Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTTTAATTTTAAATTGTTTTTATAAAGAAAACTTAAAAAAGAAAAACAATTAATTCAAAAAGTGGACACGAATACGGAGAAAGAGTGTGAAGGACAGCGGTTGTCAACGAACAGAGAAACGGACCTCCTCCAGTTTGCGATGAGATCCGTCGGAAACAGAGCAAACCCTTCATCAACCTCCAATACCTTCACTTTTCTAATTTCCCAACCCTAATTCCCTCATTCAATTTGATTCTTCTCTTTTTGCTTTCAATTTTCCCCTTTTTATCTGTTTTTTCGTTCTTCTCCCTGGTAATTGCAGGTTAAATCCCGATGGGAAAGTTCTCTTCTCGCAAGAAGGGGCGTTCCAAGACTTCTTCATCCCAGGTACTCTCCCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACGGGTAATGTTCTAAGATTATGCTGTAGTTTGGCTTATGAATTCACGAACATATCTGGGAAATCTTTGCTTGGTCGATTTGTATGCTTGAATTTTGAGTTTTTGTGTATGAGCTTCTTCTTCGTCTTTCACTTTTTTAGTTCTGCTTTCCGCTGGCAATTGGTAAATGTGATATTGGTATTGTGGTTGCGGTTTAAAATATGAATGTTTTCTCCATCTCTTGCCTCTCTTACCTCATATACGTTTGTTTTGATGCCGATGTGAATTTGTTTTGCGTCCTTTTCACCTTTTTGGCTCAAACCATGAAGAGAAGTAGGAGAAAGAGTAGGAGTAGTAGGAAACTGAAGTCCATGCGGTATCGCCATGATTCTCCCTCTGGCTCTGACAATGATTCTGAAAGCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGACGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCAAGAAGCGATCTCATGACCGTCAAAGAAGGGATTACTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGAAGAAGAGCAATAAAAAGAAGCGTAAACGAGATGCGAGTGTTCGTGCCACAAGTAGTGACTCTTTGAGCTGCTCGACTTGTGGAGATGGGAGTACAACCAGCAATGAGAGGGAAATCGATAGGCGTAAGGGCAGGTCTAGAAAGAGGAAAGAAAATATGGGGAAGATTGAAAGGAGTCGGTATTGGTCAAAGAGTCATTCGCCATGCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGAATGTCTGTTATGTTGAAAATAACTTTAGACGACTAAGATCTGTAATCGTTGTAGTTGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACTACAAGAAAACGTCACGCATCAACCTGATCATGACCACCCTTCTTTTGGGGATATAAACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTGTATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTACGAAGTCGACAATAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTTGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTCACAGGTTCTCTAGACAAGGTGGAGGGAACGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTATTCTTCACAGCACCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGTATTTGCCATATGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCGAGTCGAATGTTGATTCTCTTACCGAGCAGGCATCTGCCTCTCAGGAATCTATCCAAACAAAGCCATCTAAATCCGACATGGGCGACGGTGAAACCACTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTCGGATCTTCAGCTCACAAGCCATCATCTTCTTCTTCCCTTAATTCTATTTCAGGAGAAAGTCTCTTGAACGATTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACAATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTGAGAATATTGAGTACTGACTAAATTTATATATTCAGCAGGGAGTATAATTGTACTAGTTTTGTTAAGAACTTGGAACGGATCTGCAAATATTCATTTCAGGTTAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGTAGGAGGCAACTCAAGCGGTGACTTAAGATCCATGATTTTGCAGCCTTGTAGGATGCTCCTGTTGCTTGCCATTCCAAAGATTGTGAAGTTTTGGATTAGAATTTTCCATTCGCTTTCTGTGCGAAGGATCTATAAAGCCTTGAAATATGAACAATAATTAGTGCAGCCAATTGGTAGCATTTGTCTGTTAACTTTTCCACGAGAATGATCAATATGACCATTTGATCAAACGAGAAAACTTGGTGATGTTCGGAGCCAGTGATGATTCACACAGCTTGACAAATCTATCTTGAAATTTTGAAGTGATATCGAC
mRNA sequence
AAAGTTTTAATTTTAAATTGTTTTTATAAAGAAAACTTAAAAAAGAAAAACAATTAATTCAAAAAGTGGACACGAATACGGAGAAAGAGTGTGAAGGACAGCGGTTGTCAACGAACAGAGAAACGGACCTCCTCCAGTTTGCGATGAGATCCGTCGGAAACAGAGCAAACCCTTCATCAACCTCCAATACCTTCACTTTTCTAATTTCCCAACCCTAATTCCCTCATTCAATTTGATTCTTCTCTTTTTGCTTTCAATTTTCCCCTTTTTATCTGTTTTTTCGTTCTTCTCCCTGGTAATTGCAGGTTAAATCCCGATGGGAAAGTTCTCTTCTCGCAAGAAGGGGCGTTCCAAGACTTCTTCATCCCAGAGAAGTAGGAGAAAGAGTAGGAGTAGTAGGAAACTGAAGTCCATGCGGTATCGCCATGATTCTCCCTCTGGCTCTGACAATGATTCTGAAAGCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGACGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCAAGAAGCGATCTCATGACCGTCAAAGAAGGGATTACTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGAAGAAGAGCAATAAAAAGAAGCGTAAACGAGATGCGAGTGTTCGTGCCACAAGTAGTGACTCTTTGAGCTGCTCGACTTGTGGAGATGGGAGTACAACCAGCAATGAGAGGGAAATCGATAGGCGTAAGGGCAGGTCTAGAAAGAGGAAAGAAAATATGGGGAAGATTGAAAGGAGTCGGTATTGGTCAAAGAGTCATTCGCCATGCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGAATGTCTGTTATGTTGAAAATAACTTTAGACGACTAAGATCTGTAATCGTTGTAGTTGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACTACAAGAAAACGTCACGCATCAACCTGATCATGACCACCCTTCTTTTGGGGATATAAACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTGTATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTACGAAGTCGACAATAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTTGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTCACAGGTTCTCTAGACAAGGTGGAGGGAACGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTATTCTTCACAGCACCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGTATTTGCCATATGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCGAGTCGAATGTTGATTCTCTTACCGAGCAGGCATCTGCCTCTCAGGAATCTATCCAAACAAAGCCATCTAAATCCGACATGGGCGACGGTGAAACCACTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTCGGATCTTCAGCTCACAAGCCATCATCTTCTTCTTCCCTTAATTCTATTTCAGGAGAAAGTCTCTTGAACGATTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACAATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTTAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGTAGGAGGCAACTCAAGCGGTGACTTAAGATCCATGATTTTGCAGCCTTGTAGGATGCTCCTGTTGCTTGCCATTCCAAAGATTGTGAAGTTTTGGATTAGAATTTTCCATTCGCTTTCTGTGCGAAGGATCTATAAAGCCTTGAAATATGAACAATAATTAGTGCAGCCAATTGGTAGCATTTGTCTGTTAACTTTTCCACGAGAATGATCAATATGACCATTTGATCAAACGAGAAAACTTGGTGATGTTCGGAGCCAGTGATGATTCACACAGCTTGACAAATCTATCTTGAAATTTTGAAGTGATATCGAC
Coding sequence (CDS)
ATGGGAAAGTTCTCTTCTCGCAAGAAGGGGCGTTCCAAGACTTCTTCATCCCAGAGAAGTAGGAGAAAGAGTAGGAGTAGTAGGAAACTGAAGTCCATGCGGTATCGCCATGATTCTCCCTCTGGCTCTGACAATGATTCTGAAAGCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGACGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCAAGAAGCGATCTCATGACCGTCAAAGAAGGGATTACTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGAAGAAGAGCAATAAAAAGAAGCGTAAACGAGATGCGAGTGTTCGTGCCACAAGTAGTGACTCTTTGAGCTGCTCGACTTGTGGAGATGGGAGTACAACCAGCAATGAGAGGGAAATCGATAGGCGTAAGGGCAGGTCTAGAAAGAGGAAAGAAAATATGGGGAAGATTGAAAGGAGTCGGTATTGGTCAAAGAGTCATTCGCCATGCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGAATGTCTGTTATGTTGAAAATAACTTTAGACGACTAAGATCTGTAATCGTTGTAGTTGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACTACAAGAAAACGTCACGCATCAACCTGATCATGACCACCCTTCTTTTGGGGATATAAACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTGTATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTACGAAGTCGACAATAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTTGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTCACAGGTTCTCTAGACAAGGTGGAGGGAACGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTATTCTTCACAGCACCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGTATTTGCCATATGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCGAGTCGAATGTTGATTCTCTTACCGAGCAGGCATCTGCCTCTCAGGAATCTATCCAAACAAAGCCATCTAAATCCGACATGGGCGACGGTGAAACCACTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTCGGATCTTCAGCTCACAAGCCATCATCTTCTTCTTCCCTTAATTCTATTTCAGGAGAAAGTCTCTTGAACGATTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACAATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTTAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGTAGGAGGCAACTCAAGCGGTGA
Protein sequence
MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Homology
BLAST of CmoCh01G012730 vs. ExPASy TrEMBL
Match:
A0A6J1FTH5 (pre-mRNA-splicing factor CWC22 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446687 PE=4 SV=1)
HSP 1 Score: 1112.1 bits (2875), Expect = 0.0e+00
Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0
Query: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTED 60
MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTED
Sbjct: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTED 60
Query: 61 DEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRD 120
DEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRD
Sbjct: 61 DEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRD 120
Query: 121 ASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSL 180
ASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSL
Sbjct: 121 ASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSL 180
Query: 181 CSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSF 240
CSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSF
Sbjct: 181 CSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSF 240
Query: 241 GDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYE 300
GDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYE
Sbjct: 241 GDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYE 300
Query: 301 RKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSP 360
RKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSP
Sbjct: 301 RKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSP 360
Query: 361 VSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ 420
VSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ
Sbjct: 361 VSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ 420
Query: 421 HLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVD 480
HLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVD
Sbjct: 421 HLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVD 480
Query: 481 SLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLN 540
SLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLN
Sbjct: 481 SLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLN 540
Query: 541 SISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
SISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 541 SISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 597
BLAST of CmoCh01G012730 vs. ExPASy TrEMBL
Match:
A0A6J1FN60 (pre-mRNA-splicing factor CWC22 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446687 PE=4 SV=1)
HSP 1 Score: 1085.1 bits (2805), Expect = 0.0e+00
Identity = 579/580 (99.83%), Postives = 580/580 (100.00%), Query Frame = 0
Query: 18 QRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 77
+RSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK
Sbjct: 36 KRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 95
Query: 78 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 137
RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG
Sbjct: 96 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 155
Query: 138 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 197
DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV
Sbjct: 156 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 215
Query: 198 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 257
ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL
Sbjct: 216 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 275
Query: 258 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 317
ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL
Sbjct: 276 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 335
Query: 318 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 377
ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN
Sbjct: 336 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 395
Query: 378 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ 437
GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ
Sbjct: 396 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ 455
Query: 438 HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP 497
HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP
Sbjct: 456 HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP 515
Query: 498 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 557
SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE
Sbjct: 516 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 575
Query: 558 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 576 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 615
BLAST of CmoCh01G012730 vs. ExPASy TrEMBL
Match:
A0A6J1FKY7 (pre-mRNA-splicing factor CWC22 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111446687 PE=4 SV=1)
HSP 1 Score: 967.2 bits (2499), Expect = 3.1e-278
Identity = 530/580 (91.38%), Postives = 531/580 (91.55%), Query Frame = 0
Query: 18 QRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 77
+RSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK
Sbjct: 36 KRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 95
Query: 78 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 137
RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG
Sbjct: 96 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 155
Query: 138 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 197
DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV
Sbjct: 156 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 215
Query: 198 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 257
ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL
Sbjct: 216 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 275
Query: 258 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 317
ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL
Sbjct: 276 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 335
Query: 318 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 377
ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN
Sbjct: 336 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 395
Query: 378 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ 437
GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHL
Sbjct: 396 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHL--------------- 455
Query: 438 HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP 497
ALKPESNVDSLTEQASASQESIQTKP
Sbjct: 456 ----------------------------------ALKPESNVDSLTEQASASQESIQTKP 515
Query: 498 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 557
SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE
Sbjct: 516 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 566
Query: 558 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 576 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 566
BLAST of CmoCh01G012730 vs. ExPASy TrEMBL
Match:
A0A6J1CDR0 (uncharacterized protein LOC111010601 OS=Momordica charantia OX=3673 GN=LOC111010601 PE=4 SV=1)
HSP 1 Score: 762.3 bits (1967), Expect = 1.5e-216
Identity = 458/611 (74.96%), Postives = 498/611 (81.51%), Query Frame = 0
Query: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKS--MRYRHDSPSGSDNDSESSTSLSSSST 60
MGK SRKK RSKTSSSQRSRRK+RSSRKLKS +RYRHDSPS SD D ESSTSLSSSS+
Sbjct: 1 MGK--SRKKERSKTSSSQRSRRKNRSSRKLKSKKLRYRHDSPSCSDTDFESSTSLSSSSS 60
Query: 61 EDDEKVGRSRSKMRKNA---KKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNK- 120
EDDEKVGRSRS KNA KKRAKKRS D Q RD SPHPRKRKHSKR + CE+KK+NK
Sbjct: 61 EDDEKVGRSRSNKLKNAKPGKKRAKKRSRDDQIRDLSPHPRKRKHSKRHDRCEVKKTNKR 120
Query: 121 KKRKRDASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKS 180
KKR+RD SV ATS DSLSCSTCGDGSTTSNE EIDR +GRS KRK N GK ERSRY SKS
Sbjct: 121 KKRRRDVSVSATSRDSLSCSTCGDGSTTSNESEIDRHRGRSGKRKRNRGKTERSRYRSKS 180
Query: 181 HSPCSLCSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPD 240
HSPCSLCSEGSD+QNEVE+ YVENNFRRLRSVIVVVGEE+KL+TFDGNE QE V H PD
Sbjct: 181 HSPCSLCSEGSDYQNEVEDGSYVENNFRRLRSVIVVVGEENKLKTFDGNEQQEEVMHHPD 240
Query: 241 HDHPSFGDINRNDGMSNRELDNLISEEA-------PVIITDNRNSIVVKDDGVQNEGSNN 300
DHPSFGD++ NDGMS RELD + S EA V+I D RN +VVKD GVQNEGSNN
Sbjct: 241 DDHPSFGDMDSNDGMSKRELDRVTSNEASEVENKKEVVIPDIRNFLVVKDGGVQNEGSNN 300
Query: 301 NHGGSTHDHPLYERKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYE 360
NHGG T+DHPL E NG S NTD NCIDLESILRQRALENLRK+K V P+NVET AN +
Sbjct: 301 NHGGVTNDHPLNEGNNG-SGNTDRINCIDLESILRQRALENLRKFKGVPPKNVETSANCQ 360
Query: 361 VDNSNDAKQLDSPVSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMII-ENGVKSTDEMD 420
VDNSNDAKQL SPVS V + SPRD+A ING FS QGGGNAVN MI+ ENGV+ST+ +D
Sbjct: 361 VDNSNDAKQLYSPVSNSVRIKSPRDDAEINGKGFSGQGGGNAVNPMIVEENGVESTNAID 420
Query: 421 SAVASTYDPVYSSQHLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRS 480
SAVAST+DP+YSSQ+LGKIS+ SN MNELKQ ISS+DQE VND+IC DADIC TT+RS
Sbjct: 421 SAVASTHDPIYSSQNLGKISSTSNGMNELKQDISSLDQEAVNDNICQKVDADICSTTSRS 480
Query: 481 NLVIAALKPESNVDSLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGF 540
NLV AAL+P+S VD L +QASA QE IQTKPS SDMG E Q Q Q RNND QNI +GF
Sbjct: 481 NLVYAALRPDSKVDFLVKQASAPQEYIQTKPSISDMGVDEIAQMQIQTRNNDDQNIVNGF 540
Query: 541 GSSAHKPSSSSSLNSISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKR 598
SSAHKP SSSLN SGE+ LN RHESGEGSQFEQKTMSV RGGEMVQVNYKVYIPKR
Sbjct: 541 DSSAHKP--SSSLNYFSGENSLNKPRHESGEGSQFEQKTMSVMRGGEMVQVNYKVYIPKR 600
BLAST of CmoCh01G012730 vs. ExPASy TrEMBL
Match:
A0A6J1F6D1 (uncharacterized protein LOC111442542 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442542 PE=4 SV=1)
HSP 1 Score: 726.9 bits (1875), Expect = 7.0e-206
Identity = 437/611 (71.52%), Postives = 499/611 (81.67%), Query Frame = 0
Query: 1 MGK-FSSRKKGRSKTSSSQRSRRKSRSSRKLKS--MRYRHDSPSGSDNDSESSTSLSSSS 60
MGK SSRKK RSKTSSSQRSRRKS+SSR+LKS +RYRHDSPS SD D ESSTS+SSSS
Sbjct: 1 MGKASSSRKKERSKTSSSQRSRRKSKSSRRLKSKKLRYRHDSPSCSDTDFESSTSVSSSS 60
Query: 61 TEDDEKVGRSRSKMRKN---AKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNK 120
+EDD+KV RSRSK RKN +KKR+KK+SHD Q R+ SPHPRKRKHSKR + E KK+NK
Sbjct: 61 SEDDKKVRRSRSKTRKNSKPSKKRSKKQSHDHQSRECSPHPRKRKHSKRSDRYEAKKTNK 120
Query: 121 KKRKRDASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKS 180
KKR+RDASV AT+SDSL STCGDGS+TS++ EIDRR+GRS KRK NM K E RY SKS
Sbjct: 121 KKRRRDASVGATNSDSLGRSTCGDGSSTSSDSEIDRRRGRSGKRKRNMVKTEGRRYRSKS 180
Query: 181 HSPCSLCSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPD 240
SPCSLCS+GSD QNEVE+ YVEN+ RRL+S+IVVVGEED+L+TF GNE QE VTHQ D
Sbjct: 181 RSPCSLCSDGSDFQNEVEDDSYVENSCRRLKSIIVVVGEEDELKTFVGNEQQEAVTHQLD 240
Query: 241 HDHPSFGDINRNDGMSNRELDNLISEEAP-------VIITDNRNSIVVKDDGVQNEGSNN 300
+HPSFGD+N DG S RELD +IS+EAP ++ DNRNS+++ DDGV+NEGSN
Sbjct: 241 DNHPSFGDMNSKDGTSKRELDYVISKEAPEVESKNKIVTPDNRNSLILNDDGVRNEGSNK 300
Query: 301 NHGGSTHDHPLYERKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYE 360
NHGG T+DH L ERKNGCS NT+ NCIDLESILRQ+ALENLRK+K V PRNVE AN +
Sbjct: 301 NHGGVTNDHSLDERKNGCSGNTESINCIDLESILRQKALENLRKFKGVSPRNVEIIANCK 360
Query: 361 VDNSNDAKQLDSPVSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIE-NGVKSTDEMD 420
V+N+NDAKQL SPVSK VHVT PRD+A IN FSRQ GG+AVNSMI++ NG KSTD +D
Sbjct: 361 VENNNDAKQLISPVSKSVHVTFPRDDAEINVKGFSRQDGGDAVNSMIVKGNGFKSTDAID 420
Query: 421 SAVASTYDPVYSSQHLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRS 480
+AVAS +DPV SSQ+LGKISNGSN MNE KQ ISS+DQEV+ND+IC ADADI TTNRS
Sbjct: 421 TAVASMHDPVCSSQNLGKISNGSNGMNEPKQDISSLDQEVINDNICLKADADIYSTTNRS 480
Query: 481 NLVIAALKPESNVDSLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGF 540
NLVIAA +PES VDS ++AS QE IQTK S SD+ ET QTQTQM NND QNI +GF
Sbjct: 481 NLVIAAFRPESKVDSFIKKASVDQECIQTKSSISDIVVDETAQTQTQMTNNDDQNIRNGF 540
Query: 541 GSSAHKPSSSSSLNSISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKR 598
GSSA+K SSSSLN ISGE+ L+ SR ESGEGSQFEQKTMSV RGGEMVQVNYKVYIPKR
Sbjct: 541 GSSAYK--SSSSLNPISGENRLDKSRQESGEGSQFEQKTMSVMRGGEMVQVNYKVYIPKR 600
BLAST of CmoCh01G012730 vs. NCBI nr
Match:
XP_022941380.1 (pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita moschata])
HSP 1 Score: 1112.1 bits (2875), Expect = 0.0e+00
Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0
Query: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTED 60
MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTED
Sbjct: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTED 60
Query: 61 DEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRD 120
DEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRD
Sbjct: 61 DEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRD 120
Query: 121 ASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSL 180
ASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSL
Sbjct: 121 ASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSL 180
Query: 181 CSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSF 240
CSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSF
Sbjct: 181 CSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSF 240
Query: 241 GDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYE 300
GDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYE
Sbjct: 241 GDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYE 300
Query: 301 RKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSP 360
RKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSP
Sbjct: 301 RKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSP 360
Query: 361 VSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ 420
VSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ
Sbjct: 361 VSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ 420
Query: 421 HLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVD 480
HLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVD
Sbjct: 421 HLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVD 480
Query: 481 SLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLN 540
SLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLN
Sbjct: 481 SLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLN 540
Query: 541 SISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
SISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 541 SISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 597
BLAST of CmoCh01G012730 vs. NCBI nr
Match:
XP_022941379.1 (pre-mRNA-splicing factor CWC22 homolog isoform X1 [Cucurbita moschata])
HSP 1 Score: 1085.1 bits (2805), Expect = 0.0e+00
Identity = 579/580 (99.83%), Postives = 580/580 (100.00%), Query Frame = 0
Query: 18 QRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 77
+RSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK
Sbjct: 36 KRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 95
Query: 78 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 137
RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG
Sbjct: 96 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 155
Query: 138 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 197
DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV
Sbjct: 156 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 215
Query: 198 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 257
ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL
Sbjct: 216 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 275
Query: 258 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 317
ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL
Sbjct: 276 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 335
Query: 318 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 377
ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN
Sbjct: 336 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 395
Query: 378 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ 437
GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ
Sbjct: 396 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ 455
Query: 438 HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP 497
HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP
Sbjct: 456 HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP 515
Query: 498 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 557
SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE
Sbjct: 516 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 575
Query: 558 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 576 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 615
BLAST of CmoCh01G012730 vs. NCBI nr
Match:
KAG7037416.1 (hypothetical protein SDJN02_01042 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 1060.8 bits (2742), Expect = 4.2e-306
Identity = 575/599 (95.99%), Postives = 587/599 (98.00%), Query Frame = 0
Query: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKS--MRYRHDSPSGSDNDSESSTSLSSSST 60
MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKS +RYRHDSPSGSDNDSE+STSLSSSST
Sbjct: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSKKLRYRHDSPSGSDNDSETSTSLSSSST 60
Query: 61 EDDEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRK 120
EDDEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRK
Sbjct: 61 EDDEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRK 120
Query: 121 RDASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPC 180
RDASVRATSSDSL CSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERS+Y S SHSPC
Sbjct: 121 RDASVRATSSDSLCCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSQYRSNSHSPC 180
Query: 181 SLCSEGSDHQNEVENVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHP 240
SLCSEGSDHQNEVE+VCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHP
Sbjct: 181 SLCSEGSDHQNEVEDVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHP 240
Query: 241 SFGDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPL 300
SFGDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVK+DGVQNEGSNNNHGGSTHDHPL
Sbjct: 241 SFGDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKEDGVQNEGSNNNHGGSTHDHPL 300
Query: 301 YERKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLD 360
YERKNGCS NT+DTNCIDLESILRQRALENLRKYKRVLPRNVETP+N EVDNSNDAKQLD
Sbjct: 301 YERKNGCSGNTNDTNCIDLESILRQRALENLRKYKRVLPRNVETPSNCEVDNSNDAKQLD 360
Query: 361 SPVSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYS 420
SPVSK HVTSPRDEAGI+G+RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYS
Sbjct: 361 SPVSKSAHVTSPRDEAGIDGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYS 420
Query: 421 SQHLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESN 480
SQ LGKISNGSNDMNELK+HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESN
Sbjct: 421 SQRLGKISNGSNDMNELKKHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESN 480
Query: 481 VDSLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSS 540
VDSLTEQASASQESIQTKPSKSDMGD ET QTQTQMRNNDVQNIGDGFGSSAHKPSSSSS
Sbjct: 481 VDSLTEQASASQESIQTKPSKSDMGDDETAQTQTQMRNNDVQNIGDGFGSSAHKPSSSSS 540
Query: 541 LNSISGESLLNDSRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
LNSISGE+LLN+SRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 541 LNSISGENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 599
BLAST of CmoCh01G012730 vs. NCBI nr
Match:
XP_023525531.1 (uncharacterized protein LOC111789118 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1035.8 bits (2677), Expect = 1.5e-298
Identity = 559/582 (96.05%), Postives = 569/582 (97.77%), Query Frame = 0
Query: 18 QRSRRKSRSSRKLKS--MRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNA 77
+RSRRKSRSSRKLKS +RYRHDSPSGSDND ESSTSLSSSSTEDDEKVGRSRSKMRKNA
Sbjct: 36 KRSRRKSRSSRKLKSKKLRYRHDSPSGSDNDFESSTSLSSSSTEDDEKVGRSRSKMRKNA 95
Query: 78 KKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCST 137
KKRAKKRSHDRQRRDYSPHPRKRKHSKRDEC EMKKSNKKKRKRDASVRATSSDSLSCST
Sbjct: 96 KKRAKKRSHDRQRRDYSPHPRKRKHSKRDECWEMKKSNKKKRKRDASVRATSSDSLSCST 155
Query: 138 CGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVC 197
CGDGSTTSNEREIDRRKGRSR+RKENMGKIERSRY SKSHSPCSLCSEGSDHQNEVE+VC
Sbjct: 156 CGDGSTTSNEREIDRRKGRSRRRKENMGKIERSRYRSKSHSPCSLCSEGSDHQNEVEDVC 215
Query: 198 YVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELD 257
YVENNFRRLRSVIV+VGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELD
Sbjct: 216 YVENNFRRLRSVIVIVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELD 275
Query: 258 NLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCI 317
NLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCI
Sbjct: 276 NLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCI 335
Query: 318 DLESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAG 377
DLESILRQRALENLRKYKRVLPRNVETPAN EVDNSNDAKQLDSPVSK VHVTSPRDEAG
Sbjct: 336 DLESILRQRALENLRKYKRVLPRNVETPANCEVDNSNDAKQLDSPVSKSVHVTSPRDEAG 395
Query: 378 INGHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNEL 437
ING RFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQ LGK+SNGSND+NEL
Sbjct: 396 INGDRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQRLGKVSNGSNDLNEL 455
Query: 438 KQHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQT 497
KQHISSVDQEVVNDSIC ADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQT
Sbjct: 456 KQHISSVDQEVVNDSICQKADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQT 515
Query: 498 KPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHES 557
KPSKS+MGDGET QTQTQMRNNDVQNIGDGFGS AHKPSSSSSLNSISGE+LLN+SRHES
Sbjct: 516 KPSKSNMGDGETAQTQTQMRNNDVQNIGDGFGSPAHKPSSSSSLNSISGENLLNESRHES 575
Query: 558 GEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
GEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 576 GEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 617
BLAST of CmoCh01G012730 vs. NCBI nr
Match:
XP_022941381.1 (pre-mRNA-splicing factor CWC22 homolog isoform X3 [Cucurbita moschata])
HSP 1 Score: 967.2 bits (2499), Expect = 6.4e-278
Identity = 530/580 (91.38%), Postives = 531/580 (91.55%), Query Frame = 0
Query: 18 QRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 77
+RSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK
Sbjct: 36 KRSRRKSRSSRKLKSMRYRHDSPSGSDNDSESSTSLSSSSTEDDEKVGRSRSKMRKNAKK 95
Query: 78 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 137
RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG
Sbjct: 96 RAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLSCSTCG 155
Query: 138 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 197
DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV
Sbjct: 156 DGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWSKSHSPCSLCSEGSDHQNEVENVCYV 215
Query: 198 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 257
ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL
Sbjct: 216 ENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNL 275
Query: 258 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 317
ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL
Sbjct: 276 ISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNCIDL 335
Query: 318 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 377
ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN
Sbjct: 336 ESILRQRALENLRKYKRVLPRNVETPANYEVDNSNDAKQLDSPVSKLVHVTSPRDEAGIN 395
Query: 378 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHLGKISNGSNDMNELKQ 437
GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHL
Sbjct: 396 GHRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQHL--------------- 455
Query: 438 HISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKP 497
ALKPESNVDSLTEQASASQESIQTKP
Sbjct: 456 ----------------------------------ALKPESNVDSLTEQASASQESIQTKP 515
Query: 498 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 557
SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE
Sbjct: 516 SKSDMGDGETTQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGESLLNDSRHESGE 566
Query: 558 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 598
GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
Sbjct: 576 GSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR 566
BLAST of CmoCh01G012730 vs. TAIR 10
Match:
AT5G53930.1 (unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 71.6 bits (174), Expect = 2.4e-12
Identity = 181/615 (29.43%), Postives = 267/615 (43.41%), Query Frame = 0
Query: 1 MGKFSSRKKGRSKTSSSQRSRRKSRSSR-KLKSMRYRHDSPSGSDNDSESSTSLSSSSTE 60
MGK SS K +S+ RS +K +S R K K +R D S +DS SL SSS +
Sbjct: 1 MGKSSSSSKIIKDSSNKLRSVKKKKSKRNKSKKIRRIKDESESSGSDS----SLYSSSED 60
Query: 61 DDEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPR---KRKHSKR-DECCEMKKS--- 120
D + + RSK+ +KKR++KR + D S R K+K SKR DE KK
Sbjct: 61 DYRRKKKRRSKL---SKKRSRKRYSSSESDDDSDDDRLLKKKKRSKRKDENVGKKKKKVV 120
Query: 121 NKKKRKRDASVRATSSDSLSCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSRYWS 180
++K+RKRD S +TSS+ + DGS E D K SR R +GK++ SR S
Sbjct: 121 SRKRRKRDLSSSSTSSE----QSDNDGS------ESDDGKRWSRDRGRRLGKVKDSR--S 180
Query: 181 KSHSPCSLCSEGSDHQNEVENVCYVENNFRRLRSVIVV---VGEEDKLETFDGNELQENV 240
+S SE D + E+ E N RRL+S++VV G ++ E D
Sbjct: 181 RSRDELEGESEEPDECWQGEDEVIPEKNPRRLKSIVVVSYNYGNGERKEEDD-------- 240
Query: 241 THQPDHDHPSFGDINRNDGMSNRELD-NLISEEAPVIITDNRNSIVVKDDGVQNEGSNNN 300
D+ G NREL + S+E D+ + I D+G +
Sbjct: 241 -----------RDVYMTRGGGNRELGYSEDSDEMDGESIDSYSRIRADDNGFGEYNKSET 300
Query: 301 HGGSTHDHPLYERKNGCSVNTDDTNCIDLESILRQRALENLRKYKRVLPRNVETPANYEV 360
S D+ L DD DLE+IL++RALENL++++ V
Sbjct: 301 SKVSHTDNSL----------KDD----DLEAILKKRALENLKRFRGV------------T 360
Query: 361 DNSNDAKQLDSPVSKLVHVTSPRDEAGINGHRFSRQGGGNAVNSMIIENGVKSTDEMDSA 420
S AK+ S VS+ + ++ H Q DSA
Sbjct: 361 QKSGIAKKEVSSVSEGEPMQIESEKVESQDHDLMEQ------------------KLCDSA 420
Query: 421 VASTYDPVYSSQHLGKISNGSNDMNELKQHISSVDQEVVNDSICHMADADICPTTNRSNL 480
V+ + +S+ + + N L S DQ+ D+ + + T + L
Sbjct: 421 VSKDLE---NSEKILHVINVKESGTALANSASQQDQQ-SGDTAKVKVSSGLSSCTTKRKL 480
Query: 481 VIAALKPESNVDSLTEQASASQESIQTKPSKSDMGDGETTQTQTQMRNNDVQNIGDGFGS 540
V L +S + ++AS SQ++ S + T + N+ ++I S
Sbjct: 481 VRPVLSKDSLNLASKKEASGSQDAEAESIDGSTVDKNCLESTLALVTKNEGEHIEPTKVS 529
Query: 541 SAHKPSSSSSLNSISGESLLNDSR------HESGEGSQFEQKTMSVKRGGEMVQVNYKVY 598
S SSS ++ + + S+ E+ + SQ+EQKTM+V RGGEMVQV+YKVY
Sbjct: 541 STLNAESSSHADTEEVDEVKGGSQSEQKTIDETKDESQYEQKTMTVMRGGEMVQVSYKVY 529
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FTH5 | 0.0e+00 | 100.00 | pre-mRNA-splicing factor CWC22 homolog isoform X2 OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1FN60 | 0.0e+00 | 99.83 | pre-mRNA-splicing factor CWC22 homolog isoform X1 OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1FKY7 | 3.1e-278 | 91.38 | pre-mRNA-splicing factor CWC22 homolog isoform X3 OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1CDR0 | 1.5e-216 | 74.96 | uncharacterized protein LOC111010601 OS=Momordica charantia OX=3673 GN=LOC111010... | [more] |
A0A6J1F6D1 | 7.0e-206 | 71.52 | uncharacterized protein LOC111442542 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
Match Name | E-value | Identity | Description | |
XP_022941380.1 | 0.0e+00 | 100.00 | pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita moschata] | [more] |
XP_022941379.1 | 0.0e+00 | 99.83 | pre-mRNA-splicing factor CWC22 homolog isoform X1 [Cucurbita moschata] | [more] |
KAG7037416.1 | 4.2e-306 | 95.99 | hypothetical protein SDJN02_01042 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_023525531.1 | 1.5e-298 | 96.05 | uncharacterized protein LOC111789118 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
XP_022941381.1 | 6.4e-278 | 91.38 | pre-mRNA-splicing factor CWC22 homolog isoform X3 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
AT5G53930.1 | 2.4e-12 | 29.43 | unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins i... | [more] |