CmoCh01G013110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G013110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein
LocationCmo_Chr01: 10402275 .. 10402669 (+)
RNA-Seq ExpressionCmoCh01G013110
SyntenyCmoCh01G013110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATGTAAATTTCTTCGATTCACCTCTTTTTCTTCTCTGTTTTAAATTTTGATTGTTTCGATTTATTAATTGTTCTATTCGATTATGTTTTGTAGTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAG

mRNA sequence

GCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAG

Coding sequence (CDS)

ATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGA

Protein sequence

MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPNDAVQKVVK
Homology
[Close]
BLAST of CmoCh01G013110 vs. ExPASy TrEMBL
Match: A0A6J1FMP5 (uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC111446806 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of CmoCh01G013110 vs. ExPASy TrEMBL
Match: A0A6J1IVQ6 (uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of CmoCh01G013110 vs. ExPASy TrEMBL
Match: A0A0A0L208 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-22
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of CmoCh01G013110 vs. ExPASy TrEMBL
Match: A0A6J1C1U1 (uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006563 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-22
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          M GEEV+GPAGPKVLR LYF GAGFVF IA+NKWRE+E +SLLQQ QKQ L+HQF+E+PN
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of CmoCh01G013110 vs. ExPASy TrEMBL
Match: A0A090ITT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTG+EV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of CmoCh01G013110 vs. NCBI nr
Match: XP_022941532.1 (uncharacterized protein LOC111446806 [Cucurbita moschata] >KAG6607933.1 hypothetical protein SDJN03_01275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of CmoCh01G013110 vs. NCBI nr
Match: XP_022982102.1 (uncharacterized protein LOC111481043 [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of CmoCh01G013110 vs. NCBI nr
Match: KAG7037451.1 (hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of CmoCh01G013110 vs. NCBI nr
Match: XP_023522224.1 (uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIE KSLLQQ+QKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of CmoCh01G013110 vs. NCBI nr
Match: XP_023522217.1 (uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIE KSLLQQ+QKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

[Close]
BLAST of CmoCh01G013110 vs. TAIR 10
Match: AT1G16916.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 8  GPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPNDAVQKVV 67
          GP  PK+LR++YFVGAGF+ T A+NKWRE+E  SLL+Q Q++         P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 K 69
          K
Sbjct: 65 K 65

The following BLAST results are available for this feature:
BLAST of CmoCh01G013110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMP51.6e-29100.00uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC1114468... [more]
A0A6J1IVQ61.0e-2897.06uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043... [more]
A0A0A0L2084.2e-2277.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1[more]
A0A6J1C1U15.5e-2277.94uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A090ITT61.2e-2176.47Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
BLAST of CmoCh01G013110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941532.13.3e-29100.00uncharacterized protein LOC111446806 [Cucurbita moschata] >KAG6607933.1 hypothet... [more]
XP_022982102.12.1e-2897.06uncharacterized protein LOC111481043 [Cucurbita maxima][more]
KAG7037451.12.8e-2898.53hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023522224.12.4e-2795.59uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023522217.11.9e-2495.16uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh01G013110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16916.11.7e-1252.46unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G013110.1CmoCh01G013110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane