CmoCh01G017310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G017310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GPIPIRRH peptide like
Location	Cmo_Chr01: 12937861 .. 12938221 (-)
RNA-Seq Expression	CmoCh01G017310
Synteny	CmoCh01G017310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTACCTTCACTTCCGAGCTGGCAAATCGATTGAATATGAATTTTTCGTTTGCAGATCAGGGAATGTCATAGTTGCGATCGATCTCTATCAGTAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATCTCGTTCCCTTTATCGTTGTTATTCTAATTGCTGCTCATGTTCTCGCGCTGGTACTTCAATCTCAACTTCAACCTCTTTTTTTCCCCCATTCTATTAGAAGTCGCTTCTAGTGCGACATTCATCATTTGATCTGGGAGTTTTGTTTTAGGGCTACTGGATTTACAGATTAGCGACGGATAACAGAGCTCAAAGGAGGAAAGCACATTCAAGAACAGTTTAA

mRNA sequence

CTTTACCTTCACTTCCGAGCTGGCAAATCGATTGAATATGAATTTTTCGTTTGCAGATCAGGGAATGTCATAGTTGCGATCGATCTCTATCAGTAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATCTCGTTCCCTTTATCGTTGTTATTCTAATTGCTGCTCATGTTCTCGCGCTGGGCTACTGGATTTACAGATTAGCGACGGATAACAGAGCTCAAAGGAGGAAAGCACATTCAAGAACAGTTTAA

Coding sequence (CDS)

ATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATCTCGTTCCCTTTATCGTTGTTATTCTAATTGCTGCTCATGTTCTCGCGCTGGGCTACTGGATTTACAGATTAGCGACGGATAACAGAGCTCAAAGGAGGAAAGCACATTCAAGAACAGTTTAA

Protein sequence

MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAHSRTV

Homology

[Close]

BLAST of CmoCh01G017310 vs. ExPASy TrEMBL
Match: A0A6J1F6U7 (uncharacterized protein LOC111442654 OS=Cucurbita moschata OX=3662 GN=LOC111442654 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MANQQQVDSRPWILD+VPFIVVILIAAHVLAL YWIYRLATDNR QRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of CmoCh01G017310 vs. ExPASy TrEMBL
Match: A0A6J1IQM9 (uncharacterized protein LOC111477303 OS=Cucurbita maxima OX=3661 GN=LOC111477303 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.5e-17
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MANQQQVDSRPWILD+VPFIV ILIAAHVLAL YWIYRLAT+NR QRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVAILIAAHVLALVYWIYRLATENRPQRRKAH 51

[Close]

BLAST of CmoCh01G017310 vs. ExPASy TrEMBL
Match: A0A1S3BWH4 (uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1   MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
           MANQQ VDSRPWILD+VPFIVVILI AHVLAL YWIYRL TDNR QRRKAH
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 144

[Close]

BLAST of CmoCh01G017310 vs. ExPASy TrEMBL
Match: A0A0A0L5I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-15
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MAN+  VDSRPWILD+VPFIVVILI AHVLAL YWIYRL TDNR QRRKAH
Sbjct: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 51

[Close]

BLAST of CmoCh01G017310 vs. ExPASy TrEMBL
Match: A0A2R6Q2F1 (GPIPIRRH peptide like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22411 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MAN QQ+ +RPWIL+ VP +V+ LIAAHV AL YWIYRLAT+ + QRRK H
Sbjct: 1  MANPQQISNRPWILEAVPLVVIFLIAAHVAALAYWIYRLATEKQPQRRKKH 51

[Close]

BLAST of CmoCh01G017310 vs. NCBI nr
Match: KAG7037665.1 (hypothetical protein SDJN02_01295, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAHSRTV 56
           MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAHSRTV
Sbjct: 63  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAHSRTV 117

[Close]

BLAST of CmoCh01G017310 vs. NCBI nr
Match: XP_022935881.1 (uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935883.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935884.1 uncharacterized protein LOC111442654 [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MANQQQVDSRPWILD+VPFIVVILIAAHVLAL YWIYRLATDNR QRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of CmoCh01G017310 vs. NCBI nr
Match: XP_023535177.1 (uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535179.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MANQQQVDSRPWILD VPFIVVILIAAHVLAL YWIYRLATDNR QRRKAH
Sbjct: 1  MANQQQVDSRPWILDAVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of CmoCh01G017310 vs. NCBI nr
Match: XP_022977153.1 (uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977154.1 uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977155.1 uncharacterized protein LOC111477303 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
          MANQQQVDSRPWILD+VPFIV ILIAAHVLAL YWIYRLAT+NR QRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVAILIAAHVLALVYWIYRLATENRPQRRKAH 51

[Close]

BLAST of CmoCh01G017310 vs. NCBI nr
Match: XP_008453078.1 (PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 7.5e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1   MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 52
           MANQQ VDSRPWILD+VPFIVVILI AHVLAL YWIYRL TDNR QRRKAH
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 144

[Close]

BLAST of CmoCh01G017310 vs. TAIR 10
Match: AT5G10745.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-12
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRK 50
          MA +Q +  RPW LDLVP +VV+L AAHV+ALGYWIYRLATD RAQ ++
Sbjct: 1  MAKEQHL--RPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQR 47

[Close]

BLAST of CmoCh01G017310 vs. TAIR 10
Match: AT5G24980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10745.1); Has 32 Blast hits to 32 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 4.4e-06
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 14 LDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRK 50
          +DLVP +VV L A HV+AL YWIYRLA+D   QR+K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

The following BLAST results are available for this feature:

BLAST of CmoCh01G017310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6U7	1.1e-17	94.12	uncharacterized protein LOC111442654 OS=Cucurbita moschata OX=3662 GN=LOC1114426...	[more]
A0A6J1IQM9	9.5e-17	90.20	uncharacterized protein LOC111477303 OS=Cucurbita maxima OX=3661 GN=LOC111477303...	[more]
A0A1S3BWH4	3.6e-16	88.24	uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=...	[more]
A0A0A0L5I3	4.0e-15	84.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1	[more]
A0A2R6Q2F1	2.7e-11	66.67	GPIPIRRH peptide like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]

BLAST of CmoCh01G017310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037665.1	2.0e-21	100.00	hypothetical protein SDJN02_01295, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022935881.1	2.3e-17	94.12	uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 unchar...	[more]
XP_023535177.1	4.0e-17	94.12	uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178....	[more]
XP_022977153.1	2.0e-16	90.20	uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977154.1 uncharac...	[more]
XP_008453078.1	7.5e-16	88.24	PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo]	[more]

BLAST of CmoCh01G017310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10745.1	3.1e-12	67.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G24980.1	4.4e-06	63.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755	PROTEIN, PUTATIVE-RELATED	coord: 1..51
None	No IPR available	PANTHER	PTHR35755:SF3	EXPRESSED PROTEIN	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G017310.1	CmoCh01G017310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane