CmoCh01G019850 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G019850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L31
LocationCmo_Chr01: 14041411 .. 14042293 (+)
RNA-Seq ExpressionCmoCh01G019850
SyntenyCmoCh01G019850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAGTGAAGTGGAACTCATCTCCCCCATCTGTTCTTCCTCCCACTTATCCTCTCTTCATCGCAACCGCAGCAATGGCGCTCAACCTAACAAATTCCTTTCTTCAACGGCCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGTAATTTCCCCGTTTTTTCACTTCTCAATTTTCCGAAGATGGTGACTGTTCATCTCTATTGCCCTAAATTTCTGTGTAATTTCCAGGAGTTGGGAGCGAGACGTTACCGGGCGGTGGTGACCTGCCGGAAAAAGGATATTCATCCCCAATTCTACGAGGATGCGAAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACTCAGAAAGAGTACTCCGTGGATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGCTCCGCTCTGCTAGTCGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAATTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCCACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAGAAGACTAGGGAATTCAATTAGCCTGGTAACAATTTAAATTCAAATGCATATTGAGATTTTTGGTTCTTCTATTGCATCATATATCTGTGTAATTTATCACAATCGAAACTAATTTGTCTGAATTCAACCGCTTGTTTCTGTCAAATGCCTTGCATTGCCTCGCTGTTCTTTAAATGCTCATTGTTGATGAAGAGTTTGATGGGTCTGCTGTAGACTTGTTCTTCGTCTGTTCAATTTTCTTTCTAGCCATCAGCTGGATACCCATTTGATCATTATTTGGGTTTTAAAACTTGAGCTTATATATAAATGCTTACTTCCTCAG

mRNA sequence

ACGAGTGAAGTGGAACTCATCTCCCCCATCTGTTCTTCCTCCCACTTATCCTCTCTTCATCGCAACCGCAGCAATGGCGCTCAACCTAACAAATTCCTTTCTTCAACGGCCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGAGTTGGGAGCGAGACGTTACCGGGCGGTGGTGACCTGCCGGAAAAAGGATATTCATCCCCAATTCTACGAGGATGCGAAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACTCAGAAAGAGTACTCCGTGGATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGCTCCGCTCTGCTAGTCGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAATTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCCACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAGAAGACTAGGGAATTCAATTAGCCTGGTAACAATTTAAATTCAAATGCATATTGAGATTTTTGGTTCTTCTATTGCATCATATATCTGTGTAATTTATCACAATCGAAACTAATTTGTCTGAATTCAACCGCTTGTTTCTGTCAAATGCCTTGCATTGCCTCGCTGTTCTTTAAATGCTCATTGTTGATGAAGAGTTTGATGGGTCTGCTGTAGACTTGTTCTTCGTCTGTTCAATTTTCTTTCTAGCCATCAGCTGGATACCCATTTGATCATTATTTGGGTTTTAAAACTTGAGCTTATATATAAATGCTTACTTCCTCAG

Coding sequence (CDS)

ATGGCGCTCAACCTAACAAATTCCTTTCTTCAACGGCCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGAGTTGGGAGCGAGACGTTACCGGGCGGTGGTGACCTGCCGGAAAAAGGATATTCATCCCCAATTCTACGAGGATGCGAAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACTCAGAAAGAGTACTCCGTGGATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGCTCCGCTCTGCTAGTCGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAATTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCCACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAG

Protein sequence

MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
Homology
[Close]
BLAST of CmoCh01G019850 vs. ExPASy Swiss-Prot
Match: Q9FWS4 (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-46
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 0 

Query: 1   MALNLTNSFLQ--------RPFSPAIAPPKNKELGARRYRAVV---TCRKKDIHPQFYED 60
           MA++L NSFLQ        +   P +A  K  +   RR    V   TCRKK++HP+F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 61  AKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLM 120
           AKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+VDADQVEKFRK+F  LS++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

Query: 121 EIPVLKGEIVLPTKRKSGGKGKKK 134
           EIPVLKGEI++PTK+  G KGKKK
Sbjct: 121 EIPVLKGEIIMPTKKSKGPKGKKK 144

[Close]
BLAST of CmoCh01G019850 vs. ExPASy Swiss-Prot
Match: P82249 (50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 PE=1 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 9.6e-44
Identity = 91/135 (67.41%), Postives = 108/135 (80.00%), Query Frame = 0 

Query: 1   MALNLTNSFLQR-PFSP-AIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGEL 60
           M L L+N FL + P +P  +  PK     +   R   +CRK DIHP+F EDAKVYCNGEL
Sbjct: 1   MVLTLSNQFLAKIPATPKTLTLPKT---SSSTLRPQWSCRKSDIHPEFREDAKVYCNGEL 60

Query: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 120
           VMTTGGTQK+Y+V+VWSGNHPFYLG+RSALL+DADQVEKFRKK+GEL+Q+MEIPVLKGEI
Sbjct: 61  VMTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEI 120

Query: 121 VLPTKRKSGGKGKKK 134
           +LP K+KS  K KKK
Sbjct: 121 ILPPKKKS--KAKKK 130

[Close]
BLAST of CmoCh01G019850 vs. ExPASy Swiss-Prot
Match: Q7V9Y9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=rpmE PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-17
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 39  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF 98
           KKDIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNHPF+ G++  L  +  +V++F
Sbjct: 3   KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRF 62

Query: 99  RKKFG 104
            +K+G
Sbjct: 63  MRKYG 66

[Close]
BLAST of CmoCh01G019850 vs. ExPASy Swiss-Prot
Match: Q31L35 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmE PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 39  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGEL 106
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]
BLAST of CmoCh01G019850 vs. ExPASy Swiss-Prot
Match: Q5N0T7 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmE PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 39  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGEL 106
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]
BLAST of CmoCh01G019850 vs. ExPASy TrEMBL
Match: A0A6J1FQS6 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111446395 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.6e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]
BLAST of CmoCh01G019850 vs. ExPASy TrEMBL
Match: A0A6J1J0F9 (50S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480796 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQR FSPAIAPPKNKELGARRYR VVTCRKKD+HPQFYEDAKVYCNGELVM
Sbjct: 42  MALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQFYEDAKVYCNGELVM 101

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 102 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 161

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 162 PTKRKSGGKGKKK 174

[Close]
BLAST of CmoCh01G019850 vs. ExPASy TrEMBL
Match: A0A6J1FCM8 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRP SP +APPK KE GAR +RAVVTCRKKD+HPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]
BLAST of CmoCh01G019850 vs. ExPASy TrEMBL
Match: A0A6J1IKY2 (50S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 123/133 (92.48%), Postives = 128/133 (96.24%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRP SP +APPK KE GAR +RAVVTCRKKD+HPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI+L
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIIL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]
BLAST of CmoCh01G019850 vs. ExPASy TrEMBL
Match: A0A0A0LDC9 (50S ribosomal protein L31 OS=Cucumis sativus OX=3659 GN=Csa_3G859720 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 122/135 (90.37%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MALNLTNSF--LQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGEL 60
           MALNLTNSF  LQRP SPA+APPK KE GAR YR VVTCRKKD+HPQFYEDAKVYCNGEL
Sbjct: 1   MALNLTNSFLQLQRPISPAVAPPKRKESGARSYRPVVTCRKKDLHPQFYEDAKVYCNGEL 60

Query: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 120
           VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI
Sbjct: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 120

Query: 121 VLPTKRKSGGKGKKK 134
           +LP+KRKS  KGKKK
Sbjct: 121 ILPSKRKS-AKGKKK 134

[Close]
BLAST of CmoCh01G019850 vs. NCBI nr
Match: XP_022940973.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata] >XP_022940974.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 7.5e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]
BLAST of CmoCh01G019850 vs. NCBI nr
Match: XP_023523361.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.9 bits (694), Expect = 2.8e-69
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYR VVTCRKKDIHPQFYEDAKVYCNGELVM
Sbjct: 48  MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHPQFYEDAKVYCNGELVM 107

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 108 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 167

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 168 PTKRKSGGKGKKK 180

[Close]
BLAST of CmoCh01G019850 vs. NCBI nr
Match: KAG6608549.1 (50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.9 bits (694), Expect = 2.8e-69
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPFSPAIAPPKNKELGARRYR VVTCRKKDIHPQFYEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]
BLAST of CmoCh01G019850 vs. NCBI nr
Match: XP_022981730.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.1e-68
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQR FSPAIAPPKNKELGARRYR VVTCRKKD+HPQFYEDAKVYCNGELVM
Sbjct: 42  MALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQFYEDAKVYCNGELVM 101

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 102 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 161

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 162 PTKRKSGGKGKKK 174

[Close]
BLAST of CmoCh01G019850 vs. NCBI nr
Match: XP_022936208.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 0 

Query: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRAVVTCRKKDIHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRP SP +APPK KE GAR +RAVVTCRKKD+HPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKSGGKGKKK 134
           PTKRKSGGKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]
BLAST of CmoCh01G019850 vs. TAIR 10
Match: AT1G75350.1 (Ribosomal protein L31 )

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-47
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 0 

Query: 1   MALNLTNSFLQ--------RPFSPAIAPPKNKELGARRYRAVV---TCRKKDIHPQFYED 60
           MA++L NSFLQ        +   P +A  K  +   RR    V   TCRKK++HP+F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 61  AKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLM 120
           AKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+VDADQVEKFRK+F  LS++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

Query: 121 EIPVLKGEIVLPTKRKSGGKGKKK 134
           EIPVLKGEI++PTK+  G KGKKK
Sbjct: 121 EIPVLKGEIIMPTKKSKGPKGKKK 144

The following BLAST results are available for this feature:
BLAST of CmoCh01G019850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FWS43.5e-4664.5850S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P822499.6e-4467.4150S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 P... [more]
Q7V9Y92.0e-1760.0050S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / S... [more]
Q31L352.0e-1760.2950S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80... [more]
Q5N0T72.0e-1760.2950S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S... [more]
BLAST of CmoCh01G019850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FQS63.6e-70100.0050S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111446395 PE=3 SV=... [more]
A0A6J1J0F91.5e-6897.7450S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FCM81.2e-6593.2350S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=... [more]
A0A6J1IKY21.6e-6592.4850S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1[more]
A0A0A0LDC91.8e-6190.3750S ribosomal protein L31 OS=Cucumis sativus OX=3659 GN=Csa_3G859720 PE=3 SV=1[more]
BLAST of CmoCh01G019850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940973.17.5e-70100.0050S ribosomal protein L31, chloroplastic-like [Cucurbita moschata] >XP_022940974... [more]
XP_023523361.12.8e-6999.2550S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG6608549.12.8e-6999.2550S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022981730.13.1e-6897.7450S ribosomal protein L31, chloroplastic-like [Cucurbita maxima][more]
XP_022936208.12.5e-6593.2350S ribosomal protein L31, chloroplastic-like [Cucurbita moschata][more]
BLAST of CmoCh01G019850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G75350.12.5e-4764.58Ribosomal protein L31 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002150Ribosomal protein L31PRINTSPR01249RIBOSOMALL31coord: 39..56
score: 36.94
coord: 68..83
score: 49.69
IPR002150Ribosomal protein L31TIGRFAMTIGR00105TIGR00105coord: 39..104
e-value: 6.4E-16
score: 56.2
IPR002150Ribosomal protein L31PFAMPF01197Ribosomal_L31coord: 39..103
e-value: 8.3E-18
score: 64.4
IPR002150Ribosomal protein L31PANTHERPTHR3328050S RIBOSOMAL PROTEIN L31, CHLOROPLASTICcoord: 29..133
IPR042105Ribosomal protein L31 superfamilyGENE3D4.10.830.30Ribosomal protein L31coord: 39..106
e-value: 2.7E-18
score: 67.8
NoneNo IPR availablePANTHERPTHR33280:SF550S RIBOSOMAL PROTEIN L31coord: 29..133
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 39..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019850.1CmoCh01G019850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome