
CmoCh01G016660 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGATCTACAAGTATGAACACAATTAAATGCTAAAAATTGAATAATTATATTGATAAACATTTGATTTATTATTATGAAAAATTATTAAATAACACTCCTCTACTTCTTAATTATAAATTATATGTAATTTAATTAGGTTAAGGTCTTAATTATAAATTATATGTAATTTAATTAGGTTAAGGTCGTAAATAATAGTTTCATTAGTTTAGTTATATATATTTTTTTAATGTGATTCAAAACTTTCATTAAAAAATATATAAATATAAGCGATTTAAATCTTATTTTCGCCTACATATATTTATCTATTTATTGAGTAAGATTTTTGATCAAATATATATAATATTTAAAAAATAAAAATTATCTAATGAACTTAGTTTTTTTTATTTTTTATTAATGATGAAGATTCTATTTATTTATATGTAACTTTTAATATATTATAATATCGTATTTATTTCTACTACAATGTATAAAAAAAAAATTGTATACATATATAATAACGATTGCAATTGTTTAAAAAAAATTGTTTGATGGTGGGCGTGTTTTAACGTGTTTTAAAATTTTCAAATCTAAACCACTTCCAATATTTTAATAGTCATTTTATTTTTTAAAATTATTATTTGAAACAATTTTGATCAAATGAAAATAATTTTTTCGGTAGAAAAATATATATTTTTTTAAGGAAAACTTTGGATTTAAAAAAATAATAGTAATATATATATATATTAATATATATATATATATATATATATATATATATATATATATATTAATTATTTAATTATTTAAGCTATTTTTGCATGAATATTTGCGTAAGAAAAGTCTAAAAGGGCATGAGCACCGATGCTTCCTTTTTTATGCAAATTGCAAAGAAATTGCCTTTTTATATATTTATAAACAAAGATGATTATTATAAGAAAATAATAATTACTTTAATTATTTAATCATTTTTAAACTTTCAATTCTTTTATAATAAATTTTTTAATTTAGGTTCTCCATCAAAACAATTTAAAAAAAAAATTAATTAATATATTAGTTATAGTTTAATAAAATTAATTTTTTAAAATAAAAGTTAAGACACTAAATTTATAATTTAAAAATTCGCCAATAAAATTTTATTCGAGAGCCCAATTTTTTCTTTTGTAATTAAATGTTCATTTAAAAAAATAAATAACTGTGCATGAGTAAAAAAAAATATTAATTTAACGAATTTGGTAAATTTTATGAAATTCTCGAAATTTTGCGATTCAATATTATTTATTTATTTATTATTATTATTATTTTTTGTACTTTTCTCTTTTAAGTAAACTGCTTGTGCTTACTGCTTAGGGCTCACCGATCTCCTGCAACTGTTCTCTGAATCCAATCGCAGCTCTCTCTTTGATCGTCCCTCGCCTTCAATTTCGTTCACGGCTCTCAATTTCATCGAGGTTCGTTCCTAATAATATGTTTGTTTTTAGGATTTGCTTTGCTGATTGAATGTTAGTTTTGGATTTGCTATCTTTCTCCGTCTCACGAATGATTCGAAGTGAGCAATGATGCAACAAATCTCTCTCTCGTGTTCGTTCCATTTACATTATGAAACCATATCTTCAATTGCGAACTTGTTTTTTTTAGAGAGAATGAATTTCTGTACGATTGATAAACTCTGCACTGCAACTCGTTGTTGGCACACGATTTTCTTTGAAATTCCACACTTGGTTGAAATCAAAAGGGGAAGAAAATTTGTTTTGATTGTTACGTTGTTATGTTCTTTGATAATGACATGATATACATACAAGAAGATTACTCTTGTTAACTTAATATGTGATTTGATAATTGGGGTTTTAGGGTTTTACGCTCGGAGGTGGAGAGATGGACGGTAGCGGAAATCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGACAATGAGTGGGGTGGTCGCGACTCTCGTCGTAAAGTTGAACTATTGTGCTCTGATATTTTCACATGGTTTACTCAGAACAAAGGTGATTTTGCTCCTCCCACTTGAATAATATTGGTACTATCTACATGCACTGTTTAACTTTGCAAACAATTAAAATACTTTGTTTTACTATAAACATAAAAAAGAAATCCATTAAACGACGAGATCATTGTCTTATAAAGCTCACTGAGGCGTGCGCCTTGGCATGGCCCCTGCGCCTTGCTTCAAAGAAGCAACGTTCCCTTGATGAAGCGTGCTTGAGGTGTTGCTCCTCAAGCCTAATTCTTACCTTTAAGGGCTATAACAGATATAGTGCTTTTGTGTGCCTTGGGCTGTAAAGAACACTGGGTGAGATTATTTGTATGATTTCTTATTCACATCACAACGTTTTGTCTTTGATGTTCAGTTTGGTTAATTGATGATCTGAATTTTCTTCCTTGAAGAGATTCATTTAGTTCAAATTATTTTCAACTTTTCTAGATGATAGTTGATTTGTAGTGGAACTTGATACCATGAAAGCATAACGTTTTTGTCGTTTCTCATTTCAATACTTCATATTGCTTTTTCTATCTGAAAAAGTTACAATTTTTACCTTGCAGAGACACTATATATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTATATTTTATACCGCTCTCGATCCTTGTTTGTCTTTGAATAAAGCCCTCTTTTTCAGAACTAAGGTTAATAGCATACCGTTATTTTAAGACAGTTAATACAAATATTTGTTTGAACATTGTTGTTGAAATTTATTCTCTTAATCAAATAAATTTATTGTATATTGAGTTTAGTTGTTTACTAGTGGCTAACTATTCTCGATGAATGGCTTTTCTACCTGATTTGATTCTGGATGGTTTTCAATGTGACTTGTGAAACTTGAGTTCTGTTAGAGATATTTTGAAAATTTTGCTTCCACGTCTTAGAGTCTCGTTGCGTGATGCTTTTGGTTGGAATAGTTCGATATCCTATTAAACTTTTAGCTATTTGTTATGGCTAACTTCAGAAGATAGATGCTTGGAGGACGGTGGTGATGGTATAAATAACAACCTAGTGGAACACAATGTAGTTCGTTAGTTTTCGAATCTAATAACCTTTTACATCTAATCTCGAAGTGAATTTATTTTCTTTGTAGTCATTTTCTATGTTCTGTAGGAGTTGACTGGAAAAGCACTTAAAAAGTTCATAATTCTAATAGATCTGTCTAGTCACACTTTATATCTGCTCCACATTTACCTTGTTGCTCTATCTCTTTTGTTAGAATACTTGGTTGAAGCCGAAAAAATGAGATACCGAATACAAACAGAATTCGAGTATTTACTCTTATTAATGGATTTTTGTAATCTCATATTTAAAATCATCTCTGAGAAGTAAAATATGTTACTATGACGTAGCTCATTCGAGATTTGAGTTATTTACTCTAAATAATGTTTTCTCCCTAATGGAGCAGGTAGCTGAAAAATTGATTTTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGTAATGTGAACTTTTGTCCTAACCAGTCGGTCGGTTCTTTCGTGGCTCGTTATTCAATAGTGTGATTTTGGTAGTGTTTGTTATTCCTTGAGTCTACATTGTCATAGCTTATGGTGAAAAAACTTGCAATTTTCAGAGAATCTTTCATTCATTGTACAAAAAAAAAAAAAACAAAGATTTGGCATTATCATCTAATCTTGGCATTGATTAATTTTAAGGCTATGAGTGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGGTGGAAATGGAGGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAGCCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAGTCCCAACCTCTCTCAAATTAATCCATTTTACTGCCCACTACCCATCAATTTTGTTTGGTGTGAAGATATATATATATAACATATTAGAATTCAGCTTGTGTTTTTGGAGATATCACAGGAGTATGCCATTGTTTTCGATTATCGTTTTGTTGATTACTTCTATACGTTCATCGAGTTTGGTAGTTAGATCGAGTAGCTGCATTCTTTAGTAACGTCCCGACACAGGGTTGACTTTATTAGAAGAACAAAAGGATTTTAGTCGGTAGATTGATGCCCATTTGAATTTTGGGTTCTTTCTTTTATTATAG ATGAGATCTACAAGGCTCACCGATCTCCTGCAACTGTTCTCTGAATCCAATCGCAGCTCTCTCTTTGATCGTCCCTCGCCTTCAATTTCGTTCACGGCTCTCAATTTCATCGAGGGTTTTACGCTCGGAGGTGGAGAGATGGACGGTAGCGGAAATCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGACAATGAGTGGGGTGGTCGCGACTCTCGTCGTAAAGTTGAACTATTGTGCTCTGATATTTTCACATGGTTTACTCAGAACAAAGAGACACTATATATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAAATTGATTTTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGCTATGAGTGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGGTGGAAATGGAGGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAGCCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAGTCCCAACCTCTCTCAAATTAATCCATTTTACTGCCCACTACCCATCAATTTTGTTTGGTGTGAAGATATATATATATAACATATTAGAATTCAGCTTGTGTTTTTGGAGATATCACAGGAGTATGCCATTGTTTTCGATTATCGTTTTGTTGATTACTTCTATACGTTCATCGAGTTTGGTAGTTAGATCGAGTAGCTGCATTCTTTAGTAACGTCCCGACACAGGGTTGACTTTATTAGAAGAACAAAAGGATTTTAGTCGGTAGATTGATGCCCATTTGAATTTTGGGTTCTTTCTTTTATTATAG ATGAGATCTACAAGGCTCACCGATCTCCTGCAACTGTTCTCTGAATCCAATCGCAGCTCTCTCTTTGATCGTCCCTCGCCTTCAATTTCGTTCACGGCTCTCAATTTCATCGAGGGTTTTACGCTCGGAGGTGGAGAGATGGACGGTAGCGGAAATCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGACAATGAGTGGGGTGGTCGCGACTCTCGTCGTAAAGTTGAACTATTGTGCTCTGATATTTTCACATGGTTTACTCAGAACAAAGAGACACTATATATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAAATTGATTTTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGCTATGAGTGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGGTGGAAATGGAGGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAGCCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAG MRSTRLTDLLQLFSESNRSSLFDRPSPSISFTALNFIEGFTLGGGEMDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN Homology
BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.3e-11 Identity = 54/188 (28.72%), Postives = 96/188 (51.06%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2) HSP 1 Score: 57.0 bits (136), Expect = 3.5e-07 Identity = 41/161 (25.47%), Postives = 81/161 (50.31%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.0e-07 Identity = 52/187 (27.81%), Postives = 89/187 (47.59%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06 Identity = 46/186 (24.73%), Postives = 87/186 (46.77%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05 Identity = 47/186 (25.27%), Postives = 87/186 (46.77%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 8.2e-108 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 2.6e-98 Identity = 193/206 (93.69%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 1.7e-76 Identity = 164/204 (80.39%), Postives = 174/204 (85.29%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 3.7e-76 Identity = 163/205 (79.51%), Postives = 174/205 (84.88%), Query Frame = 0
BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 8.3e-76 Identity = 156/203 (76.85%), Postives = 173/203 (85.22%), Query Frame = 0
BLAST of CmoCh01G016660 vs. NCBI nr
Match: KAG6608259.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127 Identity = 243/252 (96.43%), Postives = 246/252 (97.62%), Query Frame = 0
BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_022940503.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]) HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_023524387.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 371.7 bits (953), Expect = 4.9e-99 Identity = 196/204 (96.08%), Postives = 197/204 (96.57%), Query Frame = 0
BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]) HSP 1 Score: 368.2 bits (944), Expect = 5.5e-98 Identity = 193/206 (93.69%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]) HSP 1 Score: 295.8 bits (756), Expect = 3.4e-76 Identity = 164/204 (80.39%), Postives = 174/204 (85.29%), Query Frame = 0
BLAST of CmoCh01G016660 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region ) HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29 Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 0
BLAST of CmoCh01G016660 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region ) HSP 1 Score: 88.2 bits (217), Expect = 1.0e-17 Identity = 44/100 (44.00%), Postives = 69/100 (69.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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