CmoCh01G014190 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G014190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
LocationCmo_Chr01: 11136871 .. 11143091 (+)
RNA-Seq ExpressionCmoCh01G014190
SyntenyCmoCh01G014190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTCTCTCTCGTCCAAGTTTGATCGAGGGAGAAAGTTGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGTAATGATTATAATGTTATCTCTCTGTCGATCATGTATGAAATGTTTCATCGGTTTTGTGTTTGATTTCTCATTCTTCTTCGTATTGGCTATGGTTTTTTGGTTTTTGATTCTGGTTTGCAGGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGGTATGGTTCTTGTAGGTTTAATTTTTAGTTTCGACCTCTTCTTCTCCTTCTTCTGCGGGGATAGGGCCGGAGTTCAGTTTTTTGACAGACGAGTGAGACTTGTAGGAAATTGGAGTTCTCGATTATTTGTTCAATGCGATACTTACTGAATTACTGTTATAGCTTTCTAATGAACATAAATAGTAGCCCGGTGACCATGCAATATGTCTCCATTGTCCGCTTGCATTTCGAATTGGCATGCCTAGTTGTTTGAAATTATCATTTCAGTCCGTCGCCTGGGACCTGGTGCTCATATCGCATTGCAATTTATTGCTATAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGCGGATGAAAAGCTACGTTGCTAATGTTCCTATTTCCCCGTTTTTATAGAAGCTTGTTTCTAAATTATAATACAAAATTGCAGGTTTAGTTAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATTGTCGTGAAGAATGTCTTGGCTGCAAAATACAAGGTTGTGATGCTTGAATTTACCGTTTTATTGACGTGATGTATACGTGTACATAGGTTTTTTTATCTGTGTAAAGATCCCCCAAATATTTATACAAAATTCTAAATTTCTGACAATTATAGTTTAAAATAAGAAAGAGAATGGATGGAAAGACGGATCTTGAAAGATGATGGTTTTGAGGTGGGGAGTGGAGGTGGGAAAGGGAAAGGATTAGTGATAGTTGAAACATTAATTTTGTTTCAAATGCAAAGGCAACTCCGTGAAATAGCTGCACTTCTATAACCATTAAGATTCCTAATTATTTGAAACACTACAGCAATCCAGGGCCTAGAATAGAAGCGATGATATGGGAAATACTGATGATGTCAGAGCCTTGACTATTACTAGAAGGATTTATGAGGAAGGGATTTTATTATACCAAAAGCATTATATAGCAATCATTATGCAGCACAGTTGTTATCTTAACACGAGGCATTTATGAATATAATCTTCAAAATCTTCTGCATTCCACATAATTGATGTAACATAGTACGTAAGTGAGAATAGCTATTGATATCTCGCAGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAAGTAAGTCTTCGGAGTGTATATAATTCTAAATCAGTTCCTTTGACCTCATTGTATCTCAAGTATATTCCCATCCTGTTAACAGATTGATTTAGAAAAGTTCAAGATAATTCCAATGTCATTTAGCATATGAAAAGGGTACCATTCCTTTTAGCATATGAAACTATGGCTTTGACAAATTTATTCATTTTATTGATGATATATATTCTGACGATCATATTTGAATTCTCTCCTTGACAGCTGAAATTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGGTAAAATATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTGCTTCGACAAAAGTGTATCCTTTTATTGGGATCAATGCCTTTTATGTTTAAATATTTGATTTCTTTTGTACTTGGGTTAATCCGATAAGGTACCAGATTTTCCCGCCTGATTGTTCCGTCATTGGTCTGGTGAATTGTTTCCTAGAACAAAAAAGATTATACTTTCTTTGAGTAGTCATTTTATTTGCAAAATTCAATCATCCCGAATGCTATTCTTAAAACTAGCTTGCAAATAAAATGCAGTAGACTATTTTTCAAACTTGATATTAATCAATACTGTACCCTTTACGTGATTTTGGCATTATGAAAACTTTTCTTCTCTGTTTGGTTTTTAAAAATTTTGTTTGATTTTTCCTTATTGCTCTATAATAAGTTTCATCTTTCTTAGGAAAATATTTCGCTAAAAATATTGGTTAAAAGAGCATTTCACTAAAGAACTCAACCCTGTAAAGCTATACTGAAATCACTCTTAGACTAATAAGTACAAACGCATTTCAGTTTTGTCTTTGTAACTCAGTTAATGAGATTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGTGTGTGCATGTGTTTTCTTTGTCATTTATACCTCTATTGCAATTATGTGTGATGAATGTTTGAAAATTGTATCCCTCTCTGTCGACAAGATTTTGGAAGAACTGAATAGATTACAACTCATAAGATTTTAGAATCATCAATGAAGTTGAAATTGATGCTAGGAACAAACTAATTACTTGGCTATTAGTTCCAGCCTGTTAACAGTTCAATGTTTGTAGGTCGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAAACCTACATCTACCCTTGTAAAATACGTAAAGCCTTAGCCGCACTGTGAAGGTTTGATTAGAGCTTGATATAAGATTTAAATATGCGAAGATATAAAATACGCGTGTTGGTACGCTAGAGAATTAAATGTCAAGAAAATAGGTTTGATTAATTTAATAAGACGCAATGTGCGTTTAAAAAATTAGTCATCAAGAAAGTAAACAAGATTAGTGGAAAAACTGCCTCCAGAAAATATCTTGGGCAAAAAAAGTCCTGCACTGTTTCGATGATTAAAAAAAAATACATATTTTCTAGATTTTGTTTTTAGAAATCAAGGTATATTCATTTTTGGGTTTTAAAAAAAATTAAAAAGTTTCTTAAATTGTAGTTTCATGAACTGGGTAATTACATGAATTCATCAGATAAATACATAGTGTATGTATATATTTCTATTTATTTATTTATGTAGGGAGAGAATTTGAACTCTGATCTTTGGATTTAAGATTATAGGCTCAATTTGACATTTATATCTTTAATTTATATATTATATGCATTTAAAAAATAACAAAAACTATTCACTCTTTTTAGTACGAAATATAATATTGAAAACAATATTAAATATTGGTCCTTCGGACACCTTACACAACATACAACAATATATGGAGAAACAGCAGCAAATTACAAAAGCAAACACACGCCCCCAAAGGGAGAATGGTTCCCCTTTTGTGTGCGTGTGTGTGTGTGGTGGGGGAATGAGGTGTAGAAAGAAACAGTTGCATTATTCAAATATTGTCACTAATACATGAAAACCCTTGAATGAAAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCCTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTTGTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTTGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATTCGTGAGTTGCTTTCAAAACCTACTCTCTGTTTGTAAGAAAATTTGATTGCATGATATATTTTCACGAAAAAGCATAAAGTTTGAAGTGTAGGTGCATGCTTACTTGAAGCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTCTTGAAATTCTCCTCTCTTTCCAGCTCGTAGCACTCTGAACAAACCTTCTTCACCCTCTCCAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGGTAACATATATTTTAGTCCACAATATTATAGAACATTTAATTAGCGCTCTTGCATGAAAACATTGACCAACTTGAGTATAGCTCACTCAACTGGTTAAGACATTATATCTCCGATAAAAAGATAGATTCAAATAGCTACCTCTTGAAAAACCGTTACTCAATGAATAGAATAACTGTTAAGTTTGTGCAAACTACCTGAAAGAATCCCCATTCTTCACAGCCATTAGCTATCTGAGCCAATGTCTTGACCCTTTCTTCTCCATCAAGCTTTGAGAAATCAATGACTGGGATTGCCATTAGAATTCGAAAACACTGTATTTTAGGAAGAGAAATTGAGAAGATGGATTAAGATCTTAAGGTGTTGTAGTTGAATAAGAGAGTTTATGTTGGTGGGTTTGGAAAGGAAAGGGCAGTCCCTATTTATAAGGGCTTCCCTCCAACTTGGATGTCAACTCTTTGTTTATTAAATCCCTTTTCTTTTAAAATAAGAGCCCCCCCTTGAAATGGGACGGTGACTTTTTTAGTAAAGAATTGTTCAATAGTCAATGCCCTCTGAAGTTCTACCTCTGTTTGCAACACATTGCTGAAGGCACTCAACTCTACGTGGGGTCCCACACACCCCGTCTTGTAATTAATTAAATCGTTGCCGACTGTTTTGATTGGCTCCAATCTCTTAAATCTTGGAGGCTACCAATCATGGGGCTACCATGGAGAAGTGCATAATCATTTTATAATGATACGATTGCTTGATGAACAAATTTTTATGCTTCAGTTCTTAATCAGCGGTATTATTTTTTAATTCAAGTCTTATTGTTCTAAAATTTATACCATTTTTGTTTGTCATTGTTTAGATTTACTGATACCGATGGTAAACTCGTGGTCGTGGCATAATTCTTGTTAAGCTGGCGAAGTGGAATTACGCACCCCTCAACCGAGGTAGTCTCTAATCCTTCTAAATGTTTATGATATCGTCAAAATTTGAATTTTCTTTTAGGTGGGTTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGGTGTAATCAAGCGTTTTTAAATAGTAAGGGACTAATTTAAAACTTTTTAAAAGTATAGGATTAAATTGAAATATTACCTAAATATTAAGAACTAAAATGTAGCCCTAAATCATTGTCACATGTGGCAAAAACCAAGCAAATGATAATGATATTAATCTTACTTAAAACATAAATCTATGCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCATAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACATCTTACACTAATTTGAAGGCATAGTTTGTGGGTTAAGTAAAATAGGCTGCATCGTATCATGGC

mRNA sequence

TCCTCTCTCTCTCGTCCAAGTTTGATCGAGGGAGAAAGTTGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAATAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCCTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTTGTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTTGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATTCTGTAGGTGCATGCTTACTTGAAGCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGATTTACTGATACCGATGGTAAACTCGTGGTCGTGGCATAATTCTTGTTAAGCTGGCGAAGTGGAATTACGCACCCCTCAACCGAGGTAGTCTCTAATCCTTCTAAATGTTTATGATATCGTCAAAATTTGAATTTTCTTTTAGGTGGGTTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGGTGTAATCAAGCGTTTTTAAATAGTAAGGGACTAATTTAAAACTTTTTAAAAGTATAGGATTAAATTGAAATATTACCTAAATATTAAGAACTAAAATGTAGCCCTAAATCATTGTCACATGTGGCAAAAACCAAGCAAATGATAATGATATTAATCTTACTTAAAACATAAATCTATGCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCATAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACATCTTACACTAATTTGAAGGCATAGTTTGTGGGTTAAGTAAAATAGGCTGCATCGTATCATGGC

Coding sequence (CDS)

ATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAATAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGCCATCAAGAGAGTGA

Protein sequence

MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFRIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIRKLYLVQQFQLHNFEITLHVPDVAAAIENLLEQTRAERKEDVRILILEMGAEAYMVVFVKHKPSLRPSRE
Homology
[Close]
BLAST of CmoCh01G014190 vs. ExPASy TrEMBL
Match: A0A6J1FS45 (uncharacterized protein LOC111446737 OS=Cucurbita moschata OX=3662 GN=LOC111446737 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.1e-50
Identity = 101/118 (85.59%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF-- 60
           MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF  
Sbjct: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFSP 60

Query: 61  ---------------RIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIR 102
                          RIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIR
Sbjct: 61  SPGTWCSYRIAIYCYRIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIR 118

[Close]
BLAST of CmoCh01G014190 vs. ExPASy TrEMBL
Match: A0A6J1IK64 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477010 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK 47
          ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPK 50

[Close]
BLAST of CmoCh01G014190 vs. ExPASy TrEMBL
Match: A0A6J1IHL3 (DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477010 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK 47
          ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPK 50

[Close]
BLAST of CmoCh01G014190 vs. ExPASy TrEMBL
Match: A0A6J1FES7 (DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443414 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK 47
          ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPK 50

[Close]
BLAST of CmoCh01G014190 vs. ExPASy TrEMBL
Match: A0A6J1F9V4 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443414 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK 47
          ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPK 50

[Close]
BLAST of CmoCh01G014190 vs. NCBI nr
Match: XP_022941443.1 (uncharacterized protein LOC111446737 [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 8.4e-50
Identity = 101/118 (85.59%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF-- 60
           MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF  
Sbjct: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFSP 60

Query: 61  ---------------RIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIR 102
                          RIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIR
Sbjct: 61  SPGTWCSYRIAIYCYRIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIR 118

[Close]
BLAST of CmoCh01G014190 vs. NCBI nr
Match: KAG6608031.1 (hypothetical protein SDJN03_01373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.2 bits (461), Expect = 3.8e-42
Identity = 100/152 (65.79%), Postives = 108/152 (71.05%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFRI 60
           MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSR+G K RGS REGVQF RI
Sbjct: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRI 60

Query: 61  EFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGI-RKLYLVQQFQLHNFEITLH 120
           EFLLLGGSS      + V+              W    G  R L   ++    +  +TLH
Sbjct: 61  EFLLLGGSSADEKTAEIVE--------------WINQKGEGRLLRTTRETTSKSSVVTLH 120

Query: 121 VPDVAAAIENLLEQTRAERKEDVRILILEMGA 152
           VPDVAAAIEN LEQTRAERKEDVRILIL  G+
Sbjct: 121 VPDVAAAIENFLEQTRAERKEDVRILILGDGS 138

[Close]
BLAST of CmoCh01G014190 vs. NCBI nr
Match: KAG7031656.1 (hypothetical protein SDJN02_05697 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25
Identity = 80/186 (43.01%), Postives = 92/186 (49.46%), Query Frame = 0 

Query: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFR- 60
           MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSR+G K RGS REGVQF R 
Sbjct: 1   MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRH 60

Query: 61  -------------------------------------IEFLL------------LGGSSV 120
                                                ++ L             +   S+
Sbjct: 61  VSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKILASVREVSYCNGRSIAYKSI 120

Query: 121 RAFMCKRVQTASSTGFYLLPCYGWCENSGI-RKLYLVQQFQLHNFEITLHVPDVAAAIEN 136
             F    V+   +  +       W    G  R L   ++    +  +TLHVPDVAAAIEN
Sbjct: 121 SRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIEN 180

[Close]
BLAST of CmoCh01G014190 vs. NCBI nr
Match: XP_022936988.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-11
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK 47
          ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPK 50

[Close]
BLAST of CmoCh01G014190 vs. NCBI nr
Match: XP_022976695.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-11
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK 47
          ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Sbjct: 1  MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPK 50

[Close]
BLAST of CmoCh01G014190 vs. TAIR 10
Match: AT1G77320.1 (transcription coactivators )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          F G NVF+S NLV  E+F    DA K NGA++F+CCDPSR+G
Sbjct: 7  FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSG 48

[Close]
BLAST of CmoCh01G014190 vs. TAIR 10
Match: AT1G77320.2 (transcription coactivators )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG 45
          F G NVF+S NLV  E+F    DA K NGA++F+CCDPSR+G
Sbjct: 7  FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSG 48

The following BLAST results are available for this feature:
BLAST of CmoCh01G014190 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G014190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FS454.1e-5085.59uncharacterized protein LOC111446737 OS=Cucurbita moschata OX=3662 GN=LOC1114467... [more]
A0A6J1IK649.8e-1276.00DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1IHL39.8e-1276.00DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1FES79.8e-1276.00DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Cucurbita moschata OX=3662... [more]
A0A6J1F9V49.8e-1276.00DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucurbita moschata OX=3662 G... [more]
BLAST of CmoCh01G014190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941443.18.4e-5085.59uncharacterized protein LOC111446737 [Cucurbita moschata][more]
KAG6608031.13.8e-4265.79hypothetical protein SDJN03_01373, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031656.11.4e-2543.01hypothetical protein SDJN02_05697 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022936988.12.0e-1176.00DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata][more]
XP_022976695.12.0e-1176.00DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima][more]
BLAST of CmoCh01G014190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G77320.12.2e-0859.52transcription coactivators [more]
AT1G77320.22.2e-0859.52transcription coactivators [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G014190.1CmoCh01G014190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016853 isomerase activity