CmoCh01G016660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G016660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	pre-rRNA-processing protein TSR2 homolog
Location	Cmo_Chr01: 12608558 .. 12612934 (-)
RNA-Seq Expression	CmoCh01G016660
Synteny	CmoCh01G016660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCTACAAGTATGAACACAATTAAATGCTAAAAATTGAATAATTATATTGATAAACATTTGATTTATTATTATGAAAAATTATTAAATAACACTCCTCTACTTCTTAATTATAAATTATATGTAATTTAATTAGGTTAAGGTCTTAATTATAAATTATATGTAATTTAATTAGGTTAAGGTCGTAAATAATAGTTTCATTAGTTTAGTTATATATATTTTTTTAATGTGATTCAAAACTTTCATTAAAAAATATATAAATATAAGCGATTTAAATCTTATTTTCGCCTACATATATTTATCTATTTATTGAGTAAGATTTTTGATCAAATATATATAATATTTAAAAAATAAAAATTATCTAATGAACTTAGTTTTTTTTATTTTTTATTAATGATGAAGATTCTATTTATTTATATGTAACTTTTAATATATTATAATATCGTATTTATTTCTACTACAATGTATAAAAAAAAAATTGTATACATATATAATAACGATTGCAATTGTTTAAAAAAAATTGTTTGATGGTGGGCGTGTTTTAACGTGTTTTAAAATTTTCAAATCTAAACCACTTCCAATATTTTAATAGTCATTTTATTTTTTAAAATTATTATTTGAAACAATTTTGATCAAATGAAAATAATTTTTTCGGTAGAAAAATATATATTTTTTTAAGGAAAACTTTGGATTTAAAAAAATAATAGTAATATATATATATATTAATATATATATATATATATATATATATATATATATATATATATTAATTATTTAATTATTTAAGCTATTTTTGCATGAATATTTGCGTAAGAAAAGTCTAAAAGGGCATGAGCACCGATGCTTCCTTTTTTATGCAAATTGCAAAGAAATTGCCTTTTTATATATTTATAAACAAAGATGATTATTATAAGAAAATAATAATTACTTTAATTATTTAATCATTTTTAAACTTTCAATTCTTTTATAATAAATTTTTTAATTTAGGTTCTCCATCAAAACAATTTAAAAAAAAAATTAATTAATATATTAGTTATAGTTTAATAAAATTAATTTTTTAAAATAAAAGTTAAGACACTAAATTTATAATTTAAAAATTCGCCAATAAAATTTTATTCGAGAGCCCAATTTTTTCTTTTGTAATTAAATGTTCATTTAAAAAAATAAATAACTGTGCATGAGTAAAAAAAAATATTAATTTAACGAATTTGGTAAATTTTATGAAATTCTCGAAATTTTGCGATTCAATATTATTTATTTATTTATTATTATTATTATTTTTTGTACTTTTCTCTTTTAAGTAAACTGCTTGTGCTTACTGCTTAGGGCTCACCGATCTCCTGCAACTGTTCTCTGAATCCAATCGCAGCTCTCTCTTTGATCGTCCCTCGCCTTCAATTTCGTTCACGGCTCTCAATTTCATCGAGGTTCGTTCCTAATAATATGTTTGTTTTTAGGATTTGCTTTGCTGATTGAATGTTAGTTTTGGATTTGCTATCTTTCTCCGTCTCACGAATGATTCGAAGTGAGCAATGATGCAACAAATCTCTCTCTCGTGTTCGTTCCATTTACATTATGAAACCATATCTTCAATTGCGAACTTGTTTTTTTTAGAGAGAATGAATTTCTGTACGATTGATAAACTCTGCACTGCAACTCGTTGTTGGCACACGATTTTCTTTGAAATTCCACACTTGGTTGAAATCAAAAGGGGAAGAAAATTTGTTTTGATTGTTACGTTGTTATGTTCTTTGATAATGACATGATATACATACAAGAAGATTACTCTTGTTAACTTAATATGTGATTTGATAATTGGGGTTTTAGGGTTTTACGCTCGGAGGTGGAGAGATGGACGGTAGCGGAAATCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGACAATGAGTGGGGTGGTCGCGACTCTCGTCGTAAAGTTGAACTATTGTGCTCTGATATTTTCACATGGTTTACTCAGAACAAAGGTGATTTTGCTCCTCCCACTTGAATAATATTGGTACTATCTACATGCACTGTTTAACTTTGCAAACAATTAAAATACTTTGTTTTACTATAAACATAAAAAAGAAATCCATTAAACGACGAGATCATTGTCTTATAAAGCTCACTGAGGCGTGCGCCTTGGCATGGCCCCTGCGCCTTGCTTCAAAGAAGCAACGTTCCCTTGATGAAGCGTGCTTGAGGTGTTGCTCCTCAAGCCTAATTCTTACCTTTAAGGGCTATAACAGATATAGTGCTTTTGTGTGCCTTGGGCTGTAAAGAACACTGGGTGAGATTATTTGTATGATTTCTTATTCACATCACAACGTTTTGTCTTTGATGTTCAGTTTGGTTAATTGATGATCTGAATTTTCTTCCTTGAAGAGATTCATTTAGTTCAAATTATTTTCAACTTTTCTAGATGATAGTTGATTTGTAGTGGAACTTGATACCATGAAAGCATAACGTTTTTGTCGTTTCTCATTTCAATACTTCATATTGCTTTTTCTATCTGAAAAAGTTACAATTTTTACCTTGCAGAGACACTATATATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTATATTTTATACCGCTCTCGATCCTTGTTTGTCTTTGAATAAAGCCCTCTTTTTCAGAACTAAGGTTAATAGCATACCGTTATTTTAAGACAGTTAATACAAATATTTGTTTGAACATTGTTGTTGAAATTTATTCTCTTAATCAAATAAATTTATTGTATATTGAGTTTAGTTGTTTACTAGTGGCTAACTATTCTCGATGAATGGCTTTTCTACCTGATTTGATTCTGGATGGTTTTCAATGTGACTTGTGAAACTTGAGTTCTGTTAGAGATATTTTGAAAATTTTGCTTCCACGTCTTAGAGTCTCGTTGCGTGATGCTTTTGGTTGGAATAGTTCGATATCCTATTAAACTTTTAGCTATTTGTTATGGCTAACTTCAGAAGATAGATGCTTGGAGGACGGTGGTGATGGTATAAATAACAACCTAGTGGAACACAATGTAGTTCGTTAGTTTTCGAATCTAATAACCTTTTACATCTAATCTCGAAGTGAATTTATTTTCTTTGTAGTCATTTTCTATGTTCTGTAGGAGTTGACTGGAAAAGCACTTAAAAAGTTCATAATTCTAATAGATCTGTCTAGTCACACTTTATATCTGCTCCACATTTACCTTGTTGCTCTATCTCTTTTGTTAGAATACTTGGTTGAAGCCGAAAAAATGAGATACCGAATACAAACAGAATTCGAGTATTTACTCTTATTAATGGATTTTTGTAATCTCATATTTAAAATCATCTCTGAGAAGTAAAATATGTTACTATGACGTAGCTCATTCGAGATTTGAGTTATTTACTCTAAATAATGTTTTCTCCCTAATGGAGCAGGTAGCTGAAAAATTGATTTTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGTAATGTGAACTTTTGTCCTAACCAGTCGGTCGGTTCTTTCGTGGCTCGTTATTCAATAGTGTGATTTTGGTAGTGTTTGTTATTCCTTGAGTCTACATTGTCATAGCTTATGGTGAAAAAACTTGCAATTTTCAGAGAATCTTTCATTCATTGTACAAAAAAAAAAAAAACAAAGATTTGGCATTATCATCTAATCTTGGCATTGATTAATTTTAAGGCTATGAGTGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGGTGGAAATGGAGGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAGCCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAGTCCCAACCTCTCTCAAATTAATCCATTTTACTGCCCACTACCCATCAATTTTGTTTGGTGTGAAGATATATATATATAACATATTAGAATTCAGCTTGTGTTTTTGGAGATATCACAGGAGTATGCCATTGTTTTCGATTATCGTTTTGTTGATTACTTCTATACGTTCATCGAGTTTGGTAGTTAGATCGAGTAGCTGCATTCTTTAGTAACGTCCCGACACAGGGTTGACTTTATTAGAAGAACAAAAGGATTTTAGTCGGTAGATTGATGCCCATTTGAATTTTGGGTTCTTTCTTTTATTATAG

mRNA sequence

ATGAGATCTACAAGGCTCACCGATCTCCTGCAACTGTTCTCTGAATCCAATCGCAGCTCTCTCTTTGATCGTCCCTCGCCTTCAATTTCGTTCACGGCTCTCAATTTCATCGAGGGTTTTACGCTCGGAGGTGGAGAGATGGACGGTAGCGGAAATCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGACAATGAGTGGGGTGGTCGCGACTCTCGTCGTAAAGTTGAACTATTGTGCTCTGATATTTTCACATGGTTTACTCAGAACAAAGAGACACTATATATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAAATTGATTTTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGCTATGAGTGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGGTGGAAATGGAGGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAGCCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAGTCCCAACCTCTCTCAAATTAATCCATTTTACTGCCCACTACCCATCAATTTTGTTTGGTGTGAAGATATATATATATAACATATTAGAATTCAGCTTGTGTTTTTGGAGATATCACAGGAGTATGCCATTGTTTTCGATTATCGTTTTGTTGATTACTTCTATACGTTCATCGAGTTTGGTAGTTAGATCGAGTAGCTGCATTCTTTAGTAACGTCCCGACACAGGGTTGACTTTATTAGAAGAACAAAAGGATTTTAGTCGGTAGATTGATGCCCATTTGAATTTTGGGTTCTTTCTTTTATTATAG

Coding sequence (CDS)

ATGAGATCTACAAGGCTCACCGATCTCCTGCAACTGTTCTCTGAATCCAATCGCAGCTCTCTCTTTGATCGTCCCTCGCCTTCAATTTCGTTCACGGCTCTCAATTTCATCGAGGGTTTTACGCTCGGAGGTGGAGAGATGGACGGTAGCGGAAATCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGACAATGAGTGGGGTGGTCGCGACTCTCGTCGTAAAGTTGAACTATTGTGCTCTGATATTTTCACATGGTTTACTCAGAACAAAGAGACACTATATATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAAATTGATTTTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGCTATGAGTGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGGTGGAAATGGAGGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAGCCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAG

Protein sequence

MRSTRLTDLLQLFSESNRSSLFDRPSPSISFTALNFIEGFTLGGGEMDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

Homology

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BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.3e-11
Identity = 54/188 (28.72%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 62  LFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMIL 121
           +F E +  VL  W  LQ+AVDN +GG  S++K E +   +  +FT N + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 122 DETMLS-LNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIE----RLRQSPLPRG-AHSHV 181
            E M +  +T VDDGS+ +VA+++  M ++C  G  + +     +L Q     G A +  
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 130

Query: 182 SQA-MSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPEASAPAEDG 241
           +Q    DD+++EEE  D +GG+ G  + +  + D   ++++                +DG
Sbjct: 131 AQTPQDDDDDDEEEAMDCEGGSAGASVSSTAVNDLHHEEEE----------------DDG 181

Query: 242 WVQVTSRR 243
           W  V  ++
Sbjct: 191 WTVVRRKK 181

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BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-07
Identity = 41/161 (25.47%), Postives = 81/161 (50.31%), Query Frame = 0


Query: 63  FQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMILD 122
           F+ G+ +V+ +W AL +AV+N WGG DS  K + +   +   F   K    +D    +++
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEK---VVD--AALIE 91

Query: 123 ETML-----SLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIER--LRQSPLPRGAHSHV 182
           ET+L        T V+D S   +A ++I ++ +C + N++ +E+  L      R   S  
Sbjct: 92  ETLLYAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKR 151

Query: 183 SQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQP 217
              +  D++E++ED +D      D   ++++ D +  + +P
Sbjct: 152 VVHIEGDDDEDDEDVEDYDDEDEDEEMDEVVPDLVSSKPEP 187

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BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.0e-07
Identity = 52/187 (27.81%), Postives = 89/187 (47.59%), Query Frame = 0


Query: 58  DAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDL 117
           DA  LF+ G+   L  W ALQ+AV+N +GG  S+ K + L   +  +F +N + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 118 EMILDETMLS-LNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVS 177
           E  L E + +  +T V+DGS+ +V+++L  M      G+ +++  +      R      +
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 178 QAMSDDEEEEEEDDDDDGGNGGDGMRND-MMVDAIQQQQQPRAVNQPRRPEASAPAEDGW 237
              +  E +E+EDD D          ND    D +  Q +P   +     E     EDGW
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDI-VEDGW 186

Query: 238 VQVTSRR 243
             V  ++
Sbjct: 187 TIVRRKK 191

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BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 46/186 (24.73%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 58  DAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDL 117
           D+  LF+E    VL  W  LQ+AV+N +GG  S+ K E +   I  +F+ N +    +  
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 118 EMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIE-RLRQSPLPRGAHSHVS 177
           + I+       +T V+DGS   VA++L  +  +C  G  ++++ ++ Q    +       
Sbjct: 67  DSIMGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKV 126

Query: 178 QAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPEASAPAEDGWV 237
           Q ++  ++EEE  DD++     +         ++     P +   P++ E   P +DGW 
Sbjct: 127 QEVTPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSA--PKKEE--EPEDDGWT 186

Query: 238 QVTSRR 243
            V  ++
Sbjct: 187 VVRRKK 188

[Close]

BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 47/186 (25.27%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 58  DAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDL 117
           D+  LF   +   L  W ALQ+AV+N +GG  S+ K E L   +  +F +N + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 118 EMILDETMLS-LNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVS 177
           E  L E M++  +T V+DGS+ +V+++L  M      G+ ++++ +      R      +
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 178 QAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPEASAPAEDGWV 237
              +  E +E++D +           +    D +  Q +P   +     E     EDGW 
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDI-VEDGWT 186

Query: 238 QVTSRR 243
            V  ++
Sbjct: 187 IVRRKK 190

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BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.2e-108
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE 226
           LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE 180

Query: 227 ASAPAEDGWVQVTSRRSSRGTRN 250
           ASAPAEDGWVQVTSRRSSRGTRN
Sbjct: 181 ASAPAEDGWVQVTSRRSSRGTRN 203

[Close]

BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.6e-98
Identity = 193/206 (93.69%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G GNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSI RLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDDG---GNGGDGMRNDMMVDAIQQQQQPRAVNQPR 226
           LPRGAHSHVSQAMSD+EEEEEEDDDDD    GNG DGMRNDMMVDAI  QQQPRAVNQ  
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAI--QQQPRAVNQQP 180

Query: 227 RPEASAPAEDGWVQVTSRRSSRGTRN 250
           RPEASAPAEDGWVQVTSRRSSRGTRN
Sbjct: 181 RPEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.7e-76
Identity = 164/204 (80.39%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G  NRLLPA A P FQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDD-DGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRP 226
           LP+ A SHVSQ MSDDEEE+EE+  D D GNG    R DMMVDAI    QPR VNQP  P
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNG----RRDMMVDAI----QPRPVNQP-TP 180

Query: 227 EASAPAEDGWVQVTSRRSSRGTRN 250
           EA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 EATAEAEDGWVQVTSRR-SRGTRN 194

[Close]

BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.7e-76
Identity = 163/205 (79.51%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G  NRLLPA A PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDD--GGNGGDGMRNDMMVDAIQQQQQPRAVNQPRR 226
           LPR A SHVSQ MSDD+EEE+E++  D   GNG    R DMMVDAI    QP  VNQP  
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNG----RRDMMVDAI----QPTPVNQP-T 180

Query: 227 PEASAPAEDGWVQVTSRRSSRGTRN 250
           PEA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 PEATAEAEDGWVQVTSRR-SRGTRN 195

[Close]

BLAST of CmoCh01G016660 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 8.3e-76
Identity = 156/203 (76.85%), Postives = 173/203 (85.22%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G GNRLLPADAFPLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKE LYIDDLE ILDE MLSLNTQVDDGSIEEVAE+LIFMHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE 226
            P+ AH+HV+QA SDD+++++ ++D +        RNDMMVDA+Q  Q  R VN    PE
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVN--------RNDMMVDAVQPAQS-RPVNHQLNPE 180

Query: 227 ASAPAEDGWVQVTSRRSSRGTRN 250
           A+A AEDGWVQVTSRR +RGTRN
Sbjct: 181 ATAEAEDGWVQVTSRR-NRGTRN 193

[Close]

BLAST of CmoCh01G016660 vs. NCBI nr
Match: KAG6608259.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 243/252 (96.43%), Postives = 246/252 (97.62%), Query Frame = 0


Query: 1   MRSTRLTDLLQLFSESNRSSLFDRPSPSISFTALNFIEGFTLGGGEMDGSGNRLLPADAF 60
           MRSTRLTDLLQLFSESNRSSLFDRPSPSISFTA+NFIEGFTL GGEMDG GNRLLPADAF
Sbjct: 1   MRSTRLTDLLQLFSESNRSSLFDRPSPSISFTAINFIEGFTLVGGEMDGGGNRLLPADAF 60

Query: 61  PLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMI 120
           PLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMI
Sbjct: 61  PLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMI 120

Query: 121 LDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPR-GAHSHVSQAM 180
           LDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPR GAHSHVSQAM
Sbjct: 121 LDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGGAHSHVSQAM 180

Query: 181 SDDEEEEEEDDDDDGGNGGDGMRNDMMVDAI--QQQQQPRAVNQPRRPEASAPAEDGWVQ 240
           SDDEEEEE+DDDDDGGNG DGMRNDMMVDAI  QQQQQPRAVNQPRRPEAS+PAEDGWVQ
Sbjct: 181 SDDEEEEEDDDDDDGGNGSDGMRNDMMVDAIQQQQQQQPRAVNQPRRPEASSPAEDGWVQ 240

Query: 241 VTSRRSSRGTRN 250
           VTSRRSSRGTRN
Sbjct: 241 VTSRRSSRGTRN 252

[Close]

BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_022940503.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE 226
           LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE 180

Query: 227 ASAPAEDGWVQVTSRRSSRGTRN 250
           ASAPAEDGWVQVTSRRSSRGTRN
Sbjct: 181 ASAPAEDGWVQVTSRRSSRGTRN 203

[Close]

BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_023524387.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.7 bits (953), Expect = 4.9e-99
Identity = 196/204 (96.08%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G GNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAI-QQQQQPRAVNQPRRP 226
           L RGAHSHVSQAMSDD  EEEEDDDDDGGNG DGMRNDMMVDAI QQQQQPRAVNQP RP
Sbjct: 121 LLRGAHSHVSQAMSDD--EEEEDDDDDGGNGSDGMRNDMMVDAIQQQQQQPRAVNQP-RP 180

Query: 227 EASAPAEDGWVQVTSRRSSRGTRN 250
           EASAPAEDGWVQVTSRRSSRGTRN
Sbjct: 181 EASAPAEDGWVQVTSRRSSRGTRN 201

[Close]

BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 368.2 bits (944), Expect = 5.5e-98
Identity = 193/206 (93.69%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G GNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSI RLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDDDG---GNGGDGMRNDMMVDAIQQQQQPRAVNQPR 226
           LPRGAHSHVSQAMSD+EEEEEEDDDDD    GNG DGMRNDMMVDAI  QQQPRAVNQ  
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAI--QQQPRAVNQQP 180

Query: 227 RPEASAPAEDGWVQVTSRRSSRGTRN 250
           RPEASAPAEDGWVQVTSRRSSRGTRN
Sbjct: 181 RPEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of CmoCh01G016660 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 3.4e-76
Identity = 164/204 (80.39%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 47  MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106
           M+G  NRLLPA A P FQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 167 LPRGAHSHVSQAMSDDEEEEEEDDDD-DGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRP 226
           LP+ A SHVSQ MSDDEEE+EE+  D D GNG    R DMMVDAI    QPR VNQP  P
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNG----RRDMMVDAI----QPRPVNQP-TP 180

Query: 227 EASAPAEDGWVQVTSRRSSRGTRN 250
           EA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 EATAEAEDGWVQVTSRR-SRGTRN 194

[Close]

BLAST of CmoCh01G016660 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 0


Query: 52  NRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKET 111
           N  L  +A  + +EGIGL+L RW+A++ AV+N WGGRDS+ K     + +F +F Q+K+ 
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 112 LY-IDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRG 171
           +  I+ L  +LD+ +  LNT  +DGS++EVA  L+ ++E+C +GN+  +E LR +     
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTS 123

Query: 172 AHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPEASAP 231
           A S V  +  DDEE ++EDDD            DMMVDA  Q+Q+   V++P        
Sbjct: 124 A-SVVKVSNGDDEESDDEDDD---------QTTDMMVDASNQKQEAMPVDEP-------V 183

Query: 232 AEDGWVQVTSRRSSRGTRN 250
           A+DGW  V+SR+ ++G RN
Sbjct: 184 ADDGWTVVSSRK-NKGKRN 184

[Close]

BLAST of CmoCh01G016660 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-17
Identity = 44/100 (44.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 56  PADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYID 115
           P D   + Q  IG +LSRW  LQ+AV N+WGG DS +K + L  ++F   +Q+   + ++
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVE 83

Query: 116 DLEMILDET-MLSLNTQVDDGSIEEVAEKLIFMHEECVDG 155
           ++E +L E+ +LS NT+++DGSIEEVAE+L+ +HEE + G
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:

BLAST of CmoCh01G016660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KRG3	5.3e-11	28.72	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q06672	3.5e-07	25.47	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
Q969E8	6.0e-07	27.81	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]
Q3KPN2	1.3e-06	24.73	Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ...	[more]
Q3T090	1.1e-05	25.27	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]

BLAST of CmoCh01G016660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPH6	8.2e-108	100.00	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J400	2.6e-98	93.69	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1IM14	1.7e-76	80.39	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1F8A7	3.7e-76	79.51	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3E598	8.3e-76	76.85	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CmoCh01G016660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608259.1	1.1e-127	96.43	Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s...	[more]
XP_022940503.1	1.7e-107	100.00	pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]	[more]
XP_023524387.1	4.9e-99	96.08	pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022982103.1	5.5e-98	93.69	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]
XP_022975934.1	3.4e-76	80.39	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]

BLAST of CmoCh01G016660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	1.5e-29	39.20	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	1.0e-17	44.00	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 63..142 e-value: 7.4E-22 score: 77.7
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 57..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..221
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 57..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G016660.1	CmoCh01G016660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus