CmoCh01G016500 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G016500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsignal peptidase complex-like protein DTM1
LocationCmo_Chr01: 12508131 .. 12509130 (-)
RNA-Seq ExpressionCmoCh01G016500
SyntenyCmoCh01G016500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAACTAAGCAGCTTCCACCGGCAAACCCTAGACCCCGGCCCTCACGCACTCTCCTCTTCTCTGTAATGGCCGTCGCTTCGAGTATTCTCTCATTTCTTCCTTCCTTTTCATCTCTAGATCCATGGCCGAAGACGCCGCACTTAAATCCTCTCTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCAATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTCGGTTACTTTTGATTCTTTTTTATCTTCGCGCTCTGTTTCTGTTGTTTGATTGATTCCAGAGCAAAAATTGTGCGAAAAAAATTAGGTTAAGTGATTTTGAAGCCTTTGCCAAATCAATTTCGTAATCGTGTTTATTGAAACTTCGTTTGGTTTTTGAAAGTGATTTTTCGAACTCTTCATTTGAAGGCATGAAACTGTTGCAGGTTTAGGATTTATCCAAAATTGTGCGAGAAAGTTAGGTTAAGTGATTTTGCAGTCTTTGCCAAATCAAATTCGTAATCGTGTTTATTGAAACTTCTTTTGGTTTTTGGAAGTGATTTTTCGAACTCTTCATTTGAATGCATGGAAACTGTTGCAGGTTTAGGATTTATCCAAAATTGTGCGAGAAAGTTAGGTTAAGTGATTATGCAGTCTTTGCCAAATCAAATTCGTAATCGTGTTTATGGAAACTTCTTTTGGTTTTTGAAAGTGATTTTTCGAAATTTTCATTAGAATTCTTGGAAACTGTTGCAGGTTTAGGATTTATCCAATCAGACTGGTTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAAATCCTCCATCATATCTTGTAGTTATTATC

mRNA sequence

ATAACTAAGCAGCTTCCACCGGCAAACCCTAGACCCCGGCCCTCACGCACTCTCCTCTTCTCTGTAATGGCCGTCGCTTCGAGTATTCTCTCATTTCTTCCTTCCTTTTCATCTCTAGATCCATGGCCGAAGACGCCGCACTTAAATCCTCTCTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCAATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTTTAGGATTTATCCAATCAGACTGGTTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAAATCCTCCATCATATCTTGTAGTTATTATC

Coding sequence (CDS)

ATGGCCGAAGACGCCGCACTTAAATCCTCTCTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCAATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTTTAGGATTTATCCAATCAGACTGGTTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAA

Protein sequence

MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRWISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST
Homology
[Close]
BLAST of CmoCh01G016500 vs. ExPASy Swiss-Prot
Match: Q7XI45 (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-20
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           M  D  L+ SLV LAAAVV+ G+ T S +K A TY  G+ AIAG+LLPDW FFDR++S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  ISPVTEEERESYRISTASRNP--RFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ++P+    R +   +    +   +F+ YP+R+ +   +Y   LYKWW +VS+
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

[Close]
BLAST of CmoCh01G016500 vs. ExPASy TrEMBL
Match: A0A6J1FJI2 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446307 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.7e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. ExPASy TrEMBL
Match: A0A6J1J358 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480862 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYA VYS ALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. ExPASy TrEMBL
Match: A0A6J1DGG6 (signal peptidase complex-like protein DTM1 OS=Momordica charantia OX=3673 GN=LOC111020250 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VV+VGI+THSF  MAVTYLVGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVVVGIATHSFTNMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
            SPVT EERES RIST S+  RFRIYPIRL+VY IVYS ALYKWWKF+S+
Sbjct: 61  TSPVTAEERESDRISTGSQLRRFRIYPIRLIVYTIVYSFALYKWWKFISS 110

[Close]
BLAST of CmoCh01G016500 vs. ExPASy TrEMBL
Match: A0A5A7TAS9 (Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006230 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
            SPVTEEERESYR +T S+  RFRIYP+R++VY IVYS+ALYKWW++V++
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]
BLAST of CmoCh01G016500 vs. ExPASy TrEMBL
Match: A0A1S3CQR6 (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
            SPVTEEERESYR +T S+  RFRIYP+R++VY IVYS+ALYKWW++V++
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]
BLAST of CmoCh01G016500 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. NCBI nr
Match: KAG6608241.1 (Signal peptidase complex-like protein DTM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-52
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. NCBI nr
Match: KAG7037595.1 (Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. NCBI nr
Match: XP_023524429.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYA VYS ALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]
BLAST of CmoCh01G016500 vs. TAIR 10
Match: AT1G34640.1 (peptidases )

HSP 1 Score: 117.9 bits (294), Expect = 5.3e-27
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           M  +AAL+SS+V LA  +V+V + T S KK  VTY VG+  I GILLPDW FFDR+FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVS 110
             PVT EER S  ++  S   RFR+YP+R+V+Y  VY  A+Y+WW FVS
Sbjct: 61  GYPVTAEER-SAALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVS 108

The following BLAST results are available for this feature:
BLAST of CmoCh01G016500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XI451.2e-2043.75Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of CmoCh01G016500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FJI25.7e-53100.00signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3... [more]
A0A6J1J3582.0e-5095.45signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita maxima OX=366... [more]
A0A6J1DGG61.2e-4282.73signal peptidase complex-like protein DTM1 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A5A7TAS91.5e-4076.36Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CQR61.5e-4076.36uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=... [more]
BLAST of CmoCh01G016500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940831.11.2e-52100.00signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata][more]
KAG6608241.13.4e-5299.09Signal peptidase complex-like protein DTM1, partial [Cucurbita argyrosperma subs... [more]
KAG7037595.11.3e-5198.18Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyro... [more]
XP_023524429.13.8e-5197.27signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022981833.14.2e-5095.45signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima][more]
BLAST of CmoCh01G016500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G34640.15.3e-2755.96peptidases [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009542Signal peptidase complex subunit Spc1/SPCS1PFAMPF06645SPC12coord: 9..63
e-value: 7.1E-8
score: 32.4
IPR039955Signal peptidase complex-like protein DTM1PANTHERPTHR38354SIGNAL PEPTIDASE COMPLEX-LIKE PROTEIN DTM1coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G016500.1CmoCh01G016500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048658 anther wall tapetum development
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
cellular_component GO:0005789 endoplasmic reticulum membrane