CmoCh01G013430 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G013430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 10641833 .. 10642289 (+)
RNA-Seq ExpressionCmoCh01G013430
SyntenyCmoCh01G013430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGACGAGGTTGATGTTAAGGAGCTTAGCTCTAATGGTGGTGCAAAGGCACACCGCTGCGTCCAAATCCACGAGCCCTTCAAGAACCGGGCAGCAAGTTTGTTTGGTTTGGTCGCCAATTCCGATATGGATTAGCCCACCCAACAAGTCCACACATGCTCCCAGCTTCAGCGTGTCAATGGGGCATGTCCCTTGCTTTGGCGGCGGCGGTGGGCACGGTGTGTTTGGTGATGGCACTACTGGAGCTGGCTTCACTGGTGGTGGTGGGCTAGGCACTGGCACGTACGTTGGTGGCGGTGGTGGTTTGGTTACTGGTGGCTGGACGTATGGGGGAGGAGGCTTGGAGACTGGTGGTTGGACGTAGGGTGGAGGAGGCTTGGCTACTGGTGGTTGGACGTAGGGTGGAGGAGGCTTGGATACCGGCGGCTTTGGGACATAGGGAGGAGGAGGGG

mRNA sequence

ATGGGGATGACGAGGTTGATGTTAAGGAGCTTAGCTCTAATGGTGGTGCAAAGGCACACCGCTGCGTCCAAATCCACGAGCCCTTCAAGAACCGGGCAGCAAGTTTGTTTGGTTTGGTCGCCAATTCCGATATGGATTAGCCCACCCAACAAGTCCACACATGCTCCCAGCTTCAGCGTGTCAATGGGGCATGTCCCTTGCTTTGGCGGCGGCGGTGGGCACGGTGTGTTTGGTGATGGCACTACTGGAGCTGGCTTCACTGGTGGTGGTGGGCTAGGCACTGGCACGTACGTTGGTGGCGGTGGTGGTTTGGTTACTGGTGGCTGGACGTATGGGGGAGGAGGCTTGGAGACTGGTGGTTGGACGGTGGAGGAGGCTTGGCTACTGGTGGTTGGACGTAGGGTGGAGGAGGCTTGGATACCGGCGGCTTTGGGACATAGGGAGGAGGAGGGG

Coding sequence (CDS)

ATGGGGATGACGAGGTTGATGTTAAGGAGCTTAGCTCTAATGGTGGTGCAAAGGCACACCGCTGCGTCCAAATCCACGAGCCCTTCAAGAACCGGGCAGCAAGTTTGTTTGGTTTGGTCGCCAATTCCGATATGGATTAGCCCACCCAACAAGTCCACACATGCTCCCAGCTTCAGCGTGTCAATGGGGCATGTCCCTTGCTTTGGCGGCGGCGGTGGGCACGGTGTGTTTGGTGATGGCACTACTGGAGCTGGCTTCACTGGTGGTGGTGGGCTAGGCACTGGCACGTACGTTGGTGGCGGTGGTGGTTTGGTTACTGGTGGCTGGACGTATGGGGGAGGAGGCTTGGAGACTGGTGGTTGGACGGTGGAGGAGGCTTGGCTACTGGTGGTTGGACGTAGGGTGGAGGAGGCTTGGATACCGGCGGCTTTGGGACATAGGGAGGAGGAGGGG

Protein sequence

MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSVSMGHVPCFGGGGGHGVFGDGTTGAGFTGGGGLGTGTYVGGGGGLVTGGWTYGGGGLETGGWTVEEAWLLVVGRRVEEAWIPAALGHREEEG
Homology
BLAST of CmoCh01G013430 vs. ExPASy TrEMBL
Match: A0A0A0L1W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620620 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.4e-30
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0

Query: 1  MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
          MGM RL+ RSLALMVV + TAASKSTSPSRTGQQVC V SPIPIWI+PPNKSTHAP+FSV
Sbjct: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60

Query: 61 SMGHVPCFGGGGGHGVFGDGTTGAGFTGGGGLGTGT 97
          SMGHV  FGGGGG GV GDGTTGAGF   GGLGTGT
Sbjct: 61 SMGHVSRFGGGGGQGVDGDGTTGAGF--NGGLGTGT 94

BLAST of CmoCh01G013430 vs. ExPASy TrEMBL
Match: I3SLI2 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 81/126 (64.29%), Postives = 88/126 (69.84%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MGM  LMLRSLALMVVQRHTAASKSTSP+ TGQQVCL   PIP+ I PP +STHAPSF V
Sbjct: 1   MGMMILMLRSLALMVVQRHTAASKSTSPASTGQQVCLALPPIPMCIRPPKRSTHAPSFKV 60

Query: 61  SMGHVPCFGGGGGHGVFGDGTTGAGFTGGGGLGTGTYVGGGGGLVTGGWTYGG---GGLE 120
           S+GHV C GG       GDGTTG    GGGGLG    VGG GG+ TGG   GG   GG+ 
Sbjct: 61  SIGHVGCAGG-------GDGTTG----GGGGLGVS--VGGLGGVTTGGVGVGGVTIGGVG 113

Query: 121 TGGWTV 124
            GG T+
Sbjct: 121 VGGVTI 113

BLAST of CmoCh01G013430 vs. ExPASy TrEMBL
Match: A0A200QZ63 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1315g23 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 76/118 (64.41%), Postives = 80/118 (67.80%), Query Frame = 0

Query: 6   LMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSVSMGHV 65
           L LRSLALMVVQR  AASKSTSPS TGQ   L   PIPI   PPNKSTH PSFSVS+GH+
Sbjct: 2   LRLRSLALMVVQRQIAASKSTSPSSTGQHSSLTLPPIPICTIPPNKSTHPPSFSVSIGHI 61

Query: 66  PCFGGGGGHGVFGDGTT---GAGFTGGGGLGTGTYVGGGGGLVTGGWTYGGGGLETGG 121
            C G GGG G  GDG T   G G T G  +G G  VGGGGGL TG +   GGGL TGG
Sbjct: 62  SCVGCGGGVGGGGDGFTTGGGGGLTTGTSVGGGQGVGGGGGLTTGAF---GGGLTTGG 116

BLAST of CmoCh01G013430 vs. ExPASy TrEMBL
Match: A0A6N2KCG4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS10116 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-18
Identity = 79/125 (63.20%), Postives = 86/125 (68.80%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MG+ RLMLRSLALMVVQRH AASKST PS TGQ   L   PIP+W SPPN STHAP+  V
Sbjct: 1   MGIIRLMLRSLALMVVQRHIAASKSTRPSSTGQHSSLALLPIPMWTSPPNTSTHAPNLRV 60

Query: 61  SMGHVPCFGGG--GGHGVFGDGTTGAGFTGG--GGL--GTGTYVGGGGGLVTGGWTYGGG 120
           SMG V CFGGG  GG G+ G G TG GF GG  GG+  G G + GG GG + GG T G G
Sbjct: 61  SMGQVSCFGGGSIGGTGMIG-GVTG-GFGGGRIGGVTGGFGGFGGGFGGFI-GGVTGGFG 120

BLAST of CmoCh01G013430 vs. ExPASy TrEMBL
Match: A0A445DKV0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g021567 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 71/114 (62.28%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MGM  LMLRS AL+VVQRHTAAS+S SPS TGQ VCL   PIP+ ISPP  ST APSF+ 
Sbjct: 1   MGMMMLMLRSFALIVVQRHTAASRSRSPSSTGQHVCLALPPIPMCISPPRTSTQAPSFNE 60

Query: 61  SMGHVPCF-GGGGGHGVFGDGTTGAGFTGGGGLGTGTYVGGGGGLVTGGWTYGG 114
           SMGHV C  GGGGGHGV   G  G   TGG G   G  + GG G   G  TYGG
Sbjct: 61  SMGHVGCAGGGGGGHGV-SLGGVGGVTTGGVGTYGGGEMMGGVGTTGGNGTYGG 113

BLAST of CmoCh01G013430 vs. NCBI nr
Match: AFK41124.1 (unknown [Lotus japonicus])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 81/126 (64.29%), Postives = 88/126 (69.84%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MGM  LMLRSLALMVVQRHTAASKSTSP+ TGQQVCL   PIP+ I PP +STHAPSF V
Sbjct: 1   MGMMILMLRSLALMVVQRHTAASKSTSPASTGQQVCLALPPIPMCIRPPKRSTHAPSFKV 60

Query: 61  SMGHVPCFGGGGGHGVFGDGTTGAGFTGGGGLGTGTYVGGGGGLVTGGWTYGG---GGLE 120
           S+GHV C GG       GDGTTG    GGGGLG    VGG GG+ TGG   GG   GG+ 
Sbjct: 61  SIGHVGCAGG-------GDGTTG----GGGGLGVS--VGGLGGVTTGGVGVGGVTIGGVG 113

Query: 121 TGGWTV 124
            GG T+
Sbjct: 121 VGGVTI 113

BLAST of CmoCh01G013430 vs. NCBI nr
Match: OVA15711.1 (hypothetical protein BVC80_1315g23 [Macleaya cordata])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 76/118 (64.41%), Postives = 80/118 (67.80%), Query Frame = 0

Query: 6   LMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSVSMGHV 65
           L LRSLALMVVQR  AASKSTSPS TGQ   L   PIPI   PPNKSTH PSFSVS+GH+
Sbjct: 2   LRLRSLALMVVQRQIAASKSTSPSSTGQHSSLTLPPIPICTIPPNKSTHPPSFSVSIGHI 61

Query: 66  PCFGGGGGHGVFGDGTT---GAGFTGGGGLGTGTYVGGGGGLVTGGWTYGGGGLETGG 121
            C G GGG G  GDG T   G G T G  +G G  VGGGGGL TG +   GGGL TGG
Sbjct: 62  SCVGCGGGVGGGGDGFTTGGGGGLTTGTSVGGGQGVGGGGGLTTGAF---GGGLTTGG 116

BLAST of CmoCh01G013430 vs. NCBI nr
Match: RYR63809.1 (hypothetical protein Ahy_A04g021567 [Arachis hypogaea])

HSP 1 Score: 98.2 bits (243), Expect = 6.4e-17
Identity = 71/114 (62.28%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MGM  LMLRS AL+VVQRHTAAS+S SPS TGQ VCL   PIP+ ISPP  ST APSF+ 
Sbjct: 1   MGMMMLMLRSFALIVVQRHTAASRSRSPSSTGQHVCLALPPIPMCISPPRTSTQAPSFNE 60

Query: 61  SMGHVPCF-GGGGGHGVFGDGTTGAGFTGGGGLGTGTYVGGGGGLVTGGWTYGG 114
           SMGHV C  GGGGGHGV   G  G   TGG G   G  + GG G   G  TYGG
Sbjct: 61  SMGHVGCAGGGGGGHGV-SLGGVGGVTTGGVGTYGGGEMMGGVGTTGGNGTYGG 113

BLAST of CmoCh01G013430 vs. NCBI nr
Match: KAB1205160.1 (hypothetical protein CJ030_MR7G022012 [Morella rubra])

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-17
Identity = 74/130 (56.92%), Postives = 80/130 (61.54%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MG+  L+ RSLAL+VVQRHTAASKS SP  TGQ V L   PIP    P +KSTHAP+F V
Sbjct: 38  MGIMILIFRSLALIVVQRHTAASKSASPCSTGQHVSLALLPIPTCTRPLSKSTHAPNFRV 97

Query: 61  SMGHVPCFGGGGGHGVFGDGTTGAGFTG-GGGLGTGTYVGGGGGLVTGGW--TYGGGGLE 120
           SMGHVPC GG       GDGT G G  G GGGLGT T VG GGGL TGG    +   G  
Sbjct: 98  SMGHVPCVGG------VGDGTGGCGTIGVGGGLGT-TGVGVGGGLGTGGGYRRFRNNGRC 157

Query: 121 TGGWTVEEAW 128
             GW     W
Sbjct: 158 HNGWFGHRRW 160

BLAST of CmoCh01G013430 vs. NCBI nr
Match: RYR11509.1 (hypothetical protein Ahy_B04g069028 [Arachis hypogaea])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-16
Identity = 71/116 (61.21%), Postives = 78/116 (67.24%), Query Frame = 0

Query: 1   MGMTRLMLRSLALMVVQRHTAASKSTSPSRTGQQVCLVWSPIPIWISPPNKSTHAPSFSV 60
           MGM  LMLRS AL+VVQRHTAAS+S SPS TGQ VCL   PIP+ +SPP  ST APSF+ 
Sbjct: 1   MGMIMLMLRSFALIVVQRHTAASRSRSPSSTGQHVCLALPPIPMCMSPPRTSTQAPSFNE 60

Query: 61  SMGHVPCF-GGGGGHGVFGDGTTGAGFTGGGGLGTGTYVGGGGGLVTGGWTYGGGG 116
           SMGHV C  GGGGGHGV   G    G T G   G GTY  GGG ++ G  T GG G
Sbjct: 61  SMGHVGCAGGGGGGHGVSLGGV--GGVTTG---GVGTY--GGGEMMGGVGTTGGNG 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1W85.4e-3082.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620620 PE=4 SV=1[more]
I3SLI21.4e-2264.29Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
A0A200QZ635.1e-2064.41Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1315g23 PE=4 SV=1[more]
A0A6N2KCG42.8e-1863.20Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS10116 PE=4 SV=1[more]
A0A445DKV03.1e-1762.28Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g021567 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AFK41124.13.0e-2264.29unknown [Lotus japonicus][more]
OVA15711.11.1e-1964.41hypothetical protein BVC80_1315g23 [Macleaya cordata][more]
RYR63809.16.4e-1762.28hypothetical protein Ahy_A04g021567 [Arachis hypogaea][more]
KAB1205160.18.4e-1756.92hypothetical protein CJ030_MR7G022012 [Morella rubra][more]
RYR11509.11.4e-1661.21hypothetical protein Ahy_B04g069028 [Arachis hypogaea][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G013430.1CmoCh01G013430.1mRNA