CmoCh01G012960 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G012960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 10300600 .. 10302001 (+)
RNA-Seq ExpressionCmoCh01G012960
SyntenyCmoCh01G012960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAACCGTGAAGAAGGTACCTCTGATGGCGATATGATGGGCAGAGGAAACGCTGCTTCAATTCTCCTTCACAACGGTGCAATACCCATTTCCATTTTGTTATCTCTTAGCCCTAATTCATGTCTTGCTTCTTGATTCTTGATTCCTGATTCCGTTTGCATGTTGATGGCGAATGTAATGCCTAGCTGAGGTGTTTTTTTGTAGTGGGTTTGTTGTGTTTTTTGTTCATTTAAGCTTATATGGTTTCTGTGAGATGTATGATGGATTTTGATGCGTTTTGAGCCGGAAACGAAGATTTCTGCAAATGGGTATGAAAGGATTCTTTACATTTTTATTGCGTTCTTCTCGTTTGTAAGATTTATGGAAAAATAGTAATGTTGTTCAGTGATTTATGAGTTTTGGATTCAGAATAGAGAAATTGACACTAGGACACTTAGGAAATGGGAGGCTGATACATATCTGTCTCGTTTTCTATTCTATTCTATTCTATTTGAAATGCGGAGTGTCTAAGAATGCTGGCTATGAAGGGGTCGACAACGCTTCCTTGTCTTGCGACTTTGCTTTTGGTTCGAGTGAAGGAAAAATGGGGGTGGTGGAAGAAGTTAGTCTTTCTTTGGACAAGTAAGATGAGAGCGTAGAAACACCACTTCTTAACGCGCTTGTAAGATTTATGGACGAAGAAAGCAGAAATGTCTCTATCTCGGTAGTCATTCTTTAATGTTTTCGTTTTGCATCGATAAACATTATGGATTGTCTGGATCAATGATGCAATTGACGGATGATCTATGGAACTGTTATAGAATATGGAAGTGCTGGTAACAACGGGATTTTGTCGCTTGCTTTGTGTTATTTCATCGAAGTGAAAATGGCATACAGAGTTTGAAGTAGTTTGGAATGTCAAATTTCTCTTTAAGGCTTCAGCAGCACAAGCGTTAGATGAGTATATTTTAGCACATTGAAATCCTTTATGCCTATTTTATCTGCATATAAAAACATTTTCTCTTGCAGTTTTTCGAGTACCTTCCCAGATGCGTTCGTCGTATATTGCATTCACATTTAATTACATTCTACCAGCGGACGCTCAAAACGCCCCCCCTTGTATAGTGTTTTTTTGAACAAGAAACCAAATTTTTCATTGAATAAATGAAAAAAGACTAATGCTCAAGGAAATAAACTCTGCAAGGGAGTGAAAGAAGAACGATATAACCAAGAAGTATGCAAAAACAAAAGAAACAACAAAGCAACCCAATTATCGTTCATTCAATGTCTGTTGTTATTTGACTTGTGTCCTTTAAATTGGATCTGATTTAAGTTAAACGTTCTTATTGTTTAAATGCTCGAAAGTAATGTTTGATTTCTCATGCTACAGGTCCTGCCTTCTGAAGTAATGTATGTGTAG

mRNA sequence

ATGACTAACCGTGAAGAAGGTACCTCTGATGGCGATATGATGGGCAGAGGAAACGCTGCTTCAATTCTCCTTCACAACGGTGCAATACCCATTTCCATTTTAATAGAGAAATTGACACTAGGACACTTAGGAAATGGGAGGCTGATACATATCTGTCTCGTTTTCTATTCTATTCTATTCTATTTGAAATGCGGAGTGTCTAAGAATGCTGGCTATGAAGGGGTCGACAACGCTTCCTTGTCTTGCGACTTTGCTTTTGGTTCGAGTGAAGGAAAAATGGGGGTGGTGGAAGAAGTCCTGCCTTCTGAAGTAATGTATGTGTAG

Coding sequence (CDS)

ATGACTAACCGTGAAGAAGGTACCTCTGATGGCGATATGATGGGCAGAGGAAACGCTGCTTCAATTCTCCTTCACAACGGTGCAATACCCATTTCCATTTTAATAGAGAAATTGACACTAGGACACTTAGGAAATGGGAGGCTGATACATATCTGTCTCGTTTTCTATTCTATTCTATTCTATTTGAAATGCGGAGTGTCTAAGAATGCTGGCTATGAAGGGGTCGACAACGCTTCCTTGTCTTGCGACTTTGCTTTTGGTTCGAGTGAAGGAAAAATGGGGGTGGTGGAAGAAGTCCTGCCTTCTGAAGTAATGTATGTGTAG

Protein sequence

MTNREEGTSDGDMMGRGNAASILLHNGAIPISILIEKLTLGHLGNGRLIHICLVFYSILFYLKCGVSKNAGYEGVDNASLSCDFAFGSSEGKMGVVEEVLPSEVMYV
Homology
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BLAST of CmoCh01G012960 vs. NCBI nr
Match: KAG7037436.1 (hypothetical protein SDJN02_01062, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MTNREEGTSDGDMMGRGNAASILLHNGAIPISILI 36
          MTNREEGTSDGDMMGRGNAASILLHNGAIPISIL+
Sbjct: 25 MTNREEGTSDGDMMGRGNAASILLHNGAIPISILL 59

The following BLAST results are available for this feature:
BLAST of CmoCh01G012960 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G012960 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G012960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037436.11.3e-0897.14hypothetical protein SDJN02_01062, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh01G012960 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G012960.1CmoCh01G012960.1mRNA