CmoCh01G013940 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G013940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 10978530 .. 10981733 (+)
RNA-Seq ExpressionCmoCh01G013940
SyntenyCmoCh01G013940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTAAGCTCGAGGCATCACAATAAGGTATGAGGTAGTAAAGACTAGAGTGTCCTACCTTTCTGTTAATCAACGGCGTTCTGTTTGGGCCGAGTATTTCGTGCTGGAATGGAAGATGATAAGAGGGGTTAATGGGCTGTGCAACATAGCTTCAAAGCGTCCATGTGTTTATCTAATAGATAAAATACTACTAATGCAATTTTAACCGTTTCTTAGACCAGCAAAGTGTTCAAGTAACAATTCTCATCTATTTTGTTACCCTGAAAATATACTGCAGTTCATATTCATGGGTTGCCAGTCAGCAACAATGCCTTTTCTCTTATTATTTCTGAAAATTGGAGTAAGCAATGTGAACAGTCCAAATCTTCTGACAAATATCCTTTTGTTGAAAAGCTCTGTCAATCTGGATTAAATCGCCTTGGACTTCAATCTTTGCAGTATATGGATTATAATGAAATATGGATGCACAATGAGCCTTTTGCTGTGTGCATACTAAGTACTTGTCGCTGTTATATAGGACTGATGATACAGTTAGTATCACATTTTTTTGTGCCTTCTTATCATAGAATGTTTATTTAATGTCTTTTGAAAAAAAAAAAAAAAAATGCTAGATGGAGATCCTCCATAACCTCCTCCCCTGCCCCTCACCTCACTCAAAACCTCTGATATTAATGGAAATGATATGTATTTTTATGTGAATTTTTCTTGTCAAAATTATGTCACTGGCTCTTAATATTTCCCAATGTAACTAATAAATCTTATGCAGGGACTTATTTTGGCCTTATTGGTCTCCGAATTTTGATCATACCTACAATCGCTAGGAAAGTTGTTGCGGCATAAGATTTATTAGGAGAAAAGGTGTAACGACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCTTTTCGGGTTTCCCCACGAGGCTTCAAAACGCGTCTGCTAGGGGAAGGTTTCCACACTCTTATAAAGGGTGATTTGTTGTGGGACATCACAAAAGGTATTACATACTAGCCAATATAGCATTTTCTCCGAATTTTGATCTAAGAGATAGTTTTAGAGCTGNTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTAAATCAATAGTTATGTATGCTTATCCGGAATTAGAGAGAGATGCCATTTTATTTATTTCTTACTTTTTATATTTTCAACAGGAAGTATTTAGATAGCTTTTTGGCCTTATTCAGTTGAGATTTGAAATAAAAGTTTCAAGTGATATTGCGTTGAATTTAAAAGGTTCAAAATTTTGAAAAGGGTTTTGATCGTTACATCCCAGATGTCAATTTTGATACGAGTGCTTTAGGAGCGAGCATACTTACATGGTCCCCTCACCCACCCACCCCCCTACTTTTTGTATTTAAATATTTTATTTATTTATTTATTTATTTTTATTATTATTATTATTTTGTATATTTTAAATATAGTTTATTAGATTCGTTAGACTAGTTTAAGCTTGTTTGCAAAGTTGATTTCTTTGTAGAAATATTTTCAAGCTCATTTAGTGTTCTTAGAATCATTTAGCTCATTTCTATCCTTGTTTGATAAATATGTCATTGTTTTAATTAAATTTATAAACACTATGTCCTTTATATGTAATTCTTATCTGTTATCTACTTTTTTACAAATGTTTTTAAAATTCAAGTCAAGTTTGGAAAGCTAAAAAAGTAAATTTTAAAATTTGTTTTTTATTTTTGAAATCTAACGGAAAATTCAAACGTTTTCTTTAAGAAAGATAGAAAACTAAATGGTTATCGAATGTATTTGTACTTGGTTTTATGTAGTCCAAGGCTTTTACAAAGTTGTTTGTTGGATATGGGTTGGTGGCCGTAGCGGCAAGGTGTCAAGGTGAGGATCAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTAAGACAATGAGAGATTGGATAAGAAGACCAATCAGAAAGAAGCCTTTTATGTATCTTCTGTAAAAAGGTCAAATAGTTTACAATAATTTCTTCCTGCTTAACCCAGTGGCAAAATTGTAATCTCTCTAAACTTTTGAAGAATCTCAAAAGCAGGAAGAAATATCATCTTAATCCGATACATCAGGTGGAGCTGAAAATCTGCATCTAAGATTATATATCTTAACCAACTGAACTATGCTCAAGTCGACAATCGACCTTTATATTGACCTGAAGATGTTGTTTAGAAGCTCAAACTGGCTATATGAGTTGACAAATCAAACTGCAATTTCGGTACGGTACGGCTTCTTTAGTTAAACAGATGGCAGTTCCTCAGTGTGTGGGATACATATCTCTATTTTGAATACTATTTTGTCGTTCTTTCCATTAAGGATGAGGCTGGAGGACAATTTCAGAGACCAGCGGATGAAAGAATTAGAAGGGGAGTTGCTATCAATAGAAAGGTACGTCGTCATCTCTTGTCTGAGTAGAAAACAAAGATGGTACAGTTTAAAATGGCTGGTGTTAAACTAACTACACATGAACTTGTCAAAAGGCTTTGTTTTAGTTTGTTTGTGTGGAATCCTTTAGCTTTTGGGAAAGTTTGAGTATATCTACAAAGGAATTATGTGTTGAAAGGTTTTAATTCATTTGGATAATGGAATGGGATGATGATGTCTCTCTGTCTTGATCAAAATTATTAAGCATGGGATTGGGATTGCGAAGGCCTAGGATGATGTTGATGGAGTTTAGATAAGGGTTGAAGGTTTTTTTTCTTTTTTTCTTTTTTTCTTTAACGTGGGTAAAACATTTAAACGTCTAATTATTGACAGAGTCGTCCGTCACTTAATTAGTTGAAAATTTTAAAAGGCTATTAGTAGCTTATTGGTTGAATTATACCACTTTTCAACTAGTTTTTTTTTTTTTTTTTTTTTTCTTTTTACATTAAAAAGTTGTTTGCCCATGGGTTGTCTTTATTTTATAATTTTAATATAATAATAGTTCTGTTTATATATTTTTAATTAGTGTGTTTAATTCTTGGTCATTGCAGCTTACTCTTTTTGAATGATGAGCATCTGTCTCCTACAACTCTTGTCTTCTTCGTTGGCCACTGA

mRNA sequence

ATGAACCTAAGCTCGAGGCATCACAATAAGGGACTTATTTTGGCCTTATTGTCCAAGGCTTTTACAAAGTTGTTTGTTGGATATGGGTTGGTGGCCGTAGCGGCAAGGTGTCAAGGAAGAAATATCATCTTAATCCGATACATCAGCTCAAACTGGCTATATGAGTTGACAAATCAAACTGCAATTTCGGTACGGATGAGGCTGGAGGACAATTTCAGAGACCAGCGGATGAAAGAATTAGAAGGGGAGTTGCTATCAATAGAAAGCTTACTCTTTTTGAATGATGAGCATCTGTCTCCTACAACTCTTGTCTTCTTCGTTGGCCACTGA

Coding sequence (CDS)

ATGAACCTAAGCTCGAGGCATCACAATAAGGGACTTATTTTGGCCTTATTGTCCAAGGCTTTTACAAAGTTGTTTGTTGGATATGGGTTGGTGGCCGTAGCGGCAAGGTGTCAAGGAAGAAATATCATCTTAATCCGATACATCAGCTCAAACTGGCTATATGAGTTGACAAATCAAACTGCAATTTCGGTACGGATGAGGCTGGAGGACAATTTCAGAGACCAGCGGATGAAAGAATTAGAAGGGGAGTTGCTATCAATAGAAAGCTTACTCTTTTTGAATGATGAGCATCTGTCTCCTACAACTCTTGTCTTCTTCGTTGGCCACTGA

Protein sequence

MNLSSRHHNKGLILALLSKAFTKLFVGYGLVAVAARCQGRNIILIRYISSNWLYELTNQTAISVRMRLEDNFRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH
Homology
[Close]
BLAST of CmoCh01G013940 vs. NCBI nr
Match: KAG7037522.1 (hypothetical protein SDJN02_01150, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 74/98 (75.51%), Postives = 79/98 (80.61%), Query Frame = 0 

Query: 18  SKAFTKLFVGYGLVAVAARCQGRNIILIR------YISSNWLYELTNQTAISVRMRLEDN 77
           SKAFTKLFVGYGLVA+AARCQ    +  +      +     L+E TNQTAISVRM LEDN
Sbjct: 1   SKAFTKLFVGYGLVAIAARCQDDERLDKKTNQKEAFYKLKRLHEWTNQTAISVRMWLEDN 60

Query: 78  FRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH 110
           FRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH
Sbjct: 61  FRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH 98

[Close]
BLAST of CmoCh01G013940 vs. NCBI nr
Match: KAG6608004.1 (hypothetical protein SDJN03_01346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 70/109 (64.22%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 1   MNLSSRHHNKGLILALLSKAFTKLFVGYGLVAVAARCQGRNIILIRYISSNWLYELTNQT 60
           MN+SSRHHNKGLILALL                                   L+E TNQT
Sbjct: 68  MNISSRHHNKGLILALL-------------------------------KLKRLHEWTNQT 127

Query: 61  AISVRMRLEDNFRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH 110
           AISVRM LEDNFRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH
Sbjct: 128 AISVRMWLEDNFRDQRMKELEGELLSIESLLFLNDEHLSPTTLVFFVGH 145

The following BLAST results are available for this feature:
BLAST of CmoCh01G013940 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013940 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037522.15.8e-2875.51hypothetical protein SDJN02_01150, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608004.11.9e-2364.22hypothetical protein SDJN03_01346, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G013940 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G013940.1CmoCh01G013940.1mRNA