +ES+KS SEVN +D   D++GSEE+ED++
Sbjct: 121 APAKEEEEEDEEESDKSKSEVNDED---DEEGSEEDEDDD 156

[Close]
BLAST of CmoCh01G020780 vs. ExPASy TrEMBL
Match: A0A6J1FJX2 (HMG1/2-like protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.9e-68
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ESEKSTSEVNGDDEAGDDDGSEEEEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 148

[Close]
BLAST of CmoCh01G020780 vs. ExPASy TrEMBL
Match: A0A6J1IV01 (HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.8e-67
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ESEKSTSEVNGDDEAGDDDGSEEEE+E+
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEEED 148

[Close]
BLAST of CmoCh01G020780 vs. ExPASy TrEMBL
Match: A0A6J1J327 (HMG1/2-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDE 204
           ESEKSTSEVNGDDEAGDDDGSEEE++E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEDEE 147

[Close]
BLAST of CmoCh01G020780 vs. ExPASy TrEMBL
Match: A0A6J1FL59 (HMG1/2-like protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDE 204
           ESEKSTSEVNGDDEAGDDDGSEEE++E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEDEE 147

[Close]
BLAST of CmoCh01G020780 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 9.5e-54
Identity = 131/149 (87.92%), Postives = 138/149 (92.62%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAA-KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEE 116
           MKGGKSK+ES K   KLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKF+EE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 117 NPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEG 176
           NPNNKAVSAVGKAAG KWKSMSDAEKAPY+AKADKRKVEYEKNMKAYNKKQASGANAA+ 
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 177 DESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           DESEKS SEVN DDE G D+GSEEE+D+E
Sbjct: 121 DESEKSMSEVN-DDEDG-DEGSEEEDDDE 147

[Close]
BLAST of CmoCh01G020780 vs. NCBI nr
Match: KAG6608639.1 (hypothetical protein SDJN03_01981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.4 bits (890), Expect = 8.2e-92
Identity = 195/204 (95.59%), Postives = 195/204 (95.59%), Query Frame = 0 

Query: 1   MQGFLGTCESHDSITTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGG 60
           MQGFLG        TTELSLSSSPRTASLLLSH QLRFILPIQTLHLTQPPSIGFDMKGG
Sbjct: 1   MQGFLG--------TTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGG 60

Query: 61  KSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNK 120
           KSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNK
Sbjct: 61  KSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNK 120

Query: 121 AVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEK 180
           AVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEK
Sbjct: 121 AVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEK 180

Query: 181 STSEVNGDDEAGDDDGSEEEEDEE 205
           STSEVNGDDEAGDDDGSEEEEDEE
Sbjct: 181 STSEVNGDDEAGDDDGSEEEEDEE 196

[Close]
BLAST of CmoCh01G020780 vs. NCBI nr
Match: KAG7037955.1 (hypothetical protein SDJN02_01588, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.8 bits (878), Expect = 2.0e-90
Identity = 196/211 (92.89%), Postives = 196/211 (92.89%), Query Frame = 0 

Query: 1   MQGFLGTCESHDSITTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGG 60
           MQGFLG        TTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGG
Sbjct: 1   MQGFLG--------TTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGG 60

Query: 61  KSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNK 120
           KSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNK
Sbjct: 61  KSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNK 120

Query: 121 AVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEK 180
           AVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEK
Sbjct: 121 AVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEK 180

Query: 181 STSEVNGDDEAGDDDGSEE-------EEDEE 205
           STSEVNGDDEAGDDDGSEE       EEDEE
Sbjct: 181 STSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 203

[Close]
BLAST of CmoCh01G020780 vs. NCBI nr
Match: XP_022940991.1 (HMG1/2-like protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.8e-67
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ESEKSTSEVNGDDEAGDDDGSEEEEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 148

[Close]
BLAST of CmoCh01G020780 vs. NCBI nr
Match: XP_022981797.1 (HMG1/2-like protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-66
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ESEKSTSEVNGDDEAGDDDGSEEEE+E+
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEEED 148

[Close]
BLAST of CmoCh01G020780 vs. NCBI nr
Match: XP_023522357.1 (HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-66
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           PNNKAVSAVGKAAGHKWKSMSDAEKAPY AKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYAAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ESEKST EVNGDDEAGDDDGSEEEEDEE
Sbjct: 121 ESEKSTPEVNGDDEAGDDDGSEEEEDEE 148

[Close]
BLAST of CmoCh01G020780 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 99/148 (66.89%), Postives = 117/148 (79.05%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
           ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEEEEDDD 141

[Close]
BLAST of CmoCh01G020780 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-38
Identity = 99/150 (66.00%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 116
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 117 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 176
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 177 GDESEKSTSEVNGDDEAGDDDGSEEEEDEE 205
            +ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEEEDDD 144

[Close]
BLAST of CmoCh01G020780 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 154.8 bits (390), Expect = 7.2e-38
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 116
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 117 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 176
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 177 GDESEKSTSEVNGDDEAGDDDGSEEEEDE 204
            +ES+KS SEVN +D+A  +DGSEEE+D+
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEEDDD 143

[Close]
BLAST of CmoCh01G020780 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 154.5 bits (389), Expect = 9.5e-38
Identity = 96/143 (67.13%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 116
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 117 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 176
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 177 ESEKSTSEVNGDDEAGDDDGSEE 200
           ES+KS SEVN +D+A  +DGSEE
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEE 136

[Close]
BLAST of CmoCh01G020780 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-37
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 0 

Query: 57  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 116
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 117 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 176
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 177 GDESEKSTSEVNGDDEAGDDDGSEEEED 203
            +ES+KS SEVN +D+A  +DGSEE++D
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEDDD 142

The following BLAST results are available for this feature:
BLAST of CmoCh01G020780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P265855.6e-4370.78HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1[more]
P930472.1e-3766.89High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV... [more]
O495964.6e-3766.00High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV... [more]
P406196.6e-3663.76HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1[more]
P273471.3e-3160.00DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1[more]
BLAST of CmoCh01G020780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FJX28.9e-68100.00HMG1/2-like protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=... [more]
A0A6J1IV015.8e-6798.65HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ... [more]
A0A6J1J3271.3e-6698.64HMG1/2-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ... [more]
A0A6J1FL591.3e-6698.64HMG1/2-like protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=... [more]
A0A1S3BW969.5e-5487.92HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1[more]
BLAST of CmoCh01G020780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608639.18.2e-9295.59hypothetical protein SDJN03_01981, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037955.12.0e-9092.89hypothetical protein SDJN02_01588, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940991.11.8e-67100.00HMG1/2-like protein isoform X1 [Cucurbita moschata][more]
XP_022981797.11.2e-6698.65HMG1/2-like protein isoform X1 [Cucurbita maxima][more]
XP_023522357.12.0e-6698.65HMG1/2-like protein [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh01G020780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20696.11.5e-3866.89high mobility group B3 [more]
AT1G20693.13.3e-3866.00high mobility group B2 [more]
AT1G20693.37.2e-3865.77high mobility group B2 [more]
AT1G20696.39.5e-3867.13high mobility group B3 [more]
AT1G20693.21.2e-3765.54high mobility group B2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..204
NoneNo IPR availablePANTHERPTHR46261:SF22HIGH MOBILITY GROUP B PROTEIN 2-RELATEDcoord: 57..202
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 94..160
e-value: 3.1005E-20
score: 78.4385
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 93..164
e-value: 3.4E-25
score: 99.7
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 94..163
e-value: 5.6E-23
score: 81.1
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 94..163
score: 20.373165
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 78..178
e-value: 7.8E-27
score: 95.5
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 80..167
IPR031061High mobility group protein HMGB, plantPANTHERPTHR46261HIGH MOBILITY GROUP B PROTEIN 4-RELATEDcoord: 57..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G020780.1CmoCh01G020780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006333 chromatin assembly or disassembly
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0030527 structural constituent of chromatin