CmoCh01G015040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G015040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 11616433 .. 11617169 (-)
RNA-Seq ExpressionCmoCh01G015040
SyntenyCmoCh01G015040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACGTCAGACGGAGACAAATGGCTGCAGTTCAAAAGTGCGAAGTGACGTCAGACTGGTATCCGAGTGGTCAATGAACATGAGGTGGAGGGTGGGTTTGGATGGAATATATTTATATTTTTGGTGGGAGAAAAAAAAAAATCCTTAAATCCGAAACGGTATGCAGATCCAACGGTCAGAAACAAATCATCTGAATCCTCAATAAAACTGGCGATCAGGATTTTTTTATAAACCAAGGGTAAAAGTGGAAATTAGAAGAAAAGTCTGCAAACGTGGGACAAGTGGGGCCCACGGGGAGCTGAGGGACGTGGCTAGAATATTAAAAAATGGAAATTAGAGGGGCTGAATTGGCATTTGATTGACAGGCTGTACACAGCTGGAAACCAAATTCTGAAAGCCTTCTCCAAACGCAAACCCTCCCCTATTCATTCACAGCCTGTTCGCAACTAATGCTTCTCTCTAAAAACTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGTACTTGCTTCTACGAACAGTAATTGCTTCTGCAATTTTGTTGCAGAGTGATTTACTTAAGAGTTCATCCTCGAGGTGGATTTTGATTCGTCTGTACTATTTTTCCCTTTTCTGCACTGCATTCTGAAGCGGAAGAACCGCCGGGGAATCGAGGTTATTGTTCTGGTAATGGTGTTTTTGAGGGTATATTTCCGCCATATTACACGCATTTCTAGGTTTTGCTTCCATGATTAA

mRNA sequence

ATGCCACGTCAGACGGAGACAAATGGCTGCAGTTCAAAAGTGCGAAGTGACGTCAGACTGTTCATCCTCGAGGTGGATTTTGATTCGTCTGTACTATTTTTCCCTTTTCTGCACTGCATTCTGAAGCGGAAGAACCGCCGGGGAATCGAGGTTATTGTTCTGGTAATGGTGTTTTTGAGGGTATATTTCCGCCATATTACACGCATTTCTAGGTTTTGCTTCCATGATTAA

Coding sequence (CDS)

ATGCCACGTCAGACGGAGACAAATGGCTGCAGTTCAAAAGTGCGAAGTGACGTCAGACTGTTCATCCTCGAGGTGGATTTTGATTCGTCTGTACTATTTTTCCCTTTTCTGCACTGCATTCTGAAGCGGAAGAACCGCCGGGGAATCGAGGTTATTGTTCTGGTAATGGTGTTTTTGAGGGTATATTTCCGCCATATTACACGCATTTCTAGGTTTTGCTTCCATGATTAA

Protein sequence

MPRQTETNGCSSKVRSDVRLFILEVDFDSSVLFFPFLHCILKRKNRRGIEVIVLVMVFLRVYFRHITRISRFCFHD
Homology
BLAST of CmoCh01G015040 vs. NCBI nr
Match: KAG6608105.1 (hypothetical protein SDJN03_01447, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-04
Identity = 32/54 (59.26%), Postives = 32/54 (59.26%), Query Frame = 0

Query: 1  MPRQTETNGCSSKVRSDVRLFILEVDFDSSVLFFPFLHCILKRKNRRGIEVIVL 55
          MPRQTETNGCSSKVRSDVRL                      RKNRRGIEVIVL
Sbjct: 1  MPRQTETNGCSSKVRSDVRL----------------------RKNRRGIEVIVL 32

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608105.15.3e-0459.26hypothetical protein SDJN03_01447, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G015040.1CmoCh01G015040.1mRNA