CmoCh01G019230 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G019230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
LocationCmo_Chr01: 13766033 .. 13769915 (-)
RNA-Seq ExpressionCmoCh01G019230
SyntenyCmoCh01G019230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTAGTGGTCGCTTCGTCGTCTGTTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTTCGTGATCCCGCTGCCACCTCAGGCTCCGTACTCTACTGGTCTTGGTTTAAGGTACTAGTTATTGTGAATGTGAGTGTTAAATGTCAATCGTCTGTTCCCCAATAGTGTGCTTAATTTATTTATCTCCGTGTAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCAATAATGGCATTGGCTTCCAACAATGAGGGTACATATATCGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTAAAGTTCAGTTTATTTTCTAAAAGTAAAAAATAACGTGTGTTGTGGCATTGTTTCTGAAATTCCTTGATTGTGAAAAGCTATAGTCGTCCTCTTGTTATATTACTTGGCTGTTGCACATTCTTGGCTTTAGCATAAGCTGGCATGTTGTTGTTGCAGGTTTTGAGCGGCAGACTGCTTATGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTAGTATTCTCTGAAGATGACTCCCTGCTAATTTCTGGCTCTGAAGATGGCTGCGTTAGAGTTTGGTCCCTTCTAAAGTATAAAAAGTTTTATCCTTTAGTCGCACCTGTGTCTATTTAGATTTTATTGTCACTAATTGAAATTTTTCTTACAAATATGTCTATAACAGGGTATTTGATGATGGATGGCAAAGGGAATCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTACCTGTTACTGACATTGTTATTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTTTGGCACTCTAATTGATTTTTCATGTTGATAGTATAATTTTGTGATGATGCGGCTGTATACCTTGGTGAATTAATTAGTTTTATGATCTCTTTGGCTTTTAATTTATTTATGTTTGCTGGTTAAGTACTTGAATTTGCTGTCTATTTGTATTGACTTGGTGAGTATTCCAAATAATCATTATCGTTCCAGATGTGTTCATCTACTAAAATTGGCGTACATGGCACAGTGACAATCAGTGAAGAAAAATTTGAGAAATAAGTTCTCCTATATATTGTTGGTACTAGATATCAATGTTATTTTTTAAAAAAAGATTTCCTGAGACAGTTGAAGAGATTCTATTTGATTAGGGTGTTAAAACTATTGAGTGTAAAACCTTTCTTTTGCAACTCTTCAGAAATTCACAAGGTGAGAACTAGTATCTTACTTATAAAAGAGTTCTTGCTGAAAATGCATAAATGACATCAACTTCTGTGATCTATTCAAGAAGTAATAGGCTGCAGTTAAGTTTCAATTCTAAATGTTCAAGAATTTTTTGAATTGTTTATGATTTATCACCAATGAGTAATGACTACTTTCCTATCTTAAATTCTCTCATATTACATTTTCTTCCGGTGAGTCAAAATTTGAGTAATATGTTGTATGTTAACTTGACTTTTCTAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCGATCATTGATGCAATTGCTTTGGATCCCGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCCAAAAGCCCATCCAGCAGTGATTATGGATTGCATATTCTCGGCTCATTATCAAATCAGAGGTCTATTTTTTTATCTTTGTTTTTTTTGTTATCACGTTAACCATTTTCTTGTCAGCTTTCATTTAGTTATCTTACATTTTACATCAAGGGTTAAGTTTTCCTCTAAATTGTTTTGCTCTTTTTGGTGTCTAGAATGTTATCTTTTGTCCCATAAAAATACAATTGCTTGACTAATGATATAATTATGCAATAAAAAGTTGAGGAATTTCAAGTGGCTATTAGTTCGGTGCACACGTTTGCTTCCTCCCAGGGTTTTCTTTATGCCGGATATCATCTCTGTCTTTATGAATTTGCTGTATTCCCTAACTTATTGTTCTTCTGTTTTTTTAACTAGCAAGTCTGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTATTGATCTCTGGATCTGAGGACGGAGCAATCAAAGTTTGGGATACCAGAACCAATAATATTATTCGTGTTCTCAAACATTCAAAAGGTAGGTACCAAACCATCTAAACGTTATTATTTGCAAAGTATCTATAAAGTTGCGGCTTATTTTCTTTGATGGACCATGTGTGTGAGATCACACTTTGGTTGGAGAGGGGAACAAAATATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGGCTCGTTTTAAAACTTTGAGGGGAAGCTCAGAAGGAAAAACCCAAAAGAGGACAATATCTGCTAGTGTTGGGCTTGGACGGCTTACAATGCTGCATAAATAAATATCTTTATCAAGCTGCTTTATGTATGAGCCGTGCATTAGCGTTTCCCATGAATATGAGGAATAGGCAGTAAATCAACTTTGTCCTTCAACTGTGGCTCAGGGAATGCCTTTCATTGTTTATGCCAGATTGTTATATTATCTGCTTTGTAATTCTAATCGTCAGAGATTGGAGACTGTCTATTAAAATCAAATAAATTATGTTTGGAAGCTTGATAATCTTTTTTGTCTCTTTATTTTTAATCTTTTCTAATTTTATGAAATTCATTTCATAAATTTATTTCCAGGCATATTAATTTATATGGTTTTTTATTGCCCTAGCTAGTGCAGTCATCTCTTGCTTGAGGGTATTCACAACCTTCATTTTTCATTTATTATCTCCATGCAAATACACTGATGTTCCATACTATTATGCAGGTCCTGTAAATAATTTACTTATTGTTCGACAACAGCTCCTCCCGACTTCACAGCTAAATCCAACCTCCCAAGGTTCTTTGAGAAAGCATCGATCACTATTACCTCCTGCCCTTGCAAAATTCGGAAACTCGAAGGACGACGATGAAGACACTGGTGTTATCATTGGTCGATCAGGTCCTCCCATGGAATCCATGGGGTTTTCCCCCATTAGTTCTCATGTGATGGATAATCAAATCACAGAACTTCAGGTGCTTGCTCTCATTTTATCCCCCTTTTCCCGTGGCCCTAAAACTCCATTTTTTTCTTGGTAAATGATATCACATCCTGTCTTTTGTCCTGGCATAGGCATACACATCATTTAGTGATAACCCATATGTCTCTACACAGTTAAAAGTTGTACTAACATGCGGTTTCTCTACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCGTGATTATGGAAAATCCATGCAAATGCAACAGCAGTGGAGAAAACTGTACGACAATTTACATCAATATTGTGTAAATGAGCTTCTGGATGGCGATCAAACTAAAATTTAGAAGGCAATTCTGCTTGAACATTACTATTCTTTTTGTTTTCAATTTTGTTTTGTTCCATCTCATGTTCTACAAATTGTATCATCAAGTTAGGTTAGTATTTGATGGAATTGTTAGGAAGCCATCCTTGATTAATTTTAATTCCCGAACCTTTTTTCTCGGATAAGATCTGTGCATGTTGGCACAAGTACCCTAAATTTATATGAATACTTTTGGTCATGTGGGTATTTGATTCGGGTTGTATGAACAGCACTAGATATGTTATGATTTTTGGGGCAACTTTTTTTTTAGTTGCGCTTATATTCGTAGGAGTTGGGTTCAAGCTTTCCCCATCCCTTCTCATTAATGGACTTATATAAAGGAGCGTGGTTCGTTTA

mRNA sequence

ATGGTGTTAGTGGTCGCTTCGTCGTCTGTTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTTCGTGATCCCGCTGCCACCTCAGGCTCCGTACTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCAATAATGGCATTGGCTTCCAACAATGAGGGTACATATATCGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTGAGCGGCAGACTGCTTATGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTAGTATTCTCTGAAGATGACTCCCTGCTAATTTCTGGCTCTGAAGATGGCTGCGTTAGAGTTTGGTCCCTTCTAAAGGTATTTGATGATGGATGGCAAAGGGAATCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTACCTGTTACTGACATTGTTATTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCGATCATTGATGCAATTGCTTTGGATCCCGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCCAAAAGCCCATCCAGCAGTGATTATGGATTGCATATTCTCGGCTCATTATCAAATCAGAGCAAGTCTGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTATTGATCTCTGGATCTGAGGACGGAGCAATCAAAGTTTGGGATACCAGAACCAATAATATTATTCGTGTTCTCAAACATTCAAAAGGTCCTGTAAATAATTTACTTATTGTTCGACAACAGCTCCTCCCGACTTCACAGCTAAATCCAACCTCCCAAGGTTCTTTGAGAAAGCATCGATCACTATTACCTCCTGCCCTTGCAAAATTCGGAAACTCGAAGGACGACGATGAAGACACTGGTGTTATCATTGGTCGATCAGGTCCTCCCATGGAATCCATGGGGTTTTCCCCCATTAGTTCTCATGTGATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCGTGATTATGGAAAATCCATGCAAATGCAACAGCAGTGGAGAAAACTGTACGACAATTTACATCAATATTGTGTAAATGAGCTTCTGGATGGCGATCAAACTAAAATTTAGAAGGCAATTCTGCTTGAACATTACTATTCTTTTTGTTTTCAATTTTGTTTTGTTCCATCTCATGTTCTACAAATTGTATCATCAAGTTAGGTTAGTATTTGATGGAATTGTTAGGAAGCCATCCTTGATTAATTTTAATTCCCGAACCTTTTTTCTCGGATAAGATCTGTGCATGTTGGCACAAGTACCCTAAATTTATATGAATACTTTTGGTCATGTGGGTATTTGATTCGGGTTGTATGAACAGCACTAGATATGTTATGATTTTTGGGGCAACTTTTTTTTTAGTTGCGCTTATATTCGTAGGAGTTGGGTTCAAGCTTTCCCCATCCCTTCTCATTAATGGACTTATATAAAGGAGCGTGGTTCGTTTA

Coding sequence (CDS)

ATGGTGTTAGTGGTCGCTTCGTCGTCTGTTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTTCGTGATCCCGCTGCCACCTCAGGCTCCGTACTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCAATAATGGCATTGGCTTCCAACAATGAGGGTACATATATCGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTGAGCGGCAGACTGCTTATGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTAGTATTCTCTGAAGATGACTCCCTGCTAATTTCTGGCTCTGAAGATGGCTGCGTTAGAGTTTGGTCCCTTCTAAAGGTATTTGATGATGGATGGCAAAGGGAATCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTACCTGTTACTGACATTGTTATTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCGATCATTGATGCAATTGCTTTGGATCCCGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCCAAAAGCCCATCCAGCAGTGATTATGGATTGCATATTCTCGGCTCATTATCAAATCAGAGCAAGTCTGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTATTGATCTCTGGATCTGAGGACGGAGCAATCAAAGTTTGGGATACCAGAACCAATAATATTATTCGTGTTCTCAAACATTCAAAAGGTCCTGTAAATAATTTACTTATTGTTCGACAACAGCTCCTCCCGACTTCACAGCTAAATCCAACCTCCCAAGGTTCTTTGAGAAAGCATCGATCACTATTACCTCCTGCCCTTGCAAAATTCGGAAACTCGAAGGACGACGATGAAGACACTGGTGTTATCATTGGTCGATCAGGTCCTCCCATGGAATCCATGGGGTTTTCCCCCATTAGTTCTCATGTGATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCGTGATTATGGAAAATCCATGCAAATGCAACAGCAGTGGAGAAAACTGTACGACAATTTACATCAATATTGTGTAAATGAGCTTCTGGATGGCGATCAAACTAAAATTTAG

Protein sequence

MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGSVLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQWRKLYDNLHQYCVNELLDGDQTKI
Homology
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BLAST of CmoCh01G019230 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 4.6e-143
Identity = 255/439 (58.09%), Postives = 324/439 (73.80%), Query Frame = 0 

Query: 2   VLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGSV 61
           + V+ASSS+D GIG WDL TG EQL++K CASPAHGL  VGE+FLA SQL     TSGS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYR 121
            YWSW KPQ EVKS+P EPI ALA+NNEGTY+VGGG SGDIYLWEV +G+LL KWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVI 181
           +VTCLVFS DDSLL+SGS+DG +RVWSL+++FDD  +++   LYEH+F  H + VTDIVI
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNI 301
             A+NA    +S+YG  +LGS+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVLKHS----KGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDD 361
           +R L H+    KGPVNN+ IVR+ ++  S     +Q S +   +L+PP L K+    +D 
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSN---KTQVSWKSRGALIPPPLEKYERPVEDT 362

Query: 362 EDTGVIIGRSGPPMESMGF--SPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQ 421
            D   I+    PP   +    S +S+ ++D Q+ ELQQQGSAAT ME+ERLK +Y +S+Q
Sbjct: 363 MDG--IVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQ 422

Query: 422 MQQQWRKLYDNLHQYCVNE 435
           M +QW+K Y+NL Q  + E
Sbjct: 423 MNEQWQKNYENLLQVVMEE 431

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BLAST of CmoCh01G019230 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.0e-42
Identity = 109/338 (32.25%), Postives = 175/338 (51.78%), Query Frame = 0 

Query: 3   LVVASSSVDSGIGC--WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 62
           LV+++ +      C  W+  TG+  L Y+   +   GL  +G ++L   QL         
Sbjct: 7   LVLSADAAGQVANCTVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLGGQL-----GKNY 66

Query: 63  VLYWS-WFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAH 122
           +  W    + Q++ K     P+  L+++  G Y+V  G +  IYLWEV +G LL   ++H
Sbjct: 67  INVWELQRRDQLQQKIVCPGPVNCLSASPNGLYLV-AGIAESIYLWEVSTGHLLAILNSH 126

Query: 123 YRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDI 182
           Y+ VTCL F++D S +ISG++D  V VW L  V      R  +  Y   ++ H+LP+TD+
Sbjct: 127 YQDVTCLTFTDDSSHIISGAKDSLVLVWGLYSVLQVETSRGPEPRY--VWSRHSLPITDV 186

Query: 183 VIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGK 242
             G GG  A + +SS+D+T K+W +  G LL +++F   I ++A DP E+  + GG DG 
Sbjct: 187 QCGIGGPQARVATSSLDQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGV 246

Query: 243 IYTAALNAKSPSSSDYGLHILGSL--SNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTR 302
           IY   L   +P   +   H    +        VT L+    G++LISGS D  + VWD +
Sbjct: 247 IYQVDLYT-TPEQRERPFHPEQEMVFKGHRNQVTCLSVSLDGSMLISGSHDETVCVWDIQ 306

Query: 303 TNNIIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGS 336
           +   +R + H +GPV N+ I+     P++ L   S+ S
Sbjct: 307 SKQSLRSVPH-RGPVTNVFII---AAPSNMLRAESKPS 331

[Close]
BLAST of CmoCh01G019230 vs. ExPASy Swiss-Prot
Match: Q499N3 (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-41
Identity = 110/347 (31.70%), Postives = 174/347 (50.14%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGC--WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATS 60
           M +VV + S      C  W+LH+GA  L Y+   +   GL  +   +L        AA  
Sbjct: 5   MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLL-------AAQQ 64

Query: 61  GSVLYWSW---FKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMK 120
           G     +W    K Q++ K     P+  L +   G Y++  G +  IYLWEV +G LL+ 
Sbjct: 65  GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVL-AGIAESIYLWEVSTGNLLVI 124

Query: 121 WHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLY--EHSFTGHN 180
              HY+ V+CL F+ D S  +S  +D  V  WSL  V     Q +   +    H ++ H 
Sbjct: 125 LSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVL----QADPSRILAPRHVWSQHT 184

Query: 181 LPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYG 240
           LP+TD+  G+GG  A + ++S+D+T K+W++S G LL +++F   I ++ +D  EH  + 
Sbjct: 185 LPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFC 244

Query: 241 GGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSK----SVTSLAYCSSGNLLISGSEDG 300
           GG DG I+   L ++ P   +       +     K     VT L+  + G++L+SGS D 
Sbjct: 245 GGSDGSIFQVDLCSR-PGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDE 304

Query: 301 AIKVWDTRTNNIIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSL 337
           ++++WD ++   +R +   KGPV N  I    L P S LNP  + SL
Sbjct: 305 SVRLWDVKSKQCVRTVP-LKGPVTNAAIT---LAPPSMLNPEFRPSL 334

[Close]
BLAST of CmoCh01G019230 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.0e-41
Identity = 107/322 (33.23%), Postives = 164/322 (50.93%), Query Frame = 0 

Query: 17  WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGSVLYWSW---FKPQVEV 76
           W+LH+GA  L Y+   +   GL  +   +L  +QL       G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL-------GKNYICAWELQRKDQLQQ 82

Query: 77  KSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLVFSEDDS 136
           K     P+  L ++  G Y++  G S +IYLWEV +G LL+    HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTTSPNGLYVL-AGISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSS 142

Query: 137 LLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISS 196
             ISG +D  V  WSL  V      R       H ++ H LP+TD+  G+GG  A + ++
Sbjct: 143 HFISGGKDCLVLAWSLCSVLQADPSRTPAP--RHVWSRHTLPITDLHCGFGGPLARVATA 202

Query: 197 SVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAAL------NA 256
           S+D+T K+W +S G+LL +++F   I A+ +D  EH  + GG DG I+   L        
Sbjct: 203 SLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQRE 262

Query: 257 KSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKH 316
           KS         +     NQ   VT L+  + G++L+SGS D  +++WD ++   +R +  
Sbjct: 263 KSFQPEQEHGKVFRGHRNQ---VTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVT- 322

Query: 317 SKGPVNNLLIVRQQLLPTSQLN 330
            KGPV N  I+   L P S L+
Sbjct: 323 LKGPVTNACIM---LAPVSMLS 327

[Close]
BLAST of CmoCh01G019230 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 3.9e-41
Identity = 109/329 (33.13%), Postives = 168/329 (51.06%), Query Frame = 0 

Query: 17  WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGSVLYWSW---FKPQVEV 76
           W+LH+GA  L Y+   +   GL  +   +L  +QL       G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL-------GKNYISAWELQRKDQLQQ 82

Query: 77  KSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLVFSEDDS 136
           K     P+  L ++  G Y++  G +  I+LWEV +G LL+    HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTASPNGLYVL-AGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSS 142

Query: 137 LLISGSEDGCVRVWSLLKVFDDGWQR--ESKHLYEHSFTGHNLPVTDIVIGYGGSNAIII 196
             ISG +D  V VWSL  V      R    +H++ H    H LP+TD+  G+GG  A + 
Sbjct: 143 HFISGGKDCLVLVWSLCSVLQADPSRIPAPRHVWSH----HALPITDLHCGFGGPLARVA 202

Query: 197 SSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPS 256
           +SS+D+T K+W +S G+LL +++F   I A+ +D  EH  + GG +G I+   L    P 
Sbjct: 203 TSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDL-FTWPG 262

Query: 257 SSDYGLHILGSLSNQSK----SVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKH 316
             +   H         K     VT L+  + G++L+SGS D  +++WD ++   IR +  
Sbjct: 263 QRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVA- 322

Query: 317 SKGPVNNLLIVRQQLLPTSQLNPTSQGSL 337
            KGPV N  I+   L P S L+   + SL
Sbjct: 323 LKGPVTNAAIL---LAPVSMLSSDFRPSL 334

[Close]
BLAST of CmoCh01G019230 vs. ExPASy TrEMBL
Match: A0A6J1FMG7 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC111446741 PE=4 SV=1)

HSP 1 Score: 902.9 bits (2332), Expect = 5.3e-259
Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTKI 444
           RKLYDNLHQYCVNELLDGDQTKI
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTKI 443

[Close]
BLAST of CmoCh01G019230 vs. ExPASy TrEMBL
Match: A0A6J1IYT8 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 PE=4 SV=1)

HSP 1 Score: 890.6 bits (2300), Expect = 2.7e-255
Identity = 437/443 (98.65%), Postives = 440/443 (99.32%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSSVDSGIGCWDLHTGAEQL YKSCASPAHGLVCVGERFLACSQLRDPAATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCL FSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNNLLIV+ QLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
Sbjct: 301 IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIGRSGPPMESMGFSPISSHVMD+QITELQQQGSAATGMELERLKR+YGKSMQMQQQW
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTKI 444
           RKLYDNLHQYCVNELLDGDQTKI
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTKI 443

[Close]
BLAST of CmoCh01G019230 vs. ExPASy TrEMBL
Match: A0A0A0KZT0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 810.4 bits (2092), Expect = 3.6e-231
Identity = 393/442 (88.91%), Postives = 417/442 (94.34%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVL+VASSS+DSGIGCWDLHTG+EQLRYKSCASP HGLVCVG +FLACSQLRDPAAT+GS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGC+RVWSL+ VFDDGWQRE+KHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAK PSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           +IRV +HSKGPVNN+L+V+QQ LP SQ   TSQGSLRKHR LLPPALAKF NSKD+DE T
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPLLPPALAKFENSKDEDEYT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVII  SGPP ES GFS +SSHVMD+QITELQQQGSAATGMELERLK DYGKS QM Q W
Sbjct: 361 GVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTK 443
           RK+YDNLHQ+CVNELLDG+QTK
Sbjct: 421 RKMYDNLHQFCVNELLDGNQTK 440

[Close]
BLAST of CmoCh01G019230 vs. ExPASy TrEMBL
Match: A0A1S3BU36 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 808.5 bits (2087), Expect = 1.4e-230
Identity = 395/442 (89.37%), Postives = 415/442 (93.89%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVL+VASSS+DSGIGCWDLHTGAEQLRYKSCASP HGLVCVGE+FLACSQLRD AAT+GS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLISGSEDGC+RVWSL+ VFDDGWQRE+KHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAK PSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISG EDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           +IRV +HSKGPVNN+L+V+QQ LP SQ   TSQGSLRKHR +LPPALAKF NSKD+DE T
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPILPPALAKFENSKDEDEYT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVII  SGPP ESM FS +SSHVMDNQITELQQQGSAAT MELERLK DYGKS QM Q W
Sbjct: 361 GVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTK 443
           RK+YDNLHQ+CVNELLDG+QTK
Sbjct: 421 RKMYDNLHQFCVNELLDGNQTK 440

[Close]
BLAST of CmoCh01G019230 vs. ExPASy TrEMBL
Match: A0A6J1DDG0 (protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC111019080 PE=4 SV=1)

HSP 1 Score: 799.3 bits (2063), Expect = 8.3e-228
Identity = 382/441 (86.62%), Postives = 419/441 (95.01%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKSCASP+HGL+CVG++FLACSQLRDPAAT+GS
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPSHGLICVGQQFLACSQLRDPAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           +LYWSWFKPQVEVKSFPAE IM LA+NNEGTYIVGGGFSGDIYLWEVLSGRLL KWH HY
Sbjct: 61  ILYWSWFKPQVEVKSFPAEAIMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHGHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTC+VFSEDDSLLISGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHNLP+TDIV
Sbjct: 121 RAVTCVVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPITDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSN+IIISSSVDRTCKVWSLSKGKLLRNIIFPSI+DAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGSNSIIISSSVDRTCKVWSLSKGKLLRNIIFPSIVDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYC+SGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCASGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNN++IVRQ+++P   +N +SQGSLRKHRSL+PP LAKF NSKD+DEDT
Sbjct: 301 IIRVLKHSKGPVNNIIIVRQRVIPKPLINSSSQGSLRKHRSLVPPPLAKFENSKDEDEDT 360

Query: 361 GVIIGRSGPPMESMGF-SPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQ 420
           G++IG SG   E MGF SP++  VM+NQI +LQ+QG AATGMELER+KRDYG+SMQM QQ
Sbjct: 361 GIVIGVSG---EFMGFSSPLTCDVMENQIAQLQKQGCAATGMELERVKRDYGRSMQMLQQ 420

Query: 421 WRKLYDNLHQYCVNELLDGDQ 441
           WRK+YDNLH++CVNEL+DGDQ
Sbjct: 421 WRKMYDNLHEFCVNELVDGDQ 438

[Close]
BLAST of CmoCh01G019230 vs. NCBI nr
Match: XP_022941447.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 902.9 bits (2332), Expect = 1.1e-258
Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTKI 444
           RKLYDNLHQYCVNELLDGDQTKI
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTKI 443

[Close]
BLAST of CmoCh01G019230 vs. NCBI nr
Match: XP_023521513.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 899.8 bits (2324), Expect = 9.3e-258
Identity = 439/443 (99.10%), Postives = 443/443 (100.00%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYI+GGGFSGDIYLWEV+SGRLLMKWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIIGGGFSGDIYLWEVMSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           IGYGGSNAII+SSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIVSSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIGRSGPP+ESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW
Sbjct: 361 GVIIGRSGPPVESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTKI 444
           RKLYDNLHQYCVNELLDGDQTKI
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTKI 443

[Close]
BLAST of CmoCh01G019230 vs. NCBI nr
Match: XP_022982251.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima])

HSP 1 Score: 890.6 bits (2300), Expect = 5.6e-255
Identity = 437/443 (98.65%), Postives = 440/443 (99.32%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSSVDSGIGCWDLHTGAEQL YKSCASPAHGLVCVGERFLACSQLRDPAATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCL FSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNNLLIV+ QLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
Sbjct: 301 IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIGRSGPPMESMGFSPISSHVMD+QITELQQQGSAATGMELERLKR+YGKSMQMQQQW
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTKI 444
           RKLYDNLHQYCVNELLDGDQTKI
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTKI 443

[Close]
BLAST of CmoCh01G019230 vs. NCBI nr
Match: KAG7037821.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 859.4 bits (2219), Expect = 1.4e-245
Identity = 424/426 (99.53%), Postives = 424/426 (99.53%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKLYDN 427
           RKL  N
Sbjct: 421 RKLAFN 426

[Close]
BLAST of CmoCh01G019230 vs. NCBI nr
Match: XP_038898957.1 (protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida])

HSP 1 Score: 818.5 bits (2113), Expect = 2.7e-233
Identity = 398/442 (90.05%), Postives = 418/442 (94.57%), Query Frame = 0 

Query: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAAT+GS
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGG SGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNDEGTYIVGGGLSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLISGSEDGC+RVW+LL VFDDGWQRE+KHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIID IALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDVIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300
           YTAALNAK PS+ DYGLHILGSLSNQSKSVT+LAYCSSGNLLISGSEDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKCPSTGDYGLHILGSLSNQSKSVTALAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360
           +IRV +HSKGPVNN+L+VRQQ+LP SQ   TSQG LRKHRSLLPPALAKF NSKD+DEDT
Sbjct: 301 VIRVFRHSKGPVNNILLVRQQVLPKSQ--STSQGFLRKHRSLLPPALAKFENSKDEDEDT 360

Query: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420
           GVIIG +G P ESMGF  +SSHVMDNQITELQQQGSAA GMELERLK D GKSMQM Q W
Sbjct: 361 GVIIGPTGLPKESMGFPALSSHVMDNQITELQQQGSAANGMELERLKYDCGKSMQMLQHW 420

Query: 421 RKLYDNLHQYCVNELLDGDQTK 443
           RK+YDNLHQ+CVNELLDGDQTK
Sbjct: 421 RKMYDNLHQFCVNELLDGDQTK 440

[Close]
BLAST of CmoCh01G019230 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 509.2 bits (1310), Expect = 3.3e-144
Identity = 255/439 (58.09%), Postives = 324/439 (73.80%), Query Frame = 0 

Query: 2   VLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGSV 61
           + V+ASSS+D GIG WDL TG EQL++K CASPAHGL  VGE+FLA SQL     TSGS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYR 121
            YWSW KPQ EVKS+P EPI ALA+NNEGTY+VGGG SGDIYLWEV +G+LL KWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVI 181
           +VTCLVFS DDSLL+SGS+DG +RVWSL+++FDD  +++   LYEH+F  H + VTDIVI
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNI 301
             A+NA    +S+YG  +LGS+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVLKHS----KGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDD 361
           +R L H+    KGPVNN+ IVR+ ++  S     +Q S +   +L+PP L K+    +D 
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSN---KTQVSWKSRGALIPPPLEKYERPVEDT 362

Query: 362 EDTGVIIGRSGPPMESMGF--SPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQ 421
            D   I+    PP   +    S +S+ ++D Q+ ELQQQGSAAT ME+ERLK +Y +S+Q
Sbjct: 363 MDG--IVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQ 422

Query: 422 MQQQWRKLYDNLHQYCVNE 435
           M +QW+K Y+NL Q  + E
Sbjct: 423 MNEQWQKNYENLLQVVMEE 431

[Close]
BLAST of CmoCh01G019230 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-15
Identity = 55/213 (25.82%), Postives = 98/213 (46.01%), Query Frame = 0 

Query: 87  NNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRV 146
           N +   IV G F   + +W+V +G+ L    AH   VT + F+ D SL++S S DG  R+
Sbjct: 122 NPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 181

Query: 147 WSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSK 206
           W      D G    + H  +      N PV+   + +  +   I+  ++D T ++W++S 
Sbjct: 182 W------DSG----TGHCVKTLIDDENPPVS--FVRFSPNGKFILVGTLDNTLRLWNISS 241

Query: 207 GKLLRNIIFP-----SIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILG 266
            K L+           I  A ++  G+ +   G  D  ++   LN+K          +L 
Sbjct: 242 AKFLKTYTGHVNAQYCISSAFSVTNGKRI-VSGSEDNCVHMWELNSKK---------LLQ 301

Query: 267 SLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVW 295
            L   +++V ++A   + NL+ SGS D  +++W
Sbjct: 302 KLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312

[Close]
BLAST of CmoCh01G019230 vs. TAIR 10
Match: AT5G50230.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-14
Identity = 53/221 (23.98%), Postives = 93/221 (42.08%), Query Frame = 0 

Query: 88  NEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVW 147
           N GT   GG     + +W+  SG L+   +     +  +  + D+  +I+ +    + VW
Sbjct: 236 NSGTLFTGGQ-DRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVW 295

Query: 148 SLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKG 207
            +           S     H+ TGH   V  + +    S   ++S++ DRT K+W L KG
Sbjct: 296 DV-----------SSGRVRHTLTGHTDKVCAVDVSKFSSRH-VVSAAYDRTIKLWDLHKG 355

Query: 208 KLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQS 267
                ++F S  +AI L       + G  DG +    +             +L  ++  S
Sbjct: 356 YCTNTVLFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGK---------LLSEVAGHS 415

Query: 268 KSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKHS 309
            +VTS++   +GN +++   D    V+DTRT  I   L+ S
Sbjct: 416 SAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRAS 434

[Close]
BLAST of CmoCh01G019230 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-12
Identity = 55/234 (23.50%), Postives = 104/234 (44.44%), Query Frame = 0 

Query: 81  IMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMK-WHAHYRAVTCLVFSEDDSLLISGS 140
           I  LA +++  Y         + +W+  S    +K    H   V C+ F+   +L++SGS
Sbjct: 88  ISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGS 147

Query: 141 EDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTC 200
            D  +R+W +         +  K +       H++P++ +     GS  +I+S+S D +C
Sbjct: 148 FDETIRIWEV---------KTGKCV--RMIKAHSMPISSVHFNRDGS--LIVSASHDGSC 207

Query: 201 KVWSLSKGKLLRNII---FPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYG 260
           K+W   +G  L+ +I    P++            F     +GK    A    +   S+Y 
Sbjct: 208 KIWDAKEGTCLKTLIDDKSPAV-----------SFAKFSPNGKFILVATLDSTLKLSNYA 267

Query: 261 ----LHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLK 307
               L +    +N+   +TS    ++G  ++SGSED  + +WD +  NI++ L+
Sbjct: 268 TGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLE 297

[Close]
BLAST of CmoCh01G019230 vs. TAIR 10
Match: AT2G47410.1 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-11
Identity = 62/222 (27.93%), Postives = 96/222 (43.24%), Query Frame = 0 

Query: 113 LMKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGH 172
           + K   H  AV C +F      +I+GS+D  V++WS+              L   S  GH
Sbjct: 229 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM-----------ETALCLASCRGH 288

Query: 173 NLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKG---KLLRNIIFPSIIDAIALDPGEH 232
              +TD+ +    +NA++ S+S D   +VW L  G    +LR       + AIA  P + 
Sbjct: 289 EGDITDLAV--SSNNALVASASNDFVIRVWRLPDGMPISVLRG--HTGAVTAIAFSPRQA 348

Query: 233 VFY---GGGRDG--KIYTAALN-----AKSPSSSDYGLHILGSLSN--QSKSVTSLAYCS 292
             Y       DG  +I+ A  +        PS SD      GS SN  QS  +   AY +
Sbjct: 349 SVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDAN---TGSTSNASQSHQILCCAYNA 408

Query: 293 SGNLLISGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVR 320
           +G + ++GS D   +VW     N    L  ++ P + L ++R
Sbjct: 409 NGTIFVTGSSDSNARVWSASKPN----LDDAEQPTHELDVLR 428

The following BLAST results are available for this feature:
BLAST of CmoCh01G019230 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3B44.6e-14358.09Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1... [more]
A0A1L8HX766.0e-4232.25WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1[more]
Q499N31.8e-4131.70WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1[more]
Q3SZD43.0e-4133.23WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1[more]
Q9BV383.9e-4133.13WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2[more]
BLAST of CmoCh01G019230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMG75.3e-259100.00protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC11144674... [more]
A0A6J1IYT82.7e-25598.65protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 ... [more]
A0A0A0KZT03.6e-23188.91WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G... [more]
A0A1S3BU361.4e-23089.37protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4... [more]
A0A6J1DDG08.3e-22886.62protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of CmoCh01G019230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941447.11.1e-258100.00protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein R... [more]
XP_023521513.19.3e-25899.10protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo][more]
XP_022982251.15.6e-25598.65protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima][more]
KAG7037821.11.4e-24599.53Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argy... [more]
XP_038898957.12.7e-23390.05protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida][more]
BLAST of CmoCh01G019230 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G49180.13.3e-14458.09Transducin/WD40 repeat-like superfamily protein [more]
AT3G49660.11.7e-1525.82Transducin/WD40 repeat-like superfamily protein [more]
AT5G50230.17.1e-1423.98Transducin/WD40 repeat-like superfamily protein [more]
AT4G02730.11.0e-1223.50Transducin/WD40 repeat-like superfamily protein [more]
AT2G47410.11.1e-1127.93WD40/YVTN repeat-like-containing domain;Bromodomain [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 190..204
score: 36.27
coord: 135..149
score: 39.79
coord: 282..296
score: 40.29
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 206..244
e-value: 350.0
score: 1.0
coord: 162..203
e-value: 0.002
score: 27.4
coord: 256..295
e-value: 4.0E-7
score: 39.7
coord: 109..148
e-value: 7.4E-10
score: 48.8
coord: 69..106
e-value: 1.4
score: 16.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 167..203
e-value: 0.0012
score: 19.6
coord: 112..148
e-value: 7.3E-7
score: 29.8
coord: 260..295
e-value: 1.4E-6
score: 28.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 169..212
score: 9.706414
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 263..304
score: 16.022453
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 116..149
score: 13.950525
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 215..320
e-value: 7.5E-16
score: 60.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..214
e-value: 2.4E-32
score: 114.0
NoneNo IPR availablePANTHERPTHR18763WD-REPEAT PROTEIN 18coord: 2..435
NoneNo IPR availablePANTHERPTHR18763:SF0WD REPEAT-CONTAINING PROTEIN 18coord: 2..435
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 263..298
score: 12.235586
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 116..149
score: 11.550137
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 282..296
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 5..317

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019230.1CmoCh01G019230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030174 regulation of DNA-dependent DNA replication initiation
biological_process GO:0006364 rRNA processing
cellular_component GO:0005656 nuclear pre-replicative complex
cellular_component GO:0097344 Rix1 complex
molecular_function GO:0005515 protein binding