CmoCh01G020000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G020000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	dehydration-responsive element-binding protein 2D-like
Location	Cmo_Chr01: 14118065 .. 14120661 (+)
RNA-Seq Expression	CmoCh01G020000
Synteny	CmoCh01G020000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTTTAGGTGCCATGTAGGCCATAAACAGTCATCTGGGTCCCCTGAGCAAAAGTGCATGCTGTCTCTAATGTATTGTGATTGTACTTGTACATGCTGTCTCTAGTTTTGCTGCGTGCTCTTTTTTACTCTTTATCTTCTTTCATTTTTCAAAGCTTACAATTGTGATGAGATATTGGCTCGCATTGTTGTGTCTCATAGTCACAGTCGGGTTTTGACAAGGAGGAACATGGGAAGAACTCTGCTTTGTTGTGTTTTGCGATGCCATCAAATGGCAGCTTCGTTTATCAGTTTAAGAAAAGCCTTCTGCATCATCAAAGGAGTCGATCGAGTTCTCATTTATTGGACTGTCAAATTTGTAAGTAAGAAAGTGCTGGACCTTTTATTGTAGAAAGCTAGAATTTTAAGAATTTCATTCTTCTAAGATTATGAATGATCCACTGCTCTGAGTTTTAAGTACACACTGGCCGGGACTTCAACTAATTTTCTACTGCTAAAAGCTCGTGTTTGATCCCATCTTAGCACATTAGTTTATATGTGGGAGACATGGTCGCCGTTTGTGCCATGCCGCCCCTTCTGTCATGCAACCGGCTGGAAAATGGCATTTTTTTGAAGCAAGTTAATAGGAGATGTGGTTCGGTTATGCCCGTAGTAGGTACATTTTTTTTTATTTTTTTTCTCTTTTTTTTAATGATGGAATCATGATGGACCTATCTTACGATATCCATAAATGACATGACATAGATAATGAGAAGGTCATGCCACAGTAGAATCTTGATGGATGAATATTCGGGATGTTCTGATGTTATAAACTGAGTCGATGGCATGACCGAGTTAGCTGTGATGACCGATTACACATCAAGACATATGAACCATGCCAATTGAGAACCAAGATAACAAAATGAGAGGAGAGGTCGAGTTGAATGACTTGGCCCAGTGTTAATTCAAGCATTAAAAAAAATTGTTGTTTGAATAATGGAACGTTTTAAAATTAATTTTTGTTAAGAAAAATTATTTTTATTTGACACCAAACAAACATTACATACAATTAAATTTTTATATATATACGCACACAATTGGTCATCCAAATAAAAATAAAATTGGATCCACCAAACGTCTTTGGGAATTGTATTCTGCTTTTCTAAAAATAAAAAAATCGAAAAAAAAATACCACGAAATAATTTAGGTGGAGGATATGTAGAGAGCAGCTTAACGGCTTTCACACGTGTGAGGATCCCTGAAAGTCGCGACAAAATCGGATTAAGAGATAAAATCCGGTTGCCAAAATCCCTATCATCATGGGCCCCACATTCTCTTCGTATGGACGCCACGTCGTCTTATCTATTCAACCTTTGACTAGATCTTATTCTCTGCCTTATTATCCAAAACCCCTCCCCCACCGGAGAAAAAACCAATTAGTCAATTGAATTTTAGTCCTTTGAACAAAGCCTTCAAATTCTAATTCAAAACAATTAATACATGAGGTAAAGATGAAGTTTTGCATTTTAGTCCTTCTTCAAGTTATATTATATTATATAAATACCAACAAACAAATAATTATAGTCTGACTGAAAAAAATCACTAAAATCACTAGAGTGAGACAAGTCAACGATAACTGAACTGTACTTCTTTACTAATTTGAGATTGAACTAAAAAAAAGAGTCCATTTCACGAACAAGACATGAAACTCATTAATTTTATGCAAAATACAAAGAATTAAAACACACTATAAACAAAAAATACACAGAAACCCAAAGAATCATAAGATTCAAGGTAACCCTAATTGAGGGTTTGAAGGGTGGTAGAGAAAGAAGAAGAGAAAAAGAAGAAGTTGGATATTGTTGGGGCTTAGTGTATGAAATTAAGCAAAGGAAGAAGCCAAGTGTATGATTGAGAGACCACCACAGCGTCCAATTGGTGCCACGATCCCACCGATTCGTCATCCCCAGGTAGTGGACTTCCCGCATATCTGCCCACGTCTCTCCCTCCCCTTTTCTATATATATATTCACTTCTCGCCCAAACCTCTTAGACCATTATTTGCGTTATTCTATGTCTTTCATATGTCTCACCTTCAACAATAACAACAATGGAAACAAAGCCCAGAAAACCCACCACCAACGTCGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCCGACAACGCCTCATGCACATTCAAAGGCGTCCGCCAGCGGACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAATCGCGGCGCTCGTCTCTGGCTCGGCACGTTCGACACCGCCCATGAAGCTGCCGTGGCTTACGATGCTGCCGCTCGTAAGCTCTACGGGTCTGATGCTAAGCTCAACCTCCCTCAAACTGCGTCAGAGCCTCAACAGTCTGCGCCCACCGCTGCAATGCCGTCGCCCTCTCCACCGGTGGCGGAGATGGACCCAATCGGAGGGCTGTGGGGAAGTGAGGATGTGAATTTTGATGAGTCGATATGGAGAGAGGCGGTGATGTCTTTGGATTTTCCTATGATTGGTGATGATGAAGGGTTTTATTTCGATGGGGTGGGAGGCCGGGACGCTATGCAGTGGTGCATGTGA

mRNA sequence

ATGTGCTTTAGGTGCCATTTTTGCTGCGTGCTCTTTTTTACTCTTTATCTTCTTTCATTTTTCAAAGCTTACAATTGTGATGAGATATTGGCTCGCATTGTTGTGTCTCATAGTCACAGTCGGGTTTTGACAAGGAGGAACATGGGAAGAACTCTGCTTTGTTGTGTTTTGCGATGCCATCAAATGGCAGCTTCGTTTATCAGTTTAAGAAAAGCCTTCTGCATCATCAAAGGAGTCGATCGAGTTCTCATTTATTGGACTGTCAAATTTACCATTATTTGCGTTATTCTATGTCTTTCATATGTCTCACCTTCAACAATAACAACAATGGAAACAAAGCCCAGAAAACCCACCACCAACGTCGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCCGACAACGCCTCATGCACATTCAAAGGCGTCCGCCAGCGGACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAATCGCGGCGCTCGTCTCTGGCTCGGCACGTTCGACACCGCCCATGAAGCTGCCGTGGCTTACGATGCTGCCGCTCGTAAGCTCTACGGGTCTGATGCTAAGCTCAACCTCCCTCAAACTGCGTCAGAGCCTCAACAGTCTGCGCCCACCGCTGCAATGCCGTCGCCCTCTCCACCGGTGGCGGAGATGGACCCAATCGGAGGGCTGTGGGGAAGTGAGGATGTGAATTTTGATGAGTCGATATGGAGAGAGGCGGTGATGTCTTTGGATTTTCCTATGATTGGTGATGATGAAGGGTTTTATTTCGATGGGGTGGGAGGCCGGGACGCTATGCAGTGGTGCATGTGA

Coding sequence (CDS)

ATGTGCTTTAGGTGCCATTTTTGCTGCGTGCTCTTTTTTACTCTTTATCTTCTTTCATTTTTCAAAGCTTACAATTGTGATGAGATATTGGCTCGCATTGTTGTGTCTCATAGTCACAGTCGGGTTTTGACAAGGAGGAACATGGGAAGAACTCTGCTTTGTTGTGTTTTGCGATGCCATCAAATGGCAGCTTCGTTTATCAGTTTAAGAAAAGCCTTCTGCATCATCAAAGGAGTCGATCGAGTTCTCATTTATTGGACTGTCAAATTTACCATTATTTGCGTTATTCTATGTCTTTCATATGTCTCACCTTCAACAATAACAACAATGGAAACAAAGCCCAGAAAACCCACCACCAACGTCGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCCGACAACGCCTCATGCACATTCAAAGGCGTCCGCCAGCGGACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAATCGCGGCGCTCGTCTCTGGCTCGGCACGTTCGACACCGCCCATGAAGCTGCCGTGGCTTACGATGCTGCCGCTCGTAAGCTCTACGGGTCTGATGCTAAGCTCAACCTCCCTCAAACTGCGTCAGAGCCTCAACAGTCTGCGCCCACCGCTGCAATGCCGTCGCCCTCTCCACCGGTGGCGGAGATGGACCCAATCGGAGGGCTGTGGGGAAGTGAGGATGTGAATTTTGATGAGTCGATATGGAGAGAGGCGGTGATGTCTTTGGATTTTCCTATGATTGGTGATGATGAAGGGTTTTATTTCGATGGGGTGGGAGGCCGGGACGCTATGCAGTGGTGCATGTGA

Protein sequence

MCFRCHFCCVLFFTLYLLSFFKAYNCDEILARIVVSHSHSRVLTRRNMGRTLLCCVLRCHQMAASFISLRKAFCIIKGVDRVLIYWTVKFTIICVILCLSYVSPSTITTMETKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM

Homology

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BLAST of CmoCh01G020000 vs. ExPASy Swiss-Prot
Match: Q9LQZ2 (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=3702 GN=DREB2D PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.8e-40
Identity = 102/193 (52.85%), Postives = 124/193 (64.25%), Query Frame = 0


Query: 99  LSYVSPSTITTMETKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAE 158
           +S + P  +     K ++      QASSRKGCMRGKGGPDNASCT+KGVRQRTWGKWVAE
Sbjct: 1   MSSIEPKVMMVGANKKQR----TVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAE 60

Query: 159 IREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQ-------TASEP-QQSA 218
           IREPNRGARLWLGTFDT+ EAA+AYD+AARKLYG +A LNLP+       TAS P  Q+ 
Sbjct: 61  IREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTASSPASQTT 120

Query: 219 PT------AAMPSPSPPVA-EMDPIGGL-----WGSEDVNF----DESIWREAVMSLDFP 266
           P+      ++  S SP  + EM   G +     W   +V+     D SIW EA MSL FP
Sbjct: 121 PSSNTGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDLPVMDDSSIWEEATMSLGFP 180

[Close]

BLAST of CmoCh01G020000 vs. ExPASy Swiss-Prot
Match: P61827 (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana OX=3702 GN=DREB2G PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.7e-31
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 111 ETKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWL 170
           E +P     N+ +  SRKGCM+GKGGP+NA+CTF+GVRQRTWGKWVAEIREPNRG RLWL
Sbjct: 3   EEQPPAKKRNMGR--SRKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWL 62

Query: 171 GTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQ 208
           GTF+T+ EAA+AYD AA+KLYG +AKLNL     + Q
Sbjct: 63  GTFNTSVEAAMAYDEAAKKLYGHEAKLNLVHPQQQQQ 97

[Close]

BLAST of CmoCh01G020000 vs. ExPASy Swiss-Prot
Match: Q84ZA1 (Dehydration-responsive element-binding protein 2C OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2C PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-29
Identity = 67/101 (66.34%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 126 SRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDA 185
           SRKGCM+GKGGP+N  C F+GVRQRTWGKWVAEIREPNRGARLWLGTF+TA +AA AYD+
Sbjct: 37  SRKGCMKGKGGPENQRCPFRGVRQRTWGKWVAEIREPNRGARLWLGTFNTALDAARAYDS 96

Query: 186 AARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMD 227
           AAR LYG  A+LNL   A+    + P AA PS + P +  D
Sbjct: 97  AARALYGDCARLNL-LLAAATAGAPPAAATPSVATPCSTND 136

[Close]

BLAST of CmoCh01G020000 vs. ExPASy Swiss-Prot
Match: Q9SIZ0 (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana OX=3702 GN=DREB2H PE=5 SV=3)

HSP 1 Score: 125.6 bits (314), Expect = 9.0e-28
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 116 KPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDT 175
           KP        SRKGCM+GKGGP+N  C + GVRQRTWGKWVAEIREP RGA+LWLGTF +
Sbjct: 39  KPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSS 98

Query: 176 AHEAAVAYDAAARKLYGSDAKLNLP 201
           ++EAA+AYD A++ +YG  A+LNLP
Sbjct: 99  SYEAALAYDEASKAIYGQSARLNLP 123

[Close]

BLAST of CmoCh01G020000 vs. ExPASy Swiss-Prot
Match: O82133 (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana OX=3702 GN=DREB2B PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 116 KPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDT 175
           KP   V    S+KGCM+GKGGPDN+ C+F+GVRQR WGKWVAEIREP  G RLWLGTF T
Sbjct: 50  KPKRKVPAKGSKKGCMKGKGGPDNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPT 109

Query: 176 AHEAAVAYDAAARKLYGSDAKLNLPQT 203
           A +AA AYD AA  +YGS A+LN PQ+
Sbjct: 110 AEKAASAYDEAATAMYGSLARLNFPQS 136

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BLAST of CmoCh01G020000 vs. ExPASy TrEMBL
Match: A0A6J1FHE4 (dehydration-responsive element-binding protein 2D-like OS=Cucurbita moschata OX=3662 GN=LOC111445792 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.7e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 229
           LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG
Sbjct: 61  LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 120

Query: 230 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 278
           GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM
Sbjct: 121 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 168

[Close]

BLAST of CmoCh01G020000 vs. ExPASy TrEMBL
Match: A0A6J1IXV0 (dehydration-responsive element-binding protein 2D-like OS=Cucurbita maxima OX=3661 GN=LOC111480905 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.1e-92
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 229
           LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEM+PIG
Sbjct: 61  LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMEPIG 120

Query: 230 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 278
           GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM
Sbjct: 121 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 168

[Close]

BLAST of CmoCh01G020000 vs. ExPASy TrEMBL
Match: A0A5A7V8B4 (Dehydration-responsive element-binding protein 2D OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G00500 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 128/185 (69.19%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           M+ K R    NVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   MDRKSR-TNNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQ--------SAPT----AAMPS 229
           LGTFDTAHEAA+AYDAAARKLYGS+AKLNLPQT + P +         +P+     A PS
Sbjct: 61  LGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTPHELPQLEHGGQSPSNNNIIASPS 120

Query: 230 PSPPVAEM-----DPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDA 278
           P+     M     + IGGLW +E+VNFDESIWREAVMSLDFP+I DD+G +FDG G  D 
Sbjct: 121 PTSSTTTMSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIEDDQGIFFDGAGSWDT 180

[Close]

BLAST of CmoCh01G020000 vs. ExPASy TrEMBL
Match: A0A1S3CRS6 (dehydration-responsive element-binding protein 2D OS=Cucumis melo OX=3656 GN=LOC103504026 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 128/185 (69.19%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           M+ K R    NVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   MDRKSR-TNNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQ--------SAPT----AAMPS 229
           LGTFDTAHEAA+AYDAAARKLYGS+AKLNLPQT + P +         +P+     A PS
Sbjct: 61  LGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTPHELPQLEHGGQSPSNNNIIASPS 120

Query: 230 PSPPVAEM-----DPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDA 278
           P+     M     + IGGLW +E+VNFDESIWREAVMSLDFP+I DD+G +FDG G  D 
Sbjct: 121 PTSSTTTMSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIEDDQGIFFDGAGSWDT 180

[Close]

BLAST of CmoCh01G020000 vs. ExPASy TrEMBL
Match: A0A0A0LE58 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G865380 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 8.4e-61
Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           M+ K R    NVAQASSRKGCMRGKGGPDNA+CTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   MDRKSR-TNNNVAQASSRKGCMRGKGGPDNAACTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEP----------QQSAPTAAMPSPS 229
           LGTFDTAHEAA+AYDAAARKLYGS+AKLNLPQT +            Q  +    + SPS
Sbjct: 61  LGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTSHELPQLEHGGQSPSNNNIIASPS 120

Query: 230 P-------PVAEMDPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDA 278
           P         + ++ IGGLW +E+VNFDESIWREAVMSLDFP+I +D+G +FDG G  DA
Sbjct: 121 PTGTTTTVSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIENDQGIFFDGAGSWDA 180

[Close]

BLAST of CmoCh01G020000 vs. NCBI nr
Match: XP_022940041.1 (dehydration-responsive element-binding protein 2D-like [Cucurbita moschata] >KAG6608564.1 Dehydration-responsive element-binding protein 2D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.3 bits (900), Expect = 7.7e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 229
           LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG
Sbjct: 61  LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 120

Query: 230 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 278
           GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM
Sbjct: 121 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 168

[Close]

BLAST of CmoCh01G020000 vs. NCBI nr
Match: XP_022981906.1 (dehydration-responsive element-binding protein 2D-like [Cucurbita maxima])

HSP 1 Score: 349.7 bits (896), Expect = 2.2e-92
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 229
           LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEM+PIG
Sbjct: 61  LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMEPIG 120

Query: 230 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 278
           GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM
Sbjct: 121 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 168

[Close]

BLAST of CmoCh01G020000 vs. NCBI nr
Match: XP_023525554.1 (dehydration-responsive element-binding protein 2D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 1.6e-90
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIR+PNRGARLW
Sbjct: 1   METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIRQPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIG 229
           LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPT AMPS SPPVAEM+P+G
Sbjct: 61  LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTVAMPSASPPVAEMEPVG 120

Query: 230 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 278
           GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM
Sbjct: 121 GLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 168

[Close]

BLAST of CmoCh01G020000 vs. NCBI nr
Match: XP_038899630.1 (dehydration-responsive element-binding protein 2D-like [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-63
Identity = 130/180 (72.22%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 110 METKPRKPTT--NVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGAR 169
           M+ KPR   T  +VAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGAR
Sbjct: 1   MDGKPRNTITANSVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGAR 60

Query: 170 LWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQ----------QSAPTAAMPS 229
           LWLGTFDTAHEAAVAYDAAARKLYGS+AKLNLPQT   P           Q +PTA    
Sbjct: 61  LWLGTFDTAHEAAVAYDAAARKLYGSEAKLNLPQTTPPPHDQLSQLEHGGQPSPTATTTM 120

Query: 230 PSPPVAEMDPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 278
            S   + ++ IG LWGSE+VNFDESIWREAVMSLDFP+I DD+G +FDGV   D +QWCM
Sbjct: 121 KSLS-SSVERIGELWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVSNWDTLQWCM 179

[Close]

BLAST of CmoCh01G020000 vs. NCBI nr
Match: XP_008466672.1 (PREDICTED: dehydration-responsive element-binding protein 2D [Cucumis melo] >KAA0063237.1 dehydration-responsive element-binding protein 2D [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-62
Identity = 128/185 (69.19%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 110 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 169
           M+ K R    NVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW
Sbjct: 1   MDRKSR-TNNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLW 60

Query: 170 LGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQ--------SAPT----AAMPS 229
           LGTFDTAHEAA+AYDAAARKLYGS+AKLNLPQT + P +         +P+     A PS
Sbjct: 61  LGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTPHELPQLEHGGQSPSNNNIIASPS 120

Query: 230 PSPPVAEM-----DPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDA 278
           P+     M     + IGGLW +E+VNFDESIWREAVMSLDFP+I DD+G +FDG G  D 
Sbjct: 121 PTSSTTTMSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIEDDQGIFFDGAGSWDT 180

[Close]

BLAST of CmoCh01G020000 vs. TAIR 10
Match: AT1G75490.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-41
Identity = 102/193 (52.85%), Postives = 124/193 (64.25%), Query Frame = 0


Query: 99  LSYVSPSTITTMETKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAE 158
           +S + P  +     K ++      QASSRKGCMRGKGGPDNASCT+KGVRQRTWGKWVAE
Sbjct: 1   MSSIEPKVMMVGANKKQR----TVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAE 60

Query: 159 IREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQ-------TASEP-QQSA 218
           IREPNRGARLWLGTFDT+ EAA+AYD+AARKLYG +A LNLP+       TAS P  Q+ 
Sbjct: 61  IREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTASSPASQTT 120

Query: 219 PT------AAMPSPSPPVA-EMDPIGGL-----WGSEDVNF----DESIWREAVMSLDFP 266
           P+      ++  S SP  + EM   G +     W   +V+     D SIW EA MSL FP
Sbjct: 121 PSSNTGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDLPVMDDSSIWEEATMSLGFP 180

[Close]

BLAST of CmoCh01G020000 vs. TAIR 10
Match: AT5G18450.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 6.2e-32
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 111 ETKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWL 170
           E +P     N+ +  SRKGCM+GKGGP+NA+CTF+GVRQRTWGKWVAEIREPNRG RLWL
Sbjct: 3   EEQPPAKKRNMGR--SRKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWL 62

Query: 171 GTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQ 208
           GTF+T+ EAA+AYD AA+KLYG +AKLNL     + Q
Sbjct: 63  GTFNTSVEAAMAYDEAAKKLYGHEAKLNLVHPQQQQQ 97

[Close]

BLAST of CmoCh01G020000 vs. TAIR 10
Match: AT2G40350.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 6.4e-29
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 116 KPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDT 175
           KP        SRKGCM+GKGGP+N  C + GVRQRTWGKWVAEIREP RGA+LWLGTF +
Sbjct: 39  KPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSS 98

Query: 176 AHEAAVAYDAAARKLYGSDAKLNLP 201
           ++EAA+AYD A++ +YG  A+LNLP
Sbjct: 99  SYEAALAYDEASKAIYGQSARLNLP 123

[Close]

BLAST of CmoCh01G020000 vs. TAIR 10
Match: AT2G40340.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 8.4e-29
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 126 SRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDA 185
           SRKGCM+GKGGP+N  C ++GVRQR WGKWVAEIREP+ GARLWLGTF +++EAA+AYD 
Sbjct: 54  SRKGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDE 113

Query: 186 AARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIGGLWGSEDVN 239
           AA+ +YG  A+LNLP+  +   +S+ TAA  + S  V        +   ED N
Sbjct: 114 AAKAIYGQSARLNLPEITN---RSSSTAATATVSGSVTAFSDESEVCAREDTN 163

[Close]

BLAST of CmoCh01G020000 vs. TAIR 10
Match: AT3G11020.1 (DRE/CRT-binding protein 2B )

HSP 1 Score: 125.2 bits (313), Expect = 8.4e-29
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 116 KPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDT 175
           KP   V    S+KGCM+GKGGPDN+ C+F+GVRQR WGKWVAEIREP  G RLWLGTF T
Sbjct: 50  KPKRKVPAKGSKKGCMKGKGGPDNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPT 109

Query: 176 AHEAAVAYDAAARKLYGSDAKLNLPQT 203
           A +AA AYD AA  +YGS A+LN PQ+
Sbjct: 110 AEKAASAYDEAATAMYGSLARLNFPQS 136

The following BLAST results are available for this feature:

BLAST of CmoCh01G020000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQZ2	7.8e-40	52.85	Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=370...	[more]
P61827	8.7e-31	67.01	Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana OX=370...	[more]
Q84ZA1	2.1e-29	66.34	Dehydration-responsive element-binding protein 2C OS=Oryza sativa subsp. japonic...	[more]
Q9SIZ0	9.0e-28	64.71	Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thalia...	[more]
O82133	1.2e-27	66.67	Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmoCh01G020000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHE4	3.7e-93	100.00	dehydration-responsive element-binding protein 2D-like OS=Cucurbita moschata OX=...	[more]
A0A6J1IXV0	1.1e-92	99.40	dehydration-responsive element-binding protein 2D-like OS=Cucurbita maxima OX=36...	[more]
A0A5A7V8B4	1.5e-62	69.19	Dehydration-responsive element-binding protein 2D OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3CRS6	1.5e-62	69.19	dehydration-responsive element-binding protein 2D OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LE58	8.4e-61	67.57	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G865380 PE=...	[more]

BLAST of CmoCh01G020000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940041.1	7.7e-93	100.00	dehydration-responsive element-binding protein 2D-like [Cucurbita moschata] >KAG...	[more]
XP_022981906.1	2.2e-92	99.40	dehydration-responsive element-binding protein 2D-like [Cucurbita maxima]	[more]
XP_023525554.1	1.6e-90	97.02	dehydration-responsive element-binding protein 2D-like [Cucurbita pepo subsp. pe...	[more]
XP_038899630.1	3.7e-63	72.22	dehydration-responsive element-binding protein 2D-like [Benincasa hispida]	[more]
XP_008466672.1	3.2e-62	69.19	PREDICTED: dehydration-responsive element-binding protein 2D [Cucumis melo] >KAA...	[more]

BLAST of CmoCh01G020000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75490.1	5.6e-41	52.85	Integrase-type DNA-binding superfamily protein	[more]
AT5G18450.1	6.2e-32	67.01	Integrase-type DNA-binding superfamily protein	[more]
AT2G40350.1	6.4e-29	64.71	Integrase-type DNA-binding superfamily protein	[more]
AT2G40340.1	8.4e-29	54.87	Integrase-type DNA-binding superfamily protein	[more]
AT3G11020.1	8.4e-29	66.67	DRE/CRT-binding protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 144..155 score: 58.94 coord: 166..182 score: 65.67
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 143..206 e-value: 1.6E-35 score: 134.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 143..192 e-value: 5.2E-14 score: 52.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 143..200 score: 22.181049
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 142..202 e-value: 2.38057E-22 score: 85.7863
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 143..201 e-value: 3.3E-25 score: 90.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..137
None	No IPR available	PANTHER	PTHR31241:SF53	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	coord: 120..218
None	No IPR available	PANTHER	PTHR31241	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	coord: 120..218
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 143..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G020000.1	CmoCh01G020000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding