CmoCh01G019450 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G019450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptiontRNA-processing ribonuclease BN
LocationCmo_Chr01: 13850210 .. 13852988 (+)
RNA-Seq ExpressionCmoCh01G019450
SyntenyCmoCh01G019450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGTTTGAGGACAAGTTGCTCTGCTCTAAAGCCCTAAAAATATGGAGTCGCAATCCGTCTGTCGTAGGGCTTCTCTCGACATTGGTCGGATTACGGGATGGTCGTGCTCGCTTTCGTCAACTGGTTAGTGCTTGTTTCGAATATTAATTTTATGATCGTCCTGTCATTCGGAAGTAACTTTATGGATTTGCTCTTCATTTCTTCTCAACCAATTAGGAAACCGAGTTCGAGAGAGGAGGCAAGGAGTACAGCTTGAATTCTCGCCGAAATGTATGTTTTTAGTTTGGTGCCATTTTTATTCTTGTCTATGTGCGTGTGTATATGATTTGTTCTTTGTGGATCAGCTTGATAGGAGTTAGTATTGGTTGTGAGATTTTTGATATAATGTTTGGCTGGGGATGTGTGGAAGAGGAAGAGAGGGGCGTTGATGTGCGTGGCTGATTCTAACAGGAAGGCTAAATTAGAATCATCTAGAGAGGAAAATCATGTAGTGTATGTTAGTTGATTGAATGGAGTGGAGGCATTTCGTGGGAAATCTGGCTCAATCACATTTCATGGCTTGACTCACCTGTTGGTAGAAGAGGGTAAATTAAAGACCATACGTGCAATTCAACTCAAAGAGGTGGAGCCTCGTTACGGGGTTAGAGGATACTTGACAACTTTCGTTATAGCTCTTAGGAATCACGACTTTCCACCATGGTATGATATTGTCTACTTTGAGCATAAGTTCTCATGATTTTGCTTTTGGTTTTTCGAAAAGGCCTCGTACCAATGGAGATAGTGTTCCCTTGATTATAACCTATGATCATCCTCTAAATTAGTCAATGTGTGACTCCCTCCCAACGATCCTCAACAATAGTTCCATTATTTGCTGTGTATGTAACTTGGCTACTCAACAATAGTTCCATTATTTGCCGTGTATGTAACTTGGCTGATGATTGGCTTGCCTCTGCTTGTTGCAGTGGTTAAGGATATTTAATAATGAATTGTAGTTTACCATCTATATTATATTTGATCGGCAAATATCTTTCATTACGGGTTAGCATAAGGGTTAGCATAAGTATCTTTTCATTTATTACTTTTTTCATATCCTTTTAAGTTATTTGATTATAAATAGAGAACTTTCACACCATTGTATTAGAGCCTCTTCGGGTTACAGTTTAGTAACCCCGATCCTTTATTTTTATTGGCTTCTGAATCCTTTACTCATCTTTTTCTCTACCACCACTACCGGCTTTGACGCAGCAGGGGTAGTCTCCATGGCTGCCGTAGGCTGAGTCGATTGATTACTCTTCGACTCCACCCTTTTGACCTCAAATCACCCTTCACCATACTCTGTACATACAACCTCACCTTCTCCAACACAATCGTTTTCCCCTTAGCCAACATAGTCTCTCTCATTTTCTTCCCAATCAGACCTTCATCCTTCACAAAAACCCTAATCTCAGAATCCTCATATGTGCTCTCATCGGAAATATACAGAATCTCGAGAAGTCTATCGACCTTCTGTAGAGATTTACCCTCGGAATCTGCGCGCCGCACTGGTTTCTTCGCCAACCAAGTTGCTGCCAACCTCCTCACCAAAATCGGCTCCTTCGCCAACTGTGGTGACTCTTCCGGCTTCACCACCATCTTCGGTCTCCACTCCTGGTGGCATGGCTCCCTCTTTGTCCATTGGACTTCACCATCTGCTATGGCTCTGGCCCCACCTATTGCTCCTACGCCGGCCTTCACTCCTGGGAATGGTGGTGCTGTGAATAGAATCGCTGTCCATGGATCTATCATTGTGGCTCTTCACCCACTTCTGATGGTCTCTTTATTAGTAAGTTAAAATATGCTCGAGATATTTTTACTCGTGTTCATTTGCTCGATAGCAAACCAGTCCACAAGGCACAAACCCCACTCCATCTCCGCCCCTCTCTTTCTTCGTCTAAAATACACCTAAAGTCCGTATTCTTAGTTTATGTCACCTTCTTCCTCTCTTGTTCCTCTCTTCTTTATAGTCACCATTGAACCCTCTCTCTCTTCTCCTTCTTCCTCTGGTTTTCCCTTCTACTTCGTGGGTTAGACATATTCTCGTCGGAGCAAGGCAACATCGCAGCTGTGCGACGATCCCCTGCAGTTTTCGAAGGCCAAGAAAATGTTTCTCTATGTCTTCTTCGAACTAGGTTGCTGACATTTTCACAAAAAAATGTTTCTCGATCTCTCTTTGAATTTTTCATATCCAAGTTTCACGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGTGTTAAGGATATTTAGTACTGAATTATAGTTTACCATATATATCATATTTGATCTTTTATTATAGACACATATCTCAGCTTACCATAAGTATCTTTCCGTTTATTACTCTTTTTATATCTTTGTAATTTATTTGATTATAAATAAAGAATTTTCAAACTATTTAGGTGCTTGGTTTTCTCAATAGTGATTACATTTCTGGTTGGAAGTATCGTTCAGTTAGCATGTGAGACCCATCTTGATAGGCGTGGCTCATCTTGTTGCCCACTTGTTCCAATTATTTTGTAGGTATTTCACCTATAGTTATAACTTATAACTCATTCCTCGTTCCTTTCAAAGAGTAAATTAGATATTTTATTAATCATCTTGCAGGTTTATAGAATTTACCACTTGACAAAGCGCATTTTATAGAGAGGCTGATGTTCCAAATGAGAGGGCTTCCCACCACTCCAGACTTGTTGGAAAAAAGTGGAGCTCTTTTTGCTATGATGATAACCTTTAAGTCCTGTGGG

mRNA sequence

GGGAGTTTGAGGACAAGTTGCTCTGCTCTAAAGCCCTAAAAATATGGAGTCGCAATCCGTCTGTCGTAGGGCTTCTCTCGACATTGGTCGGATTACGGGATGGTCGTGCTCGCTTTCGTCAACTGGAGTTAGTATTGGTTGTGAGATTTTTGATATAATGTTTGGCTGGGGATGTGTGGAAGAGGAAGAGAGGGGCGTTGATAATTTACCACTTGACAAAGCGCATTTTATAGAGAGGCTGATGTTCCAAATGAGAGGGCTTCCCACCACTCCAGACTTGTTGGAAAAAAGTGGAGCTCTTTTTGCTATGATGATAACCTTTAAGTCCTGTGGG

Coding sequence (CDS)

ATGGAGTCGCAATCCGTCTGTCGTAGGGCTTCTCTCGACATTGGTCGGATTACGGGATGGTCGTGCTCGCTTTCGTCAACTGGAGTTAGTATTGGTTGTGAGATTTTTGATATAATGTTTGGCTGGGGATGTGTGGAAGAGGAAGAGAGGGGCGTTGATAATTTACCACTTGACAAAGCGCATTTTATAGAGAGGCTGATGTTCCAAATGAGAGGGCTTCCCACCACTCCAGACTTGTTGGAAAAAAGTGGAGCTCTTTTTGCTATGATGATAACCTTTAAGTCCTGTGGG

Protein sequence

MESQSVCRRASLDIGRITGWSCSLSSTGVSIGCEIFDIMFGWGCVEEEERGVDNLPLDKAHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG
Homology
[Close]
BLAST of CmoCh01G019450 vs. ExPASy TrEMBL
Match: A0A6J1CA74 (uncharacterized protein LOC111009450 OS=Momordica charantia OX=3673 GN=LOC111009450 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.9e-09
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+ERL+FQMRGLPTTP+LLEKSGALFAMM+TF+  G
Sbjct: 286 AHFMERLIFQMRGLPTTPELLEKSGALFAMMVTFQVLG 323

[Close]
BLAST of CmoCh01G019450 vs. ExPASy TrEMBL
Match: A0A5D3E8K1 (tRNA-processing ribonuclease BN OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2376G00070 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+E LMFQMRGLPT+P+LLEKSGALFAMMITF+  G
Sbjct: 284 AHFMESLMFQMRGLPTSPELLEKSGALFAMMITFQILG 321

[Close]
BLAST of CmoCh01G019450 vs. ExPASy TrEMBL
Match: A0A5A7UDY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00840 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+E LMFQMRGLPT+P+LLEKSGALFAMMITF+  G
Sbjct: 286 AHFMESLMFQMRGLPTSPELLEKSGALFAMMITFQILG 323

[Close]
BLAST of CmoCh01G019450 vs. ExPASy TrEMBL
Match: A0A1S3CRR4 (uncharacterized protein LOC103503989 OS=Cucumis melo OX=3656 GN=LOC103503989 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+E LMFQMRGLPT+P+LLEKSGALFAMMITF+  G
Sbjct: 284 AHFMESLMFQMRGLPTSPELLEKSGALFAMMITFQILG 321

[Close]
BLAST of CmoCh01G019450 vs. ExPASy TrEMBL
Match: A0A2N9FQF7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20838 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.4e-07
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHFIERLMF ++GLPT+P+LLE+SGALFAM++TF+  G
Sbjct: 258 AHFIERLMFSLKGLPTSPELLERSGALFAMIVTFQVLG 295

[Close]
BLAST of CmoCh01G019450 vs. NCBI nr
Match: XP_038905249.1 (uncharacterized protein LOC120091332 [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+ERLMFQMRGLPTTPDLLEKSGALFAMMITF+  G
Sbjct: 284 AHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLG 321

[Close]
BLAST of CmoCh01G019450 vs. NCBI nr
Match: XP_022138611.1 (uncharacterized protein LOC111009450 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+ERL+FQMRGLPTTP+LLEKSGALFAMM+TF+  G
Sbjct: 286 AHFMERLIFQMRGLPTTPELLEKSGALFAMMVTFQVLG 323

[Close]
BLAST of CmoCh01G019450 vs. NCBI nr
Match: KAA0051699.1 (uncharacterized protein E6C27_scaffold60G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+E LMFQMRGLPT+P+LLEKSGALFAMMITF+  G
Sbjct: 286 AHFMESLMFQMRGLPTSPELLEKSGALFAMMITFQILG 323

[Close]
BLAST of CmoCh01G019450 vs. NCBI nr
Match: XP_008466634.1 (PREDICTED: uncharacterized protein LOC103503989 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+E LMFQMRGLPT+P+LLEKSGALFAMMITF+  G
Sbjct: 284 AHFMESLMFQMRGLPTSPELLEKSGALFAMMITFQILG 321

[Close]
BLAST of CmoCh01G019450 vs. NCBI nr
Match: TYK31605.1 (TRNA-processing ribonuclease BN [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 60  AHFIERLMFQMRGLPTTPDLLEKSGALFAMMITFKSCG 98
           AHF+E LMFQMRGLPT+P+LLEKSGALFAMMITF+  G
Sbjct: 284 AHFMESLMFQMRGLPTSPELLEKSGALFAMMITFQILG 321

The following BLAST results are available for this feature:
BLAST of CmoCh01G019450 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G019450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CA749.9e-0981.58uncharacterized protein LOC111009450 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5D3E8K13.8e-0881.58tRNA-processing ribonuclease BN OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UDY43.8e-0881.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CRR43.8e-0881.58uncharacterized protein LOC103503989 OS=Cucumis melo OX=3656 GN=LOC103503989 PE=... [more]
A0A2N9FQF75.4e-0771.05Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20838 PE=4 SV=1[more]
BLAST of CmoCh01G019450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905249.11.8e-0989.47uncharacterized protein LOC120091332 [Benincasa hispida][more]
XP_022138611.12.0e-0881.58uncharacterized protein LOC111009450 [Momordica charantia][more]
KAA0051699.17.8e-0881.58uncharacterized protein E6C27_scaffold60G00840 [Cucumis melo var. makuwa][more]
XP_008466634.17.8e-0881.58PREDICTED: uncharacterized protein LOC103503989 [Cucumis melo][more]
TYK31605.17.8e-0881.58TRNA-processing ribonuclease BN [Cucumis melo var. makuwa][more]
BLAST of CmoCh01G019450 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019450.1CmoCh01G019450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane