CmoCh01G017660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G017660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 13094556 .. 13094772 (+)
RNA-Seq ExpressionCmoCh01G017660
SyntenyCmoCh01G017660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGGAAAGGAAGGAAGAAACAAAAATGATGAAAACCTAGCCGCCTCACGCTTATCCTCCGTCTTCCCGCCTGATCCTCTTCTTCTTAATAGTTCAGTCGCTCCGCCGTGCTCTCCGTCGCCCTCGGTGCCGCTTCCGTCCCTCCTTTACTCTCGCCTATCCTACTGCGCTGTTCTGCATCATTTCGTTTTCGATCTTCTACTCTATTGGTTTTAG

mRNA sequence

AATGGGAAAGGAAGGAAGAAACAAAAATGATGAAAACCTAGCCGCCTCACGCTTATCCTCCGTCTTCCCGCCTGATCCTCTTCTTCTTAATAGTTCAGTCGCTCCGCCGTGCTCTCCGTCGCCCTCGGTGCCGCTTCCGTCCCTCCTTTACTCTCGCCTATCCTACTGCGCTGTTCTGCATCATTTCGTTTTCGATCTTCTACTCTATTGGTTTTAG

Coding sequence (CDS)

ATGGGAAAGGAAGGAAGAAACAAAAATGATGAAAACCTAGCCGCCTCACGCTTATCCTCCGTCTTCCCGCCTGATCCTCTTCTTCTTAATAGTTCAGTCGCTCCGCCGTGCTCTCCGTCGCCCTCGGTGCCGCTTCCGTCCCTCCTTTACTCTCGCCTATCCTACTGCGCTGTTCTGCATCATTTCGTTTTCGATCTTCTACTCTATTGGTTTTAG

Protein sequence

MGKEGRNKNDENLAASRLSSVFPPDPLLLNSSVAPPCSPSPSVPLPSLLYSRLSYCAVLHHFVFDLLLYWF
Homology
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BLAST of CmoCh01G017660 vs. NCBI nr
Match: KAG6608385.1 (hypothetical protein SDJN03_01727, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MGKEGRNKNDENLAASRLSSVFPPDPLLLNSSVAPPCSPSPSVPLPSLLYSRLSYCAVLH 60
          MGKEGRNKNDENLAAS LSSVFPPDPLLLNSSVAPPCSPSPSVPLPSLLYSRLSYCA++ 
Sbjct: 1  MGKEGRNKNDENLAASCLSSVFPPDPLLLNSSVAPPCSPSPSVPLPSLLYSRLSYCALID 60

Query: 61 HFV 64
          H +
Sbjct: 61 HII 63

The following BLAST results are available for this feature:
BLAST of CmoCh01G017660 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G017660 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G017660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608385.12.4e-2290.48hypothetical protein SDJN03_01727, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G017660 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G017660.1CmoCh01G017660.1mRNA