CmoCh01G012690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G012690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	pre-mRNA-splicing factor CWC22 homolog
Location	Cmo_Chr01: 10148412 .. 10149146 (+)
RNA-Seq Expression	CmoCh01G012690
Synteny	CmoCh01G012690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCGCCGGGAACAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATCAGGATTCCGATTTCGAATTCGGATCCATTACTCCAGATTCTCCTTCCACTTTCAACAACTCGCCGGCGGATCATCTGTTCGTGAACGGTCGTCTTTTGCCTCACTCTTTTCCGCCGCAACCGATTGGTGTTTACGCTGTCGATCGGACGAGTAGCGTCGGGAGTAAGGACTCGATCATGTCGTCGCGGAGTAATAGCACTAATAGTAGGAGCAGTAGCAGTTGCGGTAGCAGTACTAGCGCGAGGACGAGTTCGAGCGAAAGTAATAATGTCGACAGATCCTCCAGATTCTCTTCGCATCAGAAGAAATCTCCGAAATCTTCTGTTTCCGCTCAAGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTTCCGGTTCCGACGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGTGGAGAAAATTGGGGGAAAATCGGATTTGAGGCGGAACAAAAAGCGAATAGAGAAGACGACGGCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAAGAATGCCATGCGATCGAACCATCGAGAAAGGATGAGATTGTGATGAGGAAGACGAAATTGACGAAACCGAAGAGTTATTGA

mRNA sequence

ATGGAGTCTCGCCGGGAACAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATCAGGATTCCGATTTCGAATTCGGATCCATTACTCCAGATTCTCCTTCCACTTTCAACAACTCGCCGGCGGATCATCTGTTCGTGAACGGTCGTCTTTTGCCTCACTCTTTTCCGCCGCAACCGATTGGTGTTTACGCTGTCGATCGGACGAGTAGCGTCGGGAGTAAGGACTCGATCATGTCGTCGCGGAGTAATAGCACTAATAGTAGGAGCAGTAGCAGTTGCGGTAGCAGTACTAGCGCGAGGACGAGTTCGAGCGAAAGTAATAATGTCGACAGATCCTCCAGATTCTCTTCGCATCAGAAGAAATCTCCGAAATCTTCTGTTTCCGCTCAAGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTTCCGGTTCCGACGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGTGGAGAAAATTGGGGGAAAATCGGATTTGAGGCGGAACAAAAAGCGAATAGAGAAGACGACGGCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAAGAATGCCATGCGATCGAACCATCGAGAAAGGATGAGATTGTGATGAGGAAGACGAAATTGACGAAACCGAAGAGTTATTGA

Coding sequence (CDS)

ATGGAGTCTCGCCGGGAACAGAGCTCCTCCGGCGAGATCTTCTCGTTCCCGAGCACTCCGGTTCAGGATCAGGATCAGGATTCCGATTTCGAATTCGGATCCATTACTCCAGATTCTCCTTCCACTTTCAACAACTCGCCGGCGGATCATCTGTTCGTGAACGGTCGTCTTTTGCCTCACTCTTTTCCGCCGCAACCGATTGGTGTTTACGCTGTCGATCGGACGAGTAGCGTCGGGAGTAAGGACTCGATCATGTCGTCGCGGAGTAATAGCACTAATAGTAGGAGCAGTAGCAGTTGCGGTAGCAGTACTAGCGCGAGGACGAGTTCGAGCGAAAGTAATAATGTCGACAGATCCTCCAGATTCTCTTCGCATCAGAAGAAATCTCCGAAATCTTCTGTTTCCGCTCAAGTGTACGGATCGTCTCAGAGATGGCAGTTCATCGCGTCGGTTCCGGTTCCGACGACGCTGAGCCGGGAGAATTCGAGGAGGAAGAAGGCCGTGGAGAAAATTGGGGGAAAATCGGATTTGAGGCGGAACAAAAAGCGAATAGAGAAGACGACGGCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATATGTGGTTCGGAAGGAAGGTTTTCCGGTGGATTATTCTGGTTTGTAAAGAATGCCATGCGATCGAACCATCGAGAAAGGATGAGATTGTGATGAGGAAGACGAAATTGACGAAACCGAAGAGTTATTGA

Protein sequence

MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPHSFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSSRFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTKPKSY

Homology

[Close]

BLAST of CmoCh01G012690 vs. ExPASy TrEMBL
Match: A0A6J1FSH9 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446467 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.3e-121
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120
           SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180
           RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180

Query: 181 KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK 240
           KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK
Sbjct: 181 KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK 240

Query: 241 PKSY 245
           PKSY
Sbjct: 241 PKSY 244

[Close]

BLAST of CmoCh01G012690 vs. ExPASy TrEMBL
Match: A0A6J1J3G5 (pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480935 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.4e-115
Identity = 240/245 (97.96%), Postives = 240/245 (97.96%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120
           SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180
           RFSSHQKKSPKSSVSAQVYGSSQRWQFIAS  VP TLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIAS--VPATLSRENSRRKKAVEKIGGKSDLRRN 180

Query: 181 KKRIEKTTAR-KKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLT 240
           KKR EKTTAR KKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLT
Sbjct: 181 KKRTEKTTARKKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLT 240

Query: 241 KPKSY 245
           KPKSY
Sbjct: 241 KPKSY 243

[Close]

BLAST of CmoCh01G012690 vs. ExPASy TrEMBL
Match: A0A5D3DWZ9 (Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001730 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.9e-96
Identity = 215/260 (82.69%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRRE  SS EIFSFPSTPVQDQD D DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRRENGSSAEIFSFPSTPVQDQDSD-DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVD-------RTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSES 120
           SFPPQPI VYAVD       RTSSVGSKDS +SSRSNSTNSRSSSSCGSSTSARTSSS++
Sbjct: 61  SFPPQPISVYAVDVASRQTSRTSSVGSKDSFLSSRSNSTNSRSSSSCGSSTSARTSSSDN 120

Query: 121 NNVD-----RSSRFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 180
           NN +     RSSRFSS+QKKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 121 NNSNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 180

Query: 181 EKIGGKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240
           EKIGGKSDLRRNK+R EKT+  +KKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK
Sbjct: 181 EKIGGKSDLRRNKRRTEKTSTARKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240

Query: 241 DEIVMRKTKL-----TKPKS 244
           DEI  RK+KL     TKP+S
Sbjct: 241 DEIA-RKSKLTTTTTTKPQS 258

[Close]

BLAST of CmoCh01G012690 vs. ExPASy TrEMBL
Match: A0A1S3CKA5 (probable membrane-associated kinase regulator 1 OS=Cucumis melo OX=3656 GN=LOC103501769 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.9e-96
Identity = 215/260 (82.69%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRRE  SS EIFSFPSTPVQDQD D DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRRENGSSAEIFSFPSTPVQDQDSD-DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVD-------RTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSES 120
           SFPPQPI VYAVD       RTSSVGSKDS +SSRSNSTNSRSSSSCGSSTSARTSSS++
Sbjct: 61  SFPPQPISVYAVDVASRQTSRTSSVGSKDSFLSSRSNSTNSRSSSSCGSSTSARTSSSDN 120

Query: 121 NNVD-----RSSRFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 180
           NN +     RSSRFSS+QKKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 121 NNSNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 180

Query: 181 EKIGGKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240
           EKIGGKSDLRRNK+R EKT+  +KKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK
Sbjct: 181 EKIGGKSDLRRNKRRTEKTSTARKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240

Query: 241 DEIVMRKTKL-----TKPKS 244
           DEI  RK+KL     TKP+S
Sbjct: 241 DEIA-RKSKLTTTTTTKPQS 258

[Close]

BLAST of CmoCh01G012690 vs. ExPASy TrEMBL
Match: A0A0A0L251 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92
Identity = 212/259 (81.85%), Postives = 224/259 (86.49%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRRE  SS EIFSFPSTPV   DQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 3   MESRRENGSSAEIFSFPSTPV--LDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 62

Query: 61  SFPPQPIGVYAVD-------RTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSES 120
           SFPPQPI VYAVD       RTSSVGSKDS MSSRSNSTNSRSSSSCGSSTSARTSSS++
Sbjct: 63  SFPPQPISVYAVDLASRQTSRTSSVGSKDSFMSSRSNSTNSRSSSSCGSSTSARTSSSDN 122

Query: 121 NNVD-----RSSRFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 180
           +N +     RSSRFSS+QKKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 123 SNNNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 182

Query: 181 EKIGGKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240
           EKIGGKSDLRR K+R EKT+   +KKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK
Sbjct: 183 EKIGGKSDLRRKKRRAEKTST-ARKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 242

Query: 241 DEIVMRKTKL----TKPKS 244
           DEI  RK+KL    TKP+S
Sbjct: 243 DEIA-RKSKLTTMTTKPQS 257

[Close]

BLAST of CmoCh01G012690 vs. NCBI nr
Match: XP_022941070.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata])

HSP 1 Score: 443.4 bits (1139), Expect = 1.3e-120
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120
           SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180
           RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180

Query: 181 KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK 240
           KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK
Sbjct: 181 KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK 240

Query: 241 PKSY 245
           PKSY
Sbjct: 241 PKSY 244

[Close]

BLAST of CmoCh01G012690 vs. NCBI nr
Match: XP_023525336.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885.1 hypothetical protein SDJN03_01227, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037411.1 hypothetical protein SDJN02_01037, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 441.4 bits (1134), Expect = 5.0e-120
Identity = 243/244 (99.59%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120
           SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180
           RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180

Query: 181 KKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK 240
           KKR EKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK
Sbjct: 181 KKRTEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLTK 240

Query: 241 PKSY 245
           PKSY
Sbjct: 241 PKSY 244

[Close]

BLAST of CmoCh01G012690 vs. NCBI nr
Match: XP_022981938.1 (pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima])

HSP 1 Score: 425.6 bits (1093), Expect = 2.8e-115
Identity = 240/245 (97.96%), Postives = 240/245 (97.96%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120
           SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS
Sbjct: 61  SFPPQPIGVYAVDRTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSESNNVDRSS 120

Query: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKIGGKSDLRRN 180
           RFSSHQKKSPKSSVSAQVYGSSQRWQFIAS  VP TLSRENSRRKKAVEKIGGKSDLRRN
Sbjct: 121 RFSSHQKKSPKSSVSAQVYGSSQRWQFIAS--VPATLSRENSRRKKAVEKIGGKSDLRRN 180

Query: 181 KKRIEKTTAR-KKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLT 240
           KKR EKTTAR KKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLT
Sbjct: 181 KKRTEKTTARKKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEIVMRKTKLT 240

Query: 241 KPKSY 245
           KPKSY
Sbjct: 241 KPKSY 243

[Close]

BLAST of CmoCh01G012690 vs. NCBI nr
Match: XP_038899281.1 (probable membrane-associated kinase regulator 1 [Benincasa hispida])

HSP 1 Score: 364.0 bits (933), Expect = 1.0e-96
Identity = 220/259 (84.94%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRRE+SSSGEIFSFPSTPV  QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRREKSSSGEIFSFPSTPV--QDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVD------RTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSE-- 120
           SFPPQPIGVY VD      RTSSVGSKDS MSSRSNSTNSRSSSSCGSSTSARTSSS+  
Sbjct: 61  SFPPQPIGVYTVDVSRQTSRTSSVGSKDSFMSSRSNSTNSRSSSSCGSSTSARTSSSDNN 120

Query: 121 SNNVD-RSSRFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAVEKI 180
           +NNVD RSSRFSS+QKKS KSSVSAQVYGSSQRWQFIASV VP TLSRENSRRKK+VEKI
Sbjct: 121 NNNVDIRSSRFSSYQKKSQKSSVSAQVYGSSQRWQFIASVSVPVTLSRENSRRKKSVEKI 180

Query: 181 GGKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEI 240
           GGKSDLRR K+R EKT+   +KKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDE+
Sbjct: 181 GGKSDLRRKKRRTEKTST-ARKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRKDEV 240

Query: 241 V-----MRKTK--LTKPKS 244
           V     +RKTK   TKPKS
Sbjct: 241 VRKDEIVRKTKSTTTKPKS 256

[Close]

BLAST of CmoCh01G012690 vs. NCBI nr
Match: XP_008463678.1 (PREDICTED: probable membrane-associated kinase regulator 1 [Cucumis melo] >KAA0066822.1 putative membrane-associated kinase regulator 1 [Cucumis melo var. makuwa] >TYK27969.1 putative membrane-associated kinase regulator 1 [Cucumis melo var. makuwa])

HSP 1 Score: 362.1 bits (928), Expect = 3.8e-96
Identity = 215/260 (82.69%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60
           MESRRE  SS EIFSFPSTPVQDQD D DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH
Sbjct: 1   MESRRENGSSAEIFSFPSTPVQDQDSD-DFEFGSITPDSPSTFNNSPADHLFVNGRLLPH 60

Query: 61  SFPPQPIGVYAVD-------RTSSVGSKDSIMSSRSNSTNSRSSSSCGSSTSARTSSSES 120
           SFPPQPI VYAVD       RTSSVGSKDS +SSRSNSTNSRSSSSCGSSTSARTSSS++
Sbjct: 61  SFPPQPISVYAVDVASRQTSRTSSVGSKDSFLSSRSNSTNSRSSSSCGSSTSARTSSSDN 120

Query: 121 NNVD-----RSSRFSSHQKKSPKSSVSAQVYGSSQRWQFIASVPVPTTLSRENSRRKKAV 180
           NN +     RSSRFSS+QKKS KSSVSAQVYGS QRWQFIASV VPT+LSRENSRRKK+V
Sbjct: 121 NNSNNNLEIRSSRFSSYQKKSQKSSVSAQVYGSCQRWQFIASVSVPTSLSRENSRRKKSV 180

Query: 181 EKIGGKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240
           EKIGGKSDLRRNK+R EKT+  +KKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK
Sbjct: 181 EKIGGKSDLRRNKRRTEKTSTARKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIEPSRK 240

Query: 241 DEIVMRKTKL-----TKPKS 244
           DEI  RK+KL     TKP+S
Sbjct: 241 DEIA-RKSKLTTTTTTKPQS 258

[Close]

BLAST of CmoCh01G012690 vs. TAIR 10
Match: AT3G15250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53163.1); Has 409 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 22; Metazoa - 178; Fungi - 77; Plants - 38; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-13
Identity = 82/232 (35.34%), Postives = 111/232 (47.84%), Query Frame = 0


Query: 29  DFEFGSITPDSPST---FNNSPADHLFVNGRLLPHSFPPQPIGVYAVDRTSSVGSKDSIM 88
           +FEFGS+TP SPS      NSPADHLF NGRLLPH+FP       ++    S+ S  S  
Sbjct: 16  EFEFGSLTPTSPSQDSFSENSPADHLFFNGRLLPHAFP----AASSIYTKRSISSTTSEY 75

Query: 89  SSRSNSTNSRS---SSSCGSSTSARTSSSESN--------------------------NV 148
           +SR NSTNS S   S++  +S S RTS S SN                          N 
Sbjct: 76  TSRCNSTNSSSSFGSNNSSTSQSPRTSYSTSNKNNSPINQEPLDLKLKPPISRCDKTVNT 135

Query: 149 DRSSRFSS--HQKKSPKSSVSAQVYG--SSQRWQFIASVPVPTTLSRENSRRKKAVEKIG 208
             SS +SS  H+++      +  +Y   SSQRWQ+I  VPV          R     ++G
Sbjct: 136 MSSSSYSSPQHKRRKAMEMATTSLYRSYSSQRWQYITPVPV----------RMSGGIRVG 195

Query: 209 GKSDLRRNKKRIEKTTARKKKKKKKKKKKNMWFGRKVFRWIILVCKECHAIE 225
           G         R +K    +KK ++++  + M   RK+    I VC+ECHA+E
Sbjct: 196 G---------RKKKAVRVRKKTEERRVSRVMKLWRKLLMAAIFVCRECHALE 224

[Close]

BLAST of CmoCh01G012690 vs. TAIR 10
Match: AT1G53163.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 315 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-11
Identity = 91/296 (30.74%), Postives = 139/296 (46.96%), Query Frame = 0


Query: 2   ESRREQSSSGEIFSFPSTPVQDQDQDSDFEFGSITPDSPST---FNNSPADHLFVNGRLL 61
           ++R+   +SGE  + P T + +    SDFEFGS+TP SPS      NSPADHLF+NGRLL
Sbjct: 3   DNRKTTPNSGE--TKPETSL-ETSLSSDFEFGSLTPTSPSQDPFSENSPADHLFLNGRLL 62

Query: 62  PHSFPPQPIGVYAVDRTSSVGS-KDSIMSSRSNSTNSRSS-----SSCG----------- 121
           PHSFP   I   +V RT+S  + +    SSRS+ ++S +S     S+C            
Sbjct: 63  PHSFPTSTITTRSVSRTTSENTFRSDSWSSRSSDSSSPTSYTPRTSTCNIFKITSSSTGH 122

Query: 122 ---------------------SSTSARTSSSES-------------------------NN 181
                                +++S +T++  S                         N 
Sbjct: 123 GKETNITCFGTRSEEIMCLRPATSSKKTNTCISKEYYHKPSLILDLKKRPPVENGKAVNT 182

Query: 182 VDRSSRFSSHQKKSPKSSVSAQVYGS-SQRWQFIASVPVPTTLSRENSRRKKAVE-KIGG 226
            ++ S     ++K     V+AQ+YGS S+RWQ I  V       RE S + K    K+GG
Sbjct: 183 TNKVSYLPQCKRKKATEIVTAQLYGSYSRRWQHITPV-----FKREGSVKSKGGGIKVGG 242

The following BLAST results are available for this feature:

BLAST of CmoCh01G012690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G012690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSH9	6.3e-121	100.00	pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1J3G5	1.4e-115	97.96	pre-mRNA-splicing factor CWC22 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114809...	[more]
A0A5D3DWZ9	1.9e-96	82.69	Putative membrane-associated kinase regulator 1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CKA5	1.9e-96	82.69	probable membrane-associated kinase regulator 1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L251	1.2e-92	81.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631560 PE=4 SV=1	[more]

BLAST of CmoCh01G012690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941070.1	1.3e-120	100.00	pre-mRNA-splicing factor CWC22 homolog [Cucurbita moschata]	[more]
XP_023525336.1	5.0e-120	99.59	pre-mRNA-splicing factor CWC22 homolog [Cucurbita pepo subsp. pepo] >KAG6607885....	[more]
XP_022981938.1	2.8e-115	97.96	pre-mRNA-splicing factor CWC22 homolog [Cucurbita maxima]	[more]
XP_038899281.1	1.0e-96	84.94	probable membrane-associated kinase regulator 1 [Benincasa hispida]	[more]
XP_008463678.1	3.8e-96	82.69	PREDICTED: probable membrane-associated kinase regulator 1 [Cucumis melo] >KAA00...	[more]

BLAST of CmoCh01G012690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15250.1	1.5e-13	35.34	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G53163.1	2.4e-11	30.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G012690.1	CmoCh01G012690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019210	kinase inhibitor activity