CmoCh01G019030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G019030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein TIC 22, chloroplastic-like
Location	Cmo_Chr01: 13691143 .. 13694118 (-)
RNA-Seq Expression	CmoCh01G019030
Synteny	CmoCh01G019030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCGTATGGCTTTCTGATTCGGTCGCTGCGACGAAAATTTTGGAATCGAATTCGGCTTTTCAGTGTCGTACGATTTGGGAGCTGTCGTTTGAGATAGCTTAAATGCTGCTCAGCTGTCAGTTCAAATTGGTCACGCTATTTCATTCAATATAATCTTATTAACAATAGCCTTTGATCTTAGACAGATTAAATATGGCACGGGTTTATGTAAACCTTGTACGGTACAAGGATGCTAACTTGTGGGTTCCCTTAATGGATTGCACCATCGACCAACTTTGATCTTCTTAGAAGGGTTTAAGTATGACCGTGTCTGTTAGAGCTCTGAAGATGATAAATGGTCAATGAAGTTCACGTCATGTACTAAGGCACTGATGAACTATCACCTCATTATGCATAAGTTCCGCCCAATCCAGGAGCAGTTTTGATGCAGTTTAAAATTGACTCATCATTGTATGTTTTCATTTATAGCTCAAAGCCTCGGATTCCAGGAGCAGTTTTGATGGAGTTCCTGTTTTTCAGGTACATTGGTGCACTCAATTAAATGGTTTTAACACAAAGGCAAAATTCTTCATTGTGAAAACTCCAGAATGATCCATAATTGAATTATTGGACACTTTCCAAATTTCTAATTCAGGGCATAAACAGCTCTCAATCTTGATTGGCATTGAATCTCACGTCATGTATAATTGGGTTAACATTTCTCATAATAACGATTTTCTGTTTTACAGTCTGACCTTCTGATTGTGAAAAAGAAAAACAAGCGTTATTGTCCTATATACTTTACTAAGGTTCGTATCATTTCTGAGGAACTCGTGGATCATTGATGCGTCTAATGTGCTTCTAAAAATGTGGTTTTATGATCTCACCATCCTCTAGTACTTATCTTTAATTGGAAAATAGGAAGATATAGAGAAGGAACTGTCGAAGGTCTCAAAGGCATCAAGGGGATTAGGAACTTCTCAACATATCATGGTATCGTTTCCATCTTTATTCTCTGGTGTGTTTTATTCATTGAATGGGTTGAATTTCGTGCCTTGATCAGTGCTCCCTGTAAAACATGGTGTGTGTTATATTTTCTCTTCTTCTTTGCATCTGATACGATATTGCTTATTACATTTTAGAAGCGACCTGTTCGTTCCTGTATTAAATGAAAGATTGATTTTGTTAATTTTCCGCTGTAGTCTACAGTTTTCATAAAGTGGTTTTTTGGCACAAGAAATTCGTATTCAAGCAGCTGTGGAAGTGAAGATGAAAATGTTTTAAGCTTTAAATATAAGCAGAATGTCTGAAATTATTATCCTGCAAGTGAAAATTGTGGACGATCACTGCGTGTTTCTTTCTTGTGAAAAATATTTGTTAAGTTAATCCACGATTATATTGTTTATTCCCTTCACTCAACCAAAACTTTTATGTAACAGGTCGGTAGTTTGGAAGATGTTCTTAAGAAAATGGAGGTAAGGTTTCTTGATCTCAAGTAGCAGCATCTTTTAGAAAATAGAAATTATAGTTAGTTTTCTTGATCAATTATAGTTGAATGAGAAGAACTGAGCCTGGGAAGATCTAATTTTCATTCCACCTGGCAAAAGCCACTCTCAACTCATTCAAGAAGTGGGCAAAGCATGACATAGGCTGTGGACTCAGCCAACAGACCACGACGGAGCATGGAGAGCTGATTCAGCTAACTGAGGTTAGAAAACATTGGAATTCTATAATGATTGACCTCATAGGAGAGCAATAATATATTGTTATATTTATTTAGAGAATAATTGTTTAGGTAGCTGAAGATGTGTAGCGATGACCTTGATTTTTTCCTCATTTTTATACGCTCCTAGTTGGATTTATATAATCCATTTGCTTAATCCATATCTGTTGCTGTGTTATAATTAGAATAAGCTTTAAGCAGAACAGAGTTCTGAGTGGATGAAATTGTTCACCCACTTTAGCAACAACGTCTTCACTCACCACGCATTCTTCAACCACGCTATTCGTTCAAGGGAACAAAAGTTTGATACTCTCACAACCCTGTAGTCATATCTTCATGTTGAGATGAACGAAAGGGATCAATTCTGTGAGTACCATCTTTTCTTCAATGTCATGGATGTTTTTCATCCAATTTTAGAAACGCATTTATATATGTTTTAGAACAATTTATTTTGTTTGCTCATGAGCTAAGTTATCCAAAATTATTATTACTATTATTATGTTCTTCCAAATGGCCTTTGTATCTGAAATCCTTTCTCCCTTTTGAGTGATCATGAAGTCATCCAGATGAAATAACTCGAGAAACTAATTAATGGGTGGTCAATTTTCACTTCCTCTTGCTCTTCAAAATCTATTTCAGTAGGCATTTCATACCTCAACCTAAAAAAAGTTATTAGTAGCTGTGACAATTATTTTTTAAAGTAATCATTCAATGTAAAATTATTGAACACCTTTTCTCTCCTCTTTATAAAAGCTATCACTATATTATATAAGCTACATCAAATAATGTTCCTTGCCTTTAACAAAGAGACCTTTAAACTCCATGAAACTGCAGGGATTGGCTGTTTCGGTGCAAGAATCCGGACCATTATGTCTCCTATAGATCAGAGGGAGTTAAAAGCTTAGAGGAATGCCTTTATATATATTTTTTTTTGGTTGAATTATTAAGTTTAGTCTATTAAGTTTGAGTCTAATTTGATCATGAACTAAAGTCACTAGACGCATGATTATGTCCTCTGCCTCTGTTGAAATGCTAGTGTAAGAACCAGGGAAGAAGGTGGTGATGAATAATGATGAGAAAAGGGATAATTGGTGTCGGAATTTGGGCATTATTTTGAAATGCAGAGTAGTGTAGTTGAGGGACCAATCTGATTGCTGCCTCTGCACTCTTAGTACAAAAGCTTTGTTCAAACTTCCATTTTGTCTGTTTTATTGTATTATTTGTGTATACCATGTTTACTTTTGAAGGGGAAGGAATAAAAATAATCC

mRNA sequence

ATGGGATTCGTATGGCTTTCTGATTCGGTCGCTGCGACGAAAATTTTGGAATCGAATTCGGCTTTTCAGTGTCACAGATTAAATATGGCACGGGTTTATGTAAACCTTGTACGGTACAAGGATGCTAACTTGTGGCTCAAAGCCTCGGATTCCAGGAGCAGTTTTGATGGAGTTCCTGTTTTTCAGTCTGACCTTCTGATTGTGAAAAAGAAAAACAAGCGTTATTGTCCTATATACTTTACTAAGGAAGATATAGAGAAGGAACTGTCGAAGGTCTCAAAGGCATCAAGGGGATTAGGAACTTCTCAACATATCATGGTCGGTAGTTTGGAAGATGTTCTTAAGAAAATGGAGTTGAATGAGAAGAACTGAGCCTGGGAAGATCTAATTTTCATTCCACCTGGCAAAAGCCACTCTCAACTCATTCAAGAAGTGGGCAAAGCATGACATAGGCTGTGGACTCAGCCAACAGACCACGACGGAGCATGGAGAGCTGATTCAGCTAACTGAGAATAAGCTTTAAGCAGAACAGAGTTCTGAGTGGATGAAATTGTTCACCCACTTTAGCAACAACGTCTTCACTCACCACGCATTCTTCAACCACGCTATTCGTTCAAGGGAACAAAAGTTTGATACTCTCACAACCCTGTAGTCATATCTTCATGTTGAGATGAACGAAAGGGATCAATTCTGGATTGGCTGTTTCGGTGCAAGAATCCGGACCATTATGTCTCCTATAGATCAGAGGGAGTTAAAAGCTTAGAGGAATGCCTTTATATATATTTTTTTTTGGTTGAATTATTAAGTTTAGTCTATTAAGTTTGAGTCTAATTTGATCATGAACTAAAGTCACTAGACGCATGATTATGTCCTCTGCCTCTGTTGAAATGCTAGTGTAAGAACCAGGGAAGAAGGTGGTGATGAATAATGATGAGAAAAGGGATAATTGGTGTCGGAATTTGGGCATTATTTTGAAATGCAGAGTAGTGTAGTTGAGGGACCAATCTGATTGCTGCCTCTGCACTCTTAGTACAAAAGCTTTGTTCAAACTTCCATTTTGTCTGTTTTATTGTATTATTTGTGTATACCATGTTTACTTTTGAAGGGGAAGGAATAAAAATAATCC

Coding sequence (CDS)

ATGGGATTCGTATGGCTTTCTGATTCGGTCGCTGCGACGAAAATTTTGGAATCGAATTCGGCTTTTCAGTGTCACAGATTAAATATGGCACGGGTTTATGTAAACCTTGTACGGTACAAGGATGCTAACTTGTGGCTCAAAGCCTCGGATTCCAGGAGCAGTTTTGATGGAGTTCCTGTTTTTCAGTCTGACCTTCTGATTGTGAAAAAGAAAAACAAGCGTTATTGTCCTATATACTTTACTAAGGAAGATATAGAGAAGGAACTGTCGAAGGTCTCAAAGGCATCAAGGGGATTAGGAACTTCTCAACATATCATGGTCGGTAGTTTGGAAGATGTTCTTAAGAAAATGGAGTTGAATGAGAAGAACTGA

Protein sequence

MGFVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

Homology

[Close]

BLAST of CmoCh01G019030 vs. ExPASy Swiss-Prot
Match: Q9ZST9 (Protein TIC 22, chloroplastic OS=Pisum sativum OX=3888 GN=TIC22 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-28
Identity = 64/87 (73.56%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L L+A+ +R SFDGVPVFQSDLL+VKKKNKRYCP+YF+KED+E ELSKVS++S
Sbjct: 144 VQIKNA-LELRAA-NRGSFDGVPVFQSDLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSS 203

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           +G+G SQHIMVGS EDVLKKMEL+EK+
Sbjct: 204 KGVGVSQHIMVGSFEDVLKKMELSEKS 228

[Close]

BLAST of CmoCh01G019030 vs. ExPASy Swiss-Prot
Match: Q9SZB2 (Protein TIC 22, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-25
Identity = 57/87 (65.52%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           ++ K+A L LK+S +++ FDGVPVFQS+LL+V+KKN+RYCP+YF+KEDIE+ELSK ++AS
Sbjct: 161 IQIKNA-LELKSSGNKNGFDGVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRAS 220

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RG    Q IMVGSLEDVL+KME++EKN
Sbjct: 221 RG---DQQIMVGSLEDVLRKMEMSEKN 243

[Close]

BLAST of CmoCh01G019030 vs. ExPASy Swiss-Prot
Match: F4J469 (Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22L PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 55  FDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTS---QHIMVGSLE 114
           F GVPVFQS  LI++ +N  Y P++F KED+EK L + S     L  +     I V   E
Sbjct: 221 FHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFE 280

Query: 115 DVLKKM 118
           D++K M
Sbjct: 281 DIVKGM 286

[Close]

BLAST of CmoCh01G019030 vs. ExPASy TrEMBL
Match: A0A6J1J433 (protein TIC 22, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481156 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 88/133 (66.17%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 3   FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASD 62
           FV +SD      I        C R+  A  ++  VR +   L             LKASD
Sbjct: 101 FVLISDPNGVKSI-----GLLCFRMEDAETFLAQVRSRKRELRSNAKVVPLTLDQLKASD 160

Query: 63  SRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL 122
           S+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL
Sbjct: 161 SKSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL 220

Query: 123 EDVLKKMELNEKN 124
           EDVLKKMELNEKN
Sbjct: 221 EDVLKKMELNEKN 228

[Close]

BLAST of CmoCh01G019030 vs. ExPASy TrEMBL
Match: A0A6J1J4F6 (protein TIC 22, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481156 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L LKASDS+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS
Sbjct: 168 VQIKNA-LELKASDSKSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 227

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 228 RGLGTSQHIMVGSLEDVLKKMELNEKN 253

[Close]

BLAST of CmoCh01G019030 vs. ExPASy TrEMBL
Match: A0A6J1FFN8 (protein TIC 22, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443609 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L LKASD++SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKEL KVSKAS
Sbjct: 168 VQIKNA-LELKASDTQSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELLKVSKAS 227

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 228 RGLGTSQHIMVGSLEDVLKKMELNEKN 253

[Close]

BLAST of CmoCh01G019030 vs. ExPASy TrEMBL
Match: A0A6J1CN57 (protein TIC 22, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012654 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.3e-33
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L LKASD+RSSFDGVPVFQSDLLIVKKKNKRYCPIYF KEDIE+EL KVSKAS
Sbjct: 168 VQIKNA-LELKASDTRSSFDGVPVFQSDLLIVKKKNKRYCPIYFAKEDIERELLKVSKAS 227

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 228 RGLGTSQHIMVGSLEDVLKKMELNEKN 253

[Close]

BLAST of CmoCh01G019030 vs. ExPASy TrEMBL
Match: A0A6J1IIY6 (protein TIC 22, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476704 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.5e-33
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L LKASD++SSFDGVPVFQSDLLIVKK NKRYCPIYFTKEDIEKEL KVSKAS
Sbjct: 168 VQIKNA-LELKASDTQSSFDGVPVFQSDLLIVKKNNKRYCPIYFTKEDIEKELLKVSKAS 227

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 228 RGLGTSQHIMVGSLEDVLKKMELNEKN 253

[Close]

BLAST of CmoCh01G019030 vs. NCBI nr
Match: KAG6608478.1 (Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.2 bits (409), Expect = 2.9e-36
Identity = 86/95 (90.53%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 29  MARVYVNLVRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKE 88
           MARVYVNL         LKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKE
Sbjct: 1   MARVYVNL---------LKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKE 60

Query: 89  LSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN 124
           LSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 61  LSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN 86

[Close]

BLAST of CmoCh01G019030 vs. NCBI nr
Match: XP_023525964.1 (protein TIC 22, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 89/133 (66.92%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 3   FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASD 62
           FV +SD      I        C R+  A  ++  VR +   L             LKASD
Sbjct: 101 FVLISDPNGVKSI-----GLLCFRMEDAETFLAQVRSRKRELRSNAKVVPLTLDQLKASD 160

Query: 63  SRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL 122
           SRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL
Sbjct: 161 SRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL 220

Query: 123 EDVLKKMELNEKN 124
           EDVLKKMELNEKN
Sbjct: 221 EDVLKKMELNEKN 228

[Close]

BLAST of CmoCh01G019030 vs. NCBI nr
Match: XP_023525963.1 (protein TIC 22, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L LKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS
Sbjct: 168 VQIKNA-LELKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 227

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 228 RGLGTSQHIMVGSLEDVLKKMELNEKN 253

[Close]

BLAST of CmoCh01G019030 vs. NCBI nr
Match: XP_022982279.1 (protein TIC 22, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-34
Identity = 88/133 (66.17%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 3   FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASD 62
           FV +SD      I        C R+  A  ++  VR +   L             LKASD
Sbjct: 101 FVLISDPNGVKSI-----GLLCFRMEDAETFLAQVRSRKRELRSNAKVVPLTLDQLKASD 160

Query: 63  SRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL 122
           S+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL
Sbjct: 161 SKSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL 220

Query: 123 EDVLKKMELNEKN 124
           EDVLKKMELNEKN
Sbjct: 221 EDVLKKMELNEKN 228

[Close]

BLAST of CmoCh01G019030 vs. NCBI nr
Match: XP_022982278.1 (protein TIC 22, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 3.6e-34
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           V+ K+A L LKASDS+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS
Sbjct: 168 VQIKNA-LELKASDSKSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 227

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RGLGTSQHIMVGSLEDVLKKMELNEKN
Sbjct: 228 RGLGTSQHIMVGSLEDVLKKMELNEKN 253

[Close]

BLAST of CmoCh01G019030 vs. TAIR 10
Match: AT4G33350.1 (Tic22-like family protein )

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-26
Identity = 57/87 (65.52%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           ++ K+A L LK+S +++ FDGVPVFQS+LL+V+KKN+RYCP+YF+KEDIE+ELSK ++AS
Sbjct: 161 IQIKNA-LELKSSGNKNGFDGVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRAS 220

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
           RG    Q IMVGSLEDVL+KME++EKN
Sbjct: 221 RG---DQQIMVGSLEDVLRKMEMSEKN 243

[Close]

BLAST of CmoCh01G019030 vs. TAIR 10
Match: AT4G33350.2 (Tic22-like family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 37  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKAS 96
           ++ K+A L LK+S +++ FDGVPVFQS+LL+V+KKN+RYCP                   
Sbjct: 161 IQIKNA-LELKSSGNKNGFDGVPVFQSELLVVRKKNRRYCP------------------- 217

Query: 97  RGLGTSQHIMVGSLEDVLKKMELNEKN 124
                     VGSLEDVL+KME++EKN
Sbjct: 221 ----------VGSLEDVLRKMEMSEKN 217

[Close]

BLAST of CmoCh01G019030 vs. TAIR 10
Match: AT3G23710.1 (Tic22-like family protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 55  FDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTS---QHIMVGSLE 114
           F GVPVFQS  LI++ +N  Y P++F KED+EK L + S     L  +     I V   E
Sbjct: 221 FHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFE 280

Query: 115 DVLKKM 118
           D++K M
Sbjct: 281 DIVKGM 286

The following BLAST results are available for this feature:

BLAST of CmoCh01G019030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZST9	1.8e-28	73.56	Protein TIC 22, chloroplastic OS=Pisum sativum OX=3888 GN=TIC22 PE=1 SV=1	[more]
Q9SZB2	3.2e-25	65.52	Protein TIC 22, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22 PE=1 SV=1	[more]
F4J469	3.3e-06	42.42	Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22L PE=...	[more]

BLAST of CmoCh01G019030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J433	1.3e-34	66.17	protein TIC 22, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1J4F6	1.7e-34	93.10	protein TIC 22, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FFN8	2.5e-33	90.80	protein TIC 22, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443609...	[more]
A0A6J1CN57	7.3e-33	89.66	protein TIC 22, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012654 PE=...	[more]
A0A6J1IIY6	9.5e-33	89.66	protein TIC 22, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476704 P...	[more]

BLAST of CmoCh01G019030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608478.1	2.9e-36	90.53	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, partial [Cucurbita argyros...	[more]
XP_023525964.1	1.2e-34	66.92	protein TIC 22, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023525963.1	1.6e-34	94.25	protein TIC 22, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022982279.1	2.7e-34	66.17	protein TIC 22, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_022982278.1	3.6e-34	93.10	protein TIC 22, chloroplastic isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh01G019030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33350.1	2.2e-26	65.52	Tic22-like family protein	[more]
AT4G33350.2	3.2e-12	44.83	Tic22-like family protein	[more]
AT3G23710.1	2.3e-07	42.42	Tic22-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007378	Tic22-like	PFAM	PF04278	Tic22	coord: 43..121 e-value: 1.5E-32 score: 112.8
IPR007378	Tic22-like	PANTHER	PTHR33926	PROTEIN TIC 22, CHLOROPLASTIC	coord: 46..123
None	No IPR available	GENE3D	3.40.1350.100		coord: 37..122 e-value: 1.4E-6 score: 30.1
None	No IPR available	PANTHER	PTHR33926:SF4	PROTEIN TIC 22, CHLOROPLASTIC	coord: 46..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G019030.1	CmoCh01G019030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009507	chloroplast