Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATCCTTATTTTCTAGATCGAACCAACACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTCCGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCCTCATCCAACAACAACCACCACCGCCTCTTATTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGCCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGGCGAAGCTCAATTGTAATGCGTAGGCCGTCGAGCCAACGACGGAGCCGCCGCTGCTGACGATCTCCGACATGGCTTCACCTTCATTAAAACTGTGTTTTTGTGTTATTAATGAATTGGTGTGATTGGGATTAACTATTTAGTTAAGTTTGATATGTGTGTGTTAGGAACTTGGGGAATGGGTTTTCTTCATGGGTCGTTTTTTCCCACTGTATTAAACCTTCCTCTAAAATAATTATATAAAAATATTTCTTATTTCTAAGTATGATTTTTTTTTAATGGTTTGGATTATTTCATCATTAGCAATATAGCATTAAATAATAATAATAATAATAATAAATAAATAAATAAATAAACAATTAATTTTATTAGAAAAATTAATGTGATTTGTGAAATTTAAGTTAGCACAAAGAAATGTGATAATTTTTTTTTTTTTTTTTTTTTTAAGGATAAATATGTATATGAAAGGGATTATTTTGTTAGGAGCATACATGACACGTGTCCCTTCAGAGGTCGAGTAGTCTTGGGCTAGACATCTGGTTGAGGTCGAGAATGGAGTTTAGAGTTTGACATACCATCTTTATGGGGTTTTAGAAAGTTAATACAAAATTTAAAATTTAGAAGCTTATTAAATATTTTATAAATGAAAAAAATAAAAAGAAATTAAAATTGTAATTTAACGTTTGAATAAAGAACGATAGCCCCATAAACCACGCTTTGGCGCCCTAATAGGCAGCCGTACAACTACCAATTACCGCCCAATCTTAACGACTTCCCTTTCAGTAATTAAAGGGAAATTTGTGGGCCAAATTGAATTAGCTGTCAAAAAACCATTTTGCTCTCAACAGAAAGTGGGAAGGGCTGAACGCCGGCGAGGCTCTGTTGTCTTTCACCTTTGGCTCATCTCCCAGAG
mRNA sequence
ATGGCCGATCCTTATTTTCTAGATCGAACCAACACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTCCGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCCTCATCCAACAACAACCACCACCGCCTCTTATTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGCCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGGCGAAGCTCAATTAG
Coding sequence (CDS)
ATGGCCGATCCTTATTTTCTAGATCGAACCAACACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTCCGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCCTCATCCAACAACAACCACCACCGCCTCTTATTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGCCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGGCGAAGCTCAATTAG
Protein sequence
MADPYFLDRTNTSGYKPTRVSNEFHLQNAAVSGGSHGGLLQTPPRFFSVPSIHSHQLLPLIQQQPPPPLITPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAKLN
Homology
BLAST of CmoCh01G020400 vs. ExPASy TrEMBL
Match:
A0A5A7VBL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001180 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 6.9e-55
Identity = 117/166 (70.48%), Postives = 134/166 (80.72%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR++N FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSR 120
QQ PPL+ PPP LRPHR+L SQPR SHSLKKSKS +++KDS AVVDRR+PSR
Sbjct: 61 FFQQNKSPPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSAAVVDRRIPSR 120
Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
T SS AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RPAK
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAK 165
BLAST of CmoCh01G020400 vs. ExPASy TrEMBL
Match:
A0A5D3E771 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007960 PE=4 SV=1)
HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR++N FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSR 120
QQ PPL+ PPP LRPHR+L SQPR SHSLKKSKS +++KDS VVDRR+PSR
Sbjct: 61 FFQQNKSPPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSATVVDRRIPSR 120
Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
T SS AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RPAK
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAK 165
BLAST of CmoCh01G020400 vs. ExPASy TrEMBL
Match:
A0A1S3CRS4 (uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=4 SV=1)
HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR++N FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSR 120
QQ PPL+ PPP LRPHR+L SQPR SHSLKKSKS +++KDS VVDRR+PSR
Sbjct: 61 FFQQNKSPPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSATVVDRRIPSR 120
Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
T SS AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RPAK
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAK 165
BLAST of CmoCh01G020400 vs. ExPASy TrEMBL
Match:
A0A0A0LJ69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 117/168 (69.64%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR+SN FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI-----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPS 120
QQ PPL+ PPP +RPHR+L SQPR SHSLKKSKS +++KDS AVVDRR+PS
Sbjct: 61 FFQQNKSPPLLPPPPTPTQSNIRPHRSLPSQPR-SHSLKKSKSTRKEKDSAAVVDRRIPS 120
Query: 121 RTFSSP-AAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
RT SS A AKRVVRVEE +KLSGC F VISPPPSSLPLPKF +RPAK
Sbjct: 121 RTISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAK 167
BLAST of CmoCh01G020400 vs. ExPASy TrEMBL
Match:
A0A6J1CF43 (uncharacterized protein LOC111010153 OS=Momordica charantia OX=3673 GN=LOC111010153 PE=4 SV=1)
HSP 1 Score: 197.2 bits (500), Expect = 5.3e-47
Identity = 119/175 (68.00%), Postives = 133/175 (76.00%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTR---VSN---EFHLQN-AAVSGGSHGGLLQTPPRFFSVPS-I 60
MADPYFLDR +GY TR +SN ++L+N AA +G +HGGLL+TPPRFFS PS I
Sbjct: 1 MADPYFLDRPPPAGYNQTRSLPISNNNYNYNLENIAAAAGNNHGGLLRTPPRFFSAPSII 60
Query: 61 HSHQLLPLIQQQPPPPLITPPPILRPHRTLSSQPRSSHSL--KKSKSIKRDKD--SPAVV 120
H HQ P IQ QPPP + PPPILRPHR+L SQP SHSL KKSKS KR + SPAVV
Sbjct: 61 HGHQFHPFIQLQPPP--LLPPPILRPHRSLPSQPARSHSLNPKKSKSAKRSEKSFSPAVV 120
Query: 121 DRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAKLN 164
DRR SRT S+ AAAKRVV+VEE D LSGCLFA +SPPPSSLPLPKFCLRPAKLN
Sbjct: 121 DRRAASRTSSTAAAAKRVVKVEELD-LSGCLFA-LSPPPSSLPLPKFCLRPAKLN 171
BLAST of CmoCh01G020400 vs. NCBI nr
Match:
KAG6608604.1 (hypothetical protein SDJN03_01946, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037922.1 hypothetical protein SDJN02_01553, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 305.1 bits (780), Expect = 3.7e-79
Identity = 156/165 (94.55%), Postives = 158/165 (95.76%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQNAAVSGGSHGGLLQTPPRFFSVPSIHSHQLLPL 60
MADPYFLDRT+TSGYKPTRVSNEFHLQNAAV GGSHGGLLQTPPRFFSVPSIHSHQLLP
Sbjct: 1 MADPYFLDRTSTSGYKPTRVSNEFHLQNAAVYGGSHGGLLQTPPRFFSVPSIHSHQLLPF 60
Query: 61 I--QQQPPPPLITPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSRTFS 120
I QQQ PPPL+TPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDS AVVDRRVPSRTFS
Sbjct: 61 IQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSRTFS 120
Query: 121 SPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAKLN 164
SPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRP KLN
Sbjct: 121 SPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLN 165
BLAST of CmoCh01G020400 vs. NCBI nr
Match:
KAA0063295.1 (uncharacterized protein E6C27_scaffold205G001180 [Cucumis melo var. makuwa])
HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 117/166 (70.48%), Postives = 134/166 (80.72%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR++N FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSR 120
QQ PPL+ PPP LRPHR+L SQPR SHSLKKSKS +++KDS AVVDRR+PSR
Sbjct: 61 FFQQNKSPPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSAAVVDRRIPSR 120
Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
T SS AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RPAK
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAK 165
BLAST of CmoCh01G020400 vs. NCBI nr
Match:
XP_008466665.1 (PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo] >TYK31480.1 uncharacterized protein E5676_scaffold455G007960 [Cucumis melo var. makuwa])
HSP 1 Score: 221.9 bits (564), Expect = 4.1e-54
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR++N FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPSR 120
QQ PPL+ PPP LRPHR+L SQPR SHSLKKSKS +++KDS VVDRR+PSR
Sbjct: 61 FFQQNKSPPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSATVVDRRIPSR 120
Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
T SS AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RPAK
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAK 165
BLAST of CmoCh01G020400 vs. NCBI nr
Match:
KGN60046.1 (hypothetical protein Csa_001363 [Cucumis sativus])
HSP 1 Score: 217.6 bits (553), Expect = 7.8e-53
Identity = 117/168 (69.64%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTRVSNEFHLQN-AAVSGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
MADPYFLDR+ ++G+ TR+SN FHL+N AAVSG SHGGLLQTPPRF S PS H+HQ P
Sbjct: 1 MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60
Query: 61 LIQQQPPPPLITPPPI-----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSPAVVDRRVPS 120
QQ PPL+ PPP +RPHR+L SQPR SHSLKKSKS +++KDS AVVDRR+PS
Sbjct: 61 FFQQNKSPPLLPPPPTPTQSNIRPHRSLPSQPR-SHSLKKSKSTRKEKDSAAVVDRRIPS 120
Query: 121 RTFSSP-AAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAK 162
RT SS A AKRVVRVEE +KLSGC F VISPPPSSLPLPKF +RPAK
Sbjct: 121 RTISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAK 167
BLAST of CmoCh01G020400 vs. NCBI nr
Match:
XP_022139188.1 (uncharacterized protein LOC111010153 [Momordica charantia])
HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 119/175 (68.00%), Postives = 133/175 (76.00%), Query Frame = 0
Query: 1 MADPYFLDRTNTSGYKPTR---VSN---EFHLQN-AAVSGGSHGGLLQTPPRFFSVPS-I 60
MADPYFLDR +GY TR +SN ++L+N AA +G +HGGLL+TPPRFFS PS I
Sbjct: 1 MADPYFLDRPPPAGYNQTRSLPISNNNYNYNLENIAAAAGNNHGGLLRTPPRFFSAPSII 60
Query: 61 HSHQLLPLIQQQPPPPLITPPPILRPHRTLSSQPRSSHSL--KKSKSIKRDKD--SPAVV 120
H HQ P IQ QPPP + PPPILRPHR+L SQP SHSL KKSKS KR + SPAVV
Sbjct: 61 HGHQFHPFIQLQPPP--LLPPPILRPHRSLPSQPARSHSLNPKKSKSAKRSEKSFSPAVV 120
Query: 121 DRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPAKLN 164
DRR SRT S+ AAAKRVV+VEE D LSGCLFA +SPPPSSLPLPKFCLRPAKLN
Sbjct: 121 DRRAASRTSSTAAAAKRVVKVEELD-LSGCLFA-LSPPPSSLPLPKFCLRPAKLN 171
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VBL8 | 6.9e-55 | 70.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3E771 | 2.0e-54 | 69.88 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CRS4 | 2.0e-54 | 69.88 | uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=... | [more] |
A0A0A0LJ69 | 3.8e-53 | 69.64 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1 | [more] |
A0A6J1CF43 | 5.3e-47 | 68.00 | uncharacterized protein LOC111010153 OS=Momordica charantia OX=3673 GN=LOC111010... | [more] |
Match Name | E-value | Identity | Description | |
KAG6608604.1 | 3.7e-79 | 94.55 | hypothetical protein SDJN03_01946, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0063295.1 | 1.4e-54 | 70.48 | uncharacterized protein E6C27_scaffold205G001180 [Cucumis melo var. makuwa] | [more] |
XP_008466665.1 | 4.1e-54 | 69.88 | PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo] >TYK31480.1 uncha... | [more] |
KGN60046.1 | 7.8e-53 | 69.64 | hypothetical protein Csa_001363 [Cucumis sativus] | [more] |
XP_022139188.1 | 1.1e-46 | 68.00 | uncharacterized protein LOC111010153 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |