CmoCh01G016680 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G016680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description39S ribosomal protein L41-A, mitochondrial-like
LocationCmo_Chr01: 12616153 .. 12619563 (-)
RNA-Seq ExpressionCmoCh01G016680
SyntenyCmoCh01G016680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTGGGGCTGATTTTGGGACTAGCAAGATCAATGAGGAGGAAGCGCACATCATCTTTGGACATTCTTTCGTCAAAACGAGCTCCACGAGATTACTACAAGGGAAAAAATTGCAAACCTACTGGTTTTCATACGCGCAAAGGTGTGGATAGACTTCCTCTTGCACTTGTATTGATTCTCTTATATTTTTAGGTTTTATGTTTATATCTTTATGAAAACGTTCGATGATTTAAGTATGATGTTTAGTTGATTTCACTGTAAAAAAGTTATTTATCTTTTGGTGCTACACTAATTCAGCATGACGAGTTTGAGTTAGTGCCGTTAAGATCCAGTTCTATACTAAATTAGCGACCGTGTTAGGAAGAACAAGTGCTTCTAGAGATGTGATGTGATTGTTAGGTTGCTTCCAATTTATTTTTAATTGAACAATATTTGGGGTAGAGATTCCAACCTCTTACCTCTCGGTCTATATACCGATTGCTGCTAAACTCATTTTAGCAGCGAGTGAGTTCTAATTCTAGATTTTAGTCTTTGAATGGTTATGGAAACTTCTACTAACTTCTACTGACTTCGGTCGAGAATAAGAAAAGAAATGAGATATCAGATTTGAAGTCTGTTTATAGGTTTCAAATTTGTACTTAAAAACCTAACAATTTCTTTCAGGTGGATACGTTGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGGTATTTTTTTCCTCTTCGTTGTTTAATGTAAAATTTAGAAATGGTTATTTCTCCCTTCCCAACTCCATCTCTTTACCCCTAGTTTCATAACCTTTGTTTTTTGAAAATTATACTCGCATTTTCAACAAATTTTTGACGTAATTTTCATCTTTGCTAAAGAAACATTCAAATTCTTAACCGAATTCAAAAAACAAAACAAGTTTTTAAAAACTAATTTTTTTTAGATTTTTAGAACTTGTTTTTGTTTTTAGAATGCGACTAAGAGTTCCTAATGATGCTTGTGGAGAAAGCAGATATAAGGAACTTCTGTCTGCTGAATAAACTTTTTTGGGATTGTGATAGAGCAATAATAGCTTGCATCTTGATACCTTTGAAGCTTTGATCCTCCATTTAGTGATTCTGTATAATAAAACTTGCATCAATTTTAAAACAGGCAAGATGAACGCAATATCAATTTTCATGCTGAATTCTGGTCTGTCAACTACCATTATCATATTTAGATGTATATATTCGTTGGAAAGGTCAAAGTTCAAAATTATGTCATTGATTGATAATAGTTCTTGAACTATTAGTAAAAAACCAAATCCCACTCTTGATCCAATTCATCGGTATGTGTTTGTCAGTCACCTGCATAGTTTGATGTTCTCTTTTGCTGTATGGATTTCCGGGGTCGGGGGATGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATGTCTACTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACTGGACGATGTGCCAACCTTCTCGCTGTTCCCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGTGGATTTGGGGGTGGTCCCACATCGATCAGAGGAAGGAAAGAGTGTCAGCGAGGACGCTAGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATGTCTACTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACTGGACGATGTGCCAACCTTCTCGCTGTTCCCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGTGGATTTGGGGGTGGTCCCACATCGATCAGAGGAAGGAAAGAGTGTCAGCGAGGACGCTAGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATGTCTACTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACTGGACGATGTGCCAACCTTCTCGCTGTTCCCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGTGGATTTGGGGGTGGTCCCACATCGATCAGAGGAAGGAAAGAGTGTCAGCGAGGACGCTAGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTAGATCTGGGTCGTTACAGGGGAGGCTTGGCTTGACTTGGAACTCGTAGTTGCATGAATTATTTTCCCGAAATTTCTTTGCACTTCACCATGTAGGATCCTTTGGTTGAATGCATTGCTTGGAGCTTTCTTTAGTTACACTATTCCATGCTATTGATGATTTGAAACTTGGTTATTTTAATGCTTTAGGTTATTTAGTACTATTTCCTTTATTGTTAGGATTAACATTCCAAGTTACCTTTTCTTGTGGATCAACGTGTACCTCAAACTTTCATTCACTTGTTTATTCTATCTCCTTTGTTCTTTTAATATAGGAACTTAAATTTCTTGTTTCGTGTTTAAAGAAAACACCATAAACTAAAACTTTCTTTTGTGTCAAGTTGACTTCCTAAGTGGATAAGACACTGATTACCGTTTTTAAATTCGATGGTTTAATCTCCATCCCTTCAATTGTTGGAAGTCAATGTAATGTTGAGTGACTTGTTCTTTGTTTGCAGCTCAAGCCATATGTATCTCAATGTCACATAGAAGCTAAGACTAGTGAAGCCGGTGAATCAACTAAATCATAAGCTAAGAGTTACGTGGTCTTTTCAGTCACGTCATGTTTATCGTAGACGATTAGGTCCAAATTGAGGCGATAAAACTTAGAGGTTTCGTTCACTCGAGATTGAGGGAAATGATGTATAAAGCCCTGGCTCATTTGAGTAGAAGAAAGCAGGCTTGTCCTGCTTCAAATTCTTGTTTTGGTTGGCTTTTTCTTCCAAGATATTCTTGAAATGTCAAGAGAAGACAACATTGTTGATCTTGACGGATGCAACTGCATAA

mRNA sequence

ATGGCGTTGGGGCTGATTTTGGGACTAGCAAGATCAATGAGGAGGAAGCGCACATCATCTTTGGACATTCTTTCGTCAAAACGAGCTCCACGAGATTACTACAAGGGAAAAAATTGCAAACCTACTGGTTTTCATACGCGCAAAGGTGGATACGTTGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGATATTCTTGAAATGTCAAGAGAAGACAACATTGTTGATCTTGACGGATGCAACTGCATAA

Coding sequence (CDS)

ATGGCGTTGGGGCTGATTTTGGGACTAGCAAGATCAATGAGGAGGAAGCGCACATCATCTTTGGACATTCTTTCGTCAAAACGAGCTCCACGAGATTACTACAAGGGAAAAAATTGCAAACCTACTGGTTTTCATACGCGCAAAGGTGGATACGTTGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGATATTCTTGAAATGTCAAGAGAAGACAACATTGTTGATCTTGACGGATGCAACTGCATAA

Protein sequence

MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKIFLKCQEKTTLLILTDATA
Homology
[Close]
BLAST of CmoCh01G016680 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-05
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0 

Query: 3  LGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  +AR + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLISKIARGLVRGADRMAE-CTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 60

Query: 63 VPDLTDFKI 72
          VPDLT FK+
Sbjct: 61 VPDLTGFKL 68

[Close]
BLAST of CmoCh01G016680 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-05
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 3  LGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  +AR + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLITKIARGLVRGADRMAE-CTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 60

Query: 63 VPDLTDFKI 72
          VPDLT FK+
Sbjct: 61 VPDLTGFKL 68

[Close]
BLAST of CmoCh01G016680 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-05
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKI 72
          +SKR PR + K +  K TG +T    +V + E +P +VVPDLT FK+
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKL 68

[Close]
BLAST of CmoCh01G016680 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-05
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKI 72
          +SKR PR + K +  K TGF+T +  +V + E +P +VVPDLT FK+
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNR-KFVQIKEMVPEFVVPDLTGFKL 67

[Close]
BLAST of CmoCh01G016680 vs. ExPASy TrEMBL
Match: A0A6J1J3V5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481090 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 61 YVVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. ExPASy TrEMBL
Match: A0A6J1FQT8 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446078 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 61 YVVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGL R+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          Y+VPDLTDFK+
Sbjct: 61 YIVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. ExPASy TrEMBL
Match: B9RJQ0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 69/85 (81.18%), Postives = 74/85 (87.06%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+ R+ RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YVVPDLTDFKIF-----LKCQEKTT 81
          YVVPDLTDFK+      LK   +TT
Sbjct: 61 YVVPDLTDFKVIFLYPSLKNYRRTT 85

[Close]
BLAST of CmoCh01G016680 vs. ExPASy TrEMBL
Match: A0A803LF52 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.3e-30
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLARSMRRKRTSSLDILSSKRAPR+YYKGKNCKPTGFHTRKGGYVVV EKLPN
Sbjct: 4  MALGLILGLARSMRRKRTSSLDILSSKRAPRNYYKGKNCKPTGFHTRKGGYVVVQEKLPN 63

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 64 YVVPDLTDFKL 74

[Close]
BLAST of CmoCh01G016680 vs. NCBI nr
Match: XP_022940505.1 (39S ribosomal protein L41-A, mitochondrial-like [Cucurbita moschata] >XP_023524435.1 39S ribosomal protein L41-A, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 61 YVVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. NCBI nr
Match: XP_022982189.1 (39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 61 YVVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. NCBI nr
Match: KAG6608261.1 (39S ribosomal protein L41-A, mitochondrial-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 61 YVVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. NCBI nr
Match: XP_015571444.1 (39S ribosomal protein L41-A, mitochondrial-like [Ricinus communis] >XP_015571445.1 39S ribosomal protein L41-A, mitochondrial-like [Ricinus communis])

HSP 1 Score: 143.3 bits (360), Expect = 1.0e-30
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+ R+ RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YVVPDLTDFKIFLKCQEKTTLLILTDATA 90
          YVVPDLTDFK+ L   +  T +  T+A+A
Sbjct: 61 YVVPDLTDFKLKLYVSQCATQIKTTEASA 89

[Close]
BLAST of CmoCh01G016680 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-30
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGL R+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKI 72
          YVVPDLTDFK+
Sbjct: 61 YVVPDLTDFKL 71

[Close]
BLAST of CmoCh01G016680 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-28
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 4  GLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+ RS RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFKI 72
          PDLT FK+
Sbjct: 66 PDLTGFKL 73

[Close]
BLAST of CmoCh01G016680 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-28
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 4  GLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+ RS RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFKI 72
          PDLT FK+
Sbjct: 66 PDLTGFKL 73

[Close]
BLAST of CmoCh01G016680 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-26
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1   MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
           M LGL+ G+ R+ RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPN
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 134

Query: 61  YVVPDLTDFKI 72
           YVVPDLT FK+
Sbjct: 135 YVVPDLTGFKL 144

The following BLAST results are available for this feature:
BLAST of CmoCh01G016680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6DJI41.5e-0540.5839S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a... [more]
Q6INF32.6e-0540.5839S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b... [more]
Q9CQN74.5e-0544.6839S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1... [more]
Q5BJX14.5e-0546.8139S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41... [more]
BLAST of CmoCh01G016680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J3V52.9e-3198.5939S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FQT82.9e-3198.5939S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1CNE92.5e-3094.3739S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC... [more]
B9RJQ07.1e-3081.18Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1[more]
A0A803LF529.3e-3095.77Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
BLAST of CmoCh01G016680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940505.16.0e-3198.5939S ribosomal protein L41-A, mitochondrial-like [Cucurbita moschata] >XP_0235244... [more]
XP_022982189.16.0e-3198.5939S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima][more]
KAG6608261.16.0e-3198.5939S ribosomal protein L41-A, mitochondrial-like protein, partial [Cucurbita argy... [more]
XP_015571444.11.0e-3078.6539S ribosomal protein L41-A, mitochondrial-like [Ricinus communis] >XP_015571445... [more]
XP_038897038.13.9e-3095.7739S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida][more]
BLAST of CmoCh01G016680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G39800.11.3e-2882.35Mitochondrial ribosomal protein L27 [more]
AT5G40080.11.7e-2882.35Mitochondrial ribosomal protein L27 [more]
AT4G09012.16.2e-2677.46Mitochondrial ribosomal protein L27 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019189Ribosomal protein L27/L41, mitochondrialPFAMPF09809MRP-L27coord: 24..71
e-value: 3.1E-12
score: 46.3
IPR019189Ribosomal protein L27/L41, mitochondrialPANTHERPTHR21338MITOCHONDRIAL RIBOSOMAL PROTEIN L41coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G016680.1CmoCh01G016680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome