CmoCh01G020290 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G020290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	gibberellin-regulated protein 1-like
Location	Cmo_Chr01: 14246135 .. 14247088 (-)
RNA-Seq Expression	CmoCh01G020290
Synteny	CmoCh01G020290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCTCCACCACCTTTTTTCATCTATAAATATGAACCATTTCCTTTCTCATTCATATCACGTACAACAAACATTTTAACAATCCTCTGCTTCGTCTCCCATGGCCATCTCTGGTCTTTCCAAGGCTTTGGTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAGAGGTATAGCCTTGAACCAACTTCCATCCTCCTAATTTATCACAAACCTCAAATGTTCTTACGCCCAATATATATGGGTTTCGTTGCAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGGTAATATGTTAATATATTTTATATTTTATATACGTAAAAAAATAATGAAATATCGAGTGTATTAGTTATGATATACCAAATTTAATAGGTCAAAAAATTTAACATTTATTGTGCGTGATCAGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCAAATCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAAATAAAGAATTATTCAAAGTTCTCTGCATATATTATTTGTGCATGCAACGTGTCTGCTACTTAAATCGAATCAGGGTTATGTTGGAGTTTGATTAATGATTATGAGTTTCAAGCGTGTTTGAAATATGAAATTAATGTAAAATAAAGGGAATCTGTGAAAACCAGATTCTTGTGTCTCTGTCTCTTTTGTTTGTTTGGCCTATTACATGAATATAAGAGGTATGAATTATTTTGTACGTTTCTTGGACTTGGAAGAAAAGTGGGTCTGTTTTTAATTCTGTGTTAAAGCTAAAATTAATGGATCAACTGCTTTCTGAGCCGACCA

mRNA sequence

CCACTCTCCACCACCTTTTTTCATCTATAAATATGAACCATTTCCTTTCTCATTCATATCACGTACAACAAACATTTTAACAATCCTCTGCTTCGTCTCCCATGGCCATCTCTGGTCTTTCCAAGGCTTTGGTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAGAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCAAATCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAAATAAAGAATTATTCAAAGTTCTCTGCATATATTATTTGTGCATGCAACGTGTCTGCTACTTAAATCGAATCAGGGTTATGTTGGAGTTTGATTAATGATTATGAGTTTCAAGCGTGTTTGAAATATGAAATTAATGTAAAATAAAGGGAATCTGTGAAAACCAGATTCTTGTGTCTCTGTCTCTTTTGTTTGTTTGGCCTATTACATGAATATAAGAGGTATGAATTATTTTGTACGTTTCTTGGACTTGGAAGAAAAGTGGGTCTGTTTTTAATTCTGTGTTAAAGCTAAAATTAATGGATCAACTGCTTTCTGAGCCGACCA

Coding sequence (CDS)

ATGGCCATCTCTGGTCTTTCCAAGGCTTTGGTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAGAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCTTGTGCGTCCAGGTGCAAATTATCTTCAAGGCCAAATCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAA

Protein sequence

MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP

Homology

[Close]

BLAST of CmoCh01G020290 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-29
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 6   LSKALVTCVLMSLLV---VHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRP 65
           +SKAL   +L+SLL+   V  +  D+  ++    AA+  + + IDCGGACA+RC+LSSRP
Sbjct: 3   ISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAY--SYKKIDCGGACAARCRLSSRP 62

Query: 66  NLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            LC RACGTCCARCNCVPPGTSG  ETCPCYASLTTHG +RKCP
Sbjct: 63  RLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of CmoCh01G020290 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-28
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 6   LSKALVTCVLMSLLVVHLVAAD-EEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of CmoCh01G020290 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-26
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 8   KALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLCKR 67
           + L+  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRPNLC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of CmoCh01G020290 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of CmoCh01G020290 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEEVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPNLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRPNLC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of CmoCh01G020290 vs. ExPASy TrEMBL
Match: A0A6J1FJ01 (gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445908 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.9e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of CmoCh01G020290 vs. ExPASy TrEMBL
Match: A0A6J1J2A8 (gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALVTCVLMSLLVVHLV ADE+VNSIHGVAAHPAN+QSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADEKVNSIHGVAAHPANMQSIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of CmoCh01G020290 vs. ExPASy TrEMBL
Match: A0A6J1CCE1 (gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC111010205 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.2e-35
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MA S LSK L+TCV MSLLV+  V A E+VN   G  A P  IQ+IDCGGACA RCKLSS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHEKVN---GTTADPTKIQNIDCGGACAMRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPNLCKRACGTCCARC+CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of CmoCh01G020290 vs. ExPASy TrEMBL
Match: A0A0A0LDK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.7e-31
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 6   LSKALVTCVLMSLLVVHLVAADEEVNSIHGVAA-HPANIQSIDCGGACASRCKLSSRPNL 65
           L K +V  +  SLLV+  V AD+++  + GVAA  P   Q+IDCGGACASRCKLSSRPNL
Sbjct: 3   LPKIIVCLLASSLLVLCFVEADDQM--VVGVAASSPTKTQNIDCGGACASRCKLSSRPNL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCCARC+CVPPGTSG YE CPCYA+LTTHGGRRKCP
Sbjct: 63  CHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of CmoCh01G020290 vs. ExPASy TrEMBL
Match: A0A5D3E7E4 (Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008070 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 6   LSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLC 65
           + K +   V MSLLV+  V AD+    + GVAA P   Q+I+CGGACASRCKLSSRPNLC
Sbjct: 3   IPKIIPCLVAMSLLVLCFVEADD---MVVGVAASPTLTQNINCGGACASRCKLSSRPNLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           KRACGTCCARC+CVPPGTSG Y  CPCYA LTTHGGRRKCP
Sbjct: 63  KRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of CmoCh01G020290 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 218.0 bits (554), Expect = 3.9e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of CmoCh01G020290 vs. NCBI nr
Match: KAG6608594.1 (Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 9.6e-52
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLVAADE+VNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of CmoCh01G020290 vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALVTCVLMSLLVVHLV ADE+VNSIHGVAAHPAN+QSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADEKVNSIHGVAAHPANMQSIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of CmoCh01G020290 vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 100/106 (94.34%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLV AD++VNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVGADDKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of CmoCh01G020290 vs. NCBI nr
Match: XP_022139249.1 (gibberellin-regulated protein 11-like [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MA S LSK L+TCV MSLLV+  V A E+VN   G  A P  IQ+IDCGGACA RCKLSS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHEKVN---GTTADPTKIQNIDCGGACAMRCKLSS 60

Query: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           RPNLCKRACGTCCARC+CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of CmoCh01G020290 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-30
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 6   LSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLC 65
           +SKAL+  +L+SLLV+ LV ADE     +G A      + IDCG AC +RC+LS RP LC
Sbjct: 3   ISKALIASLLISLLVLQLVQADENSQKKNGYA------KKIDCGSACVARCRLSRRPRLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  HRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of CmoCh01G020290 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-29
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 6   LSKALVTCVLMSLLVVHLVAAD-EEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of CmoCh01G020290 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.1e-27
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 8   KALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLCKR 67
           + L+  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRPNLC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of CmoCh01G020290 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of CmoCh01G020290 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-22
Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEEVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPNLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRPNLC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of CmoCh01G020290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	2.4e-29	62.50	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	4.5e-28	62.75	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	7.2e-26	58.59	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46688	1.4e-21	53.76	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
P46687	2.4e-21	52.58	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]

BLAST of CmoCh01G020290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ01	1.9e-53	100.00	gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6J1J2A8	2.3e-51	95.28	gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179...	[more]
A0A6J1CCE1	5.2e-35	73.58	gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A0A0LDK8	7.7e-31	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1	[more]
A0A5D3E7E4	1.3e-30	70.30	Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CmoCh01G020290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940222.1	3.9e-53	100.00	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
KAG6608594.1	9.6e-52	97.17	Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2...	[more]
XP_022982305.1	4.8e-51	95.28	gibberellin-regulated protein 1-like [Cucurbita maxima]	[more]
XP_023525231.1	1.1e-50	94.34	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022139249.1	1.1e-34	73.58	gibberellin-regulated protein 11-like [Momordica charantia]	[more]

BLAST of CmoCh01G020290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.2	1.3e-30	63.37	GAST1 protein homolog 1	[more]
AT1G75750.1	3.2e-29	62.75	GAST1 protein homolog 1	[more]
AT2G18420.1	5.1e-27	58.59	Gibberellin-regulated family protein	[more]
AT4G09610.1	1.0e-22	53.76	GAST1 protein homolog 2	[more]
AT4G09600.1	1.7e-22	52.58	GAST1 protein homolog 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 47..106 e-value: 5.7E-21 score: 74.4
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 6..106
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 6..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G020290.1	CmoCh01G020290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005576	extracellular region