CmoCh01G019800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G019800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA polymerase epsilon catalytic subunit A, putative
Location	Cmo_Chr01: 14016810 .. 14021406 (+)
RNA-Seq Expression	CmoCh01G019800
Synteny	CmoCh01G019800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTATATATATATATATATATTTGTTTGTAATAACAAACCAAATCAGATTATCAGCAATTTGAAGAGAGAAGAAAAGCTAGTATTTTGAGAGATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGGTAAAGCTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTAAATGAAATTATTAATTGTAATTATTTGCAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGTATGGTCTGGTTAAGTCAACTGTGTTCTGACTTTTTATGTTGTAATTTTGAGTTTATTTATTTATTTATTTATTTTTATTTTTGGCAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTAATTTATTTATTTATTTTTTTTATTTATTTTTTTTAAATATGATAATTGGAATATTTGAAGATGAGGGTTTATGACAAAAACTTGCGGTTTTATCAGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATTGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGGTCGTGGTGGAGTCGGTGCTTGAAAAACCCGGTCGGATTTGTATGTGTTCAGATAATGTAAAGAAAAAAAAAAAGAAGAGTAATTATATTAGAATTCTTCTGAATTCGAGTGGTCAGTTTATAATTTTATGGGGTTTTTTTTTAATTTTTTTAAATCATTTTATGACGTGGAAGTATTGTGTAAAAATATTAGATATTTTAAATATACAGTCTCATATTGAGATAATTTGTGTTTATTTTCCTAATAATATCTCACATATAATTTTTAAATTAATGAATGTAAAATGTTTTTAATAATAAATTTACCCGACATGAGGTAGATTAGGTGTATTATTGACTCACCTAAGAGGGAAAGTAAGGGGCCCGATTCCATGCAATAATTAAAAAATGTTAAAACATAAGCATTACCAAACATTATAAAATAATTAATAATATTATATTAAATAAACATTTGTGGGGCCCACCAAATAAGAAGGCCATGCGTATTTTCTGGAAGGTACTGGTCAGTGGCAGTAGGTGCGTGCCTACGTCATGAGAAAAGACAGGATAGGGTACCCTAATAATATCAATGCTTTCTGAAAGTAAAACATACATGTTCCGCCATTTATGAGATATATATTCCTCAGAAAATATATTATTTAAAAATAATTAGAGAAATTCTTTCAGTTGGGCCTTTGGGCCCATACAACGTCCAGACTGCCTGATTGCCAGTTATGGGCCCGGCCCTAAAATTTGCGCTACAAGGCCCATGTAAACGATTTTTGTTCCCCATTCTTTCTTTCCCGACAAAATGTAGACGTTAACTTAAGGGAGAGGGAAACCATGCTTAGGCAGCTACGCTTTTCAAGAATGCCACAATTTTATAATCATAATCACGAGCATAAAAGAGAATAATACGCCCTTTTTATCGTTTTAGAAACATGGTATTTAACGATCATTCAAAATGGTATCATTTTGTCTAGGATATTTCATTAATCTCTATTTTCACACAATTGCCTCTCATTTTGACGGGCATACTTATAATGTACATTAATTTGATGTCGATGGTAAACCGTCGACGTAACGAACCATGGTCTCATTGGACCCTCTCTTGAAAGTGTGTAGAAAAGCAAGGATAGAAGAAGAAGAAATTATTGTGACTCAAATTCAAGTACACGAAAGAGAGAGAAAGATGAGGCAGGATTTTGGTCTCCAATGATAAAAAAAGCAGTGTGGTTCTCAAAGTTGGCACATGATTGGCTACTCAAATCCCTATGAAAGCGTTCCATCCAAATCTACTGCATGAGTGCAAAATTATGGTCAAATAAACAATTCAACATCATACTCAATTACTCATACTCCTTTAAAAATTAAAAAATTAAAAGCCTCATTACAACTTTATTTCAATAATATCTTTTGTTACTTTCATTCCCTACGTACAGTCGTCTGTCCACGAATTTAAAATTAGATAGAGGTTGTCACACCTATATAAGGAATGCGATATGCGGCTTTACAATCCACTTCTTTGGGAGCCAGCATCCTTATTAGTACATTATTTTGTGCTTGATTTGATACCATGTATAACAATCTAAACTCACTACTAATAAATATTAACGTGTCAATCTCACAATTTTAAAATTTATTTGATAGTGAGATTTCAACACCTTCATAAAAAATGATTCATGGTCTGACAAATGGTCCGAAAATGAAATGATGACGAAGGGAGGCAGGCAGCGTCAAAAGGAAATGAGGGACACAAAAGCTGAAACGGGCACAGCCATGCCGATGCCCATTCCCACCAACCACTGCCGCTCTGCTTTTATTAATTGCTTTAAATTTACATATTGGGAGAGCCAGAGGCCCCCATTATTAAATCAATTCATAGGCGCGTGGCCCCGTACCTTAGTTTTTTAAAATTCAAGCCGAGGTCAAAGGGTGTTGCCCTTGCCCGACCCCATGCCCGACCCCCTCGCCCCTACCCTACTCTCCAGTCACTTTATCAAAGATTCACAAATGTGGATTTTTTTTTTCTTAATTTATTTGATTTTTTAAAATTTAACTTAATTTTTTAAAATATGGGTGCAAAGTATATAATAAAATAATTTTTATTTTTAAAATAATAAGGTATAACCATAAGTTAAGTTTTGAAAATTCATGCATACTTTATTTATTTATTCGTGGGTAAAAAAAAATTATTATTGTTATTTTTTAAGTAATAAGTTTAAATTAACACATTTCAAATTCAAAAGCTTATTCCTTCAGGAGACAAAAATTAATTTATATTTAATTATCGATTTGAACGTTACGGAGGCAAAAAAGGTCGGTGATAATTGAATCAATGGATCATTGACAACTATTATCAATAGTGAAGAGGCCTAGTGGGCCCATTTTGTTCCTCTTTCCAAACGCCCAATTATTTTCCAATAGTTCCATCAATAGGTCATCTTCTCAAATTCTCGGTTGATCTCTCGCCTTTTAGAGGAAGACATAGATTCGTGTAAACCCACGATTATTGATTGTAACTTAAATCTCTTACCCGTCTATATCACATACTTCACTGACGGTCGATTTAAGTTATTACAACAAGGTTTATATTCATATTATATTAAAAAATCTGAAATCAATAACAAAAGTCATTTGAGACGTGCAGTTGTATGCCAAATTAATTTAAGAGGTCGATGTCGTTATTATTTTATTTTTAAATGCATTTGTTAATAATAATAATTATTTCATTGTTGTGCAATTCACTTTTCCAAATTAATTTCAACTATGTACGTCACGTGTTAGTAAATGTATTCACATTCATGTTATTATTGGTTAAATAAAATAAGCAAAAATACGTGAATGCGGCTGCTTTGGCAATTAAATTGCAATAAATTTAAATCGTCATTACAAGTTACAGCCCAGTCAAAGACTCTAAGGTAAAACTTTAGGTAAAAAAATAAAGGGGGAAGAAAGGTATATACGGCTTGCAAGCAACTGTAAAAGGGTAGTTTTAGTTAATTTAAAATCCCTAAAGATTTGATTTAATTTACCAGTTTTATTTATTTATATTTTTAGACTACAATTAATAAATCTTAAATTTAGTAAGAATAATTCAGTGAACAAAATACTAAATAATCATATTAATTTAACCTTATGCAATAAATTAATTTTAAACGGTAAAAATAAACTATTTAAAGTAATTTGAACTCTATCTTGCTTATTAAATTTAGTTATTTAATTTTAAAATATTCGAAGTGAACATTTTCGAGTTGAAATAAATTTTAAAAAATAAATTGATTTAATTAATTTGCACTTGAATATGTATTTTTTTTTTTTTTTTTAAAATATTTTTGTGCACATTTGAATGCATAGTGGTAACAAAAGCAGATAGACACGGAAACTAATTTGTGATACGTCGTCGTTTGGTAGATTTTTGACAGCTATAGATGAGTTGGTGGTAAGAACAGTAAATCTGTCACTTTTCCCAAAAGGTTCGAAAGTCACGAGCGTAATTACAATCCTGCCATTGTGTGTTTTTGATATGCGTGATTTGCAACACGTTCAACAAGAACAAACATCCACGGTGAGTCCTGACAGTAGAAAAGCCAATTAAATTCCACATATGACGGATAGTGACTTCGGCCTATTTCCGTCGCCGACCGCCTTCTCCGGACAGTTTGCCGGCCACCGATCGTGACTCAACCGCTTCCATTGTTTAGTCAGCAAGTATGTGGCCTCTTCACCGTCAGACTGCGTTTCATTTCGCCCTCTTTCTTGGCAACTTCTCTCATTCGCTTTCTTCATTATCTCTTCTTTGACTCTGTAAACTATTTTGCAGAGAACGACCGGGGAGAAGAAAATAA

mRNA sequence

GTGTATATATATATATATATATTTGTTTGTAATAACAAACCAAATCAGATTATCAGCAATTTGAAGAGAGAAGAAAAGCTAGTATTTTGAGAGATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATTGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGATAATGTAAAGAAAAAAAAAAAGAAGAGTAATTATATTAGAATTCTTCTGAATTCGAGTGGTCAGTTTATAATTTTATGGGGTTTTTTTTTAATTTTTTTAAATCATTTTATGACGTGGAAATTTTTGACAGCTATAGATGAGTTGGTGGTAAGAACAGTAAATCTGTCACTTTTCCCAAAAGTCAGCAAAGAACGACCGGGGAGAAGAAAATAA

Coding sequence (CDS)

ATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATTGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGATAATGTAAAGAAAAAAAAAAAGAAGAGTAATTATATTAGAATTCTTCTGAATTCGAGTGGTCAGTTTATAATTTTATGGGGTTTTTTTTTAATTTTTTTAAATCATTTTATGACGTGGAAATTTTTGACAGCTATAGATGAGTTGGTGGTAAGAACAGTAAATCTGTCACTTTTCCCAAAAGTCAGCAAAGAACGACCGGGGAGAAGAAAATAA

Protein sequence

MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLDNVKKKKKKSNYIRILLNSSGQFIILWGFFLIFLNHFMTWKFLTAIDELVVRTVNLSLFPKVSKERPGRRK

Homology

[Close]

BLAST of CmoCh01G019800 vs. ExPASy TrEMBL
Match: A0A6J1FHE8 (uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC111445795 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.5e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRL 139
           GNSYVSQFHVANVAASRL
Sbjct: 121 GNSYVSQFHVANVAASRL 138

[Close]

BLAST of CmoCh01G019800 vs. ExPASy TrEMBL
Match: A0A6J1J1T2 (uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.2e-73
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGLLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRL 139
           GNSYVSQFHVANVAASRL
Sbjct: 121 GNSYVSQFHVANVAASRL 138

[Close]

BLAST of CmoCh01G019800 vs. ExPASy TrEMBL
Match: A0A5D3D820 (Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00760 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 6.8e-55
Identity = 111/139 (79.86%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           + E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEPP  EG
Sbjct: 61  EKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEPPETEG 120

Query: 121 SGNSYVSQFHVANVAASRL 139
           SGNSYVSQFHVAN+AASRL
Sbjct: 121 SGNSYVSQFHVANMAASRL 137

[Close]

BLAST of CmoCh01G019800 vs. ExPASy TrEMBL
Match: A0A6J1DA26 (uncharacterized protein LOC111018241 OS=Momordica charantia OX=3673 GN=LOC111018241 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 6.8e-55
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAIL-SPFQSCEEI 60
           MGSLMAGW   ASDPE+VSHRRNKSLT+EEIEAFWKTKKQL EEHL+AIL  P +S +EI
Sbjct: 1   MGSLMAGW---ASDPEQVSHRRNKSLTREEIEAFWKTKKQLEEEHLKAILRDPLESSDEI 60

Query: 61  KKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           KKVEFGG NLQRS+SVPP NT K F+ MESEA L+ KPKKNGWWRRSNWAFLNEPPV EG
Sbjct: 61  KKVEFGG-NLQRSNSVPPLNTNKSFMAMESEADLEEKPKKNGWWRRSNWAFLNEPPVTEG 120

Query: 121 SGNSYVSQFHVANVAASR 138
           SGN YVSQFHVANVAAS+
Sbjct: 121 SGNRYVSQFHVANVAASK 134

[Close]

BLAST of CmoCh01G019800 vs. ExPASy TrEMBL
Match: A0A1S3CST6 (uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 6.8e-55
Identity = 111/139 (79.86%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           + E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEPP  EG
Sbjct: 61  EKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEPPETEG 120

Query: 121 SGNSYVSQFHVANVAASRL 139
           SGNSYVSQFHVAN+AASRL
Sbjct: 121 SGNSYVSQFHVANMAASRL 137

[Close]

BLAST of CmoCh01G019800 vs. NCBI nr
Match: XP_022940046.1 (uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothetical protein SDJN03_01886, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037867.1 hypothetical protein SDJN02_01498 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRL 139
           GNSYVSQFHVANVAASRL
Sbjct: 121 GNSYVSQFHVANVAASRL 138

[Close]

BLAST of CmoCh01G019800 vs. NCBI nr
Match: XP_022982140.1 (uncharacterized protein LOC111481065 [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 6.7e-73
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGLLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRL 139
           GNSYVSQFHVANVAASRL
Sbjct: 121 GNSYVSQFHVANVAASRL 138

[Close]

BLAST of CmoCh01G019800 vs. NCBI nr
Match: XP_023525160.1 (uncharacterized protein LOC111788844 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 8.7e-73
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKGFLDMESEA LDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEAGLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRL 139
           GNSYVSQFHVANV+ASRL
Sbjct: 121 GNSYVSQFHVANVSASRL 138

[Close]

BLAST of CmoCh01G019800 vs. NCBI nr
Match: XP_038898962.1 (uncharacterized protein LOC120086405 [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 114/138 (82.61%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETSEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           K+E GG NLQRS+S+PPF T KG L+MESE +L+ KPKKN WWRRSNWAFLNEPP  EGS
Sbjct: 61  KMENGG-NLQRSASLPPFKTGKGLLEMESEKNLE-KPKKNAWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANVAASRL 139
           GNSYVSQFHVAN+AASRL
Sbjct: 121 GNSYVSQFHVANMAASRL 135

[Close]

BLAST of CmoCh01G019800 vs. NCBI nr
Match: XP_008466545.1 (PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa] >TYK19682.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 1.4e-54
Identity = 111/139 (79.86%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           + E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEPP  EG
Sbjct: 61  EKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEPPETEG 120

Query: 121 SGNSYVSQFHVANVAASRL 139
           SGNSYVSQFHVAN+AASRL
Sbjct: 121 SGNSYVSQFHVANMAASRL 137

[Close]

BLAST of CmoCh01G019800 vs. TAIR 10
Match: AT1G19530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLM+GWDS   DP+ V  RR KSLT+EEI+ FWKTKK+  EE         Q+  ++ 
Sbjct: 1   MGSLMSGWDSRVRDPKSV--RRCKSLTREEIDTFWKTKKKNEEE------EHVQAFSKLV 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
             E   +  +   SV              +   +N+ K +GWWR++ WAFLNEP   EG 
Sbjct: 61  TQEGAQSQAKEKKSV--------------DDLFENQSKSSGWWRKTYWAFLNEPREEEGR 112

Query: 121 GNSYVSQFHVANVA 135
            N+YVSQF VA++A
Sbjct: 121 PNNYVSQFKVAHIA 112

The following BLAST results are available for this feature:

BLAST of CmoCh01G019800 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G019800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHE8	6.5e-74	100.00	uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC1114457...	[more]
A0A6J1J1T2	3.2e-73	99.28	uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065...	[more]
A0A5D3D820	6.8e-55	79.86	Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa ...	[more]
A0A6J1DA26	6.8e-55	81.16	uncharacterized protein LOC111018241 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1S3CST6	6.8e-55	79.86	uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=...	[more]

BLAST of CmoCh01G019800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940046.1	1.3e-73	100.00	uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothet...	[more]
XP_022982140.1	6.7e-73	99.28	uncharacterized protein LOC111481065 [Cucurbita maxima]	[more]
XP_023525160.1	8.7e-73	98.55	uncharacterized protein LOC111788844 [Cucurbita pepo subsp. pepo]	[more]
XP_038898962.1	3.3e-56	82.61	uncharacterized protein LOC120086405 [Benincasa hispida]	[more]
XP_008466545.1	1.4e-54	79.86	PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 put...	[more]

BLAST of CmoCh01G019800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19530.1	1.1e-20	42.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR33872	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	coord: 1..137
None	No IPR available	PANTHER	PTHR33872:SF2	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	coord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G019800.1	CmoCh01G019800.1	mRNA