CmoCh01G012180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G012180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 9812275 .. 9816338 (-)
RNA-Seq ExpressionCmoCh01G012180
SyntenyCmoCh01G012180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCTTGTCATTTTCCCTCTTTACGTTCTTCGTCAGAAATTCGTTCCTGAACATCCGATCTGCAAGCTTCAAGCCGAGACGAATTCATTTTGAATTCTCTCTTTTTCGATCGTTTCAATCTCAGCTAAACCGGAAATCGACTTGCATTCTTGAAGAGTCGGAAATGGCGAGTTCGGTAAGTTGATTAATCCATGTCTTTTAACAATTTTTATCTTTCTATTTCGTCATTTGTATCATTTATTCAATTTCAGTTTTGATTTATCTTTCTATTTCGTCATTTGTATCATTTATTCAATTTCAGTTTTGACATATTGTGTGCATTGTTATGCTTGGTATGATATTAAGAATGAGAAATAGAATTGGGAAGGTATATATTATCATTGATATTGATATCCTTTAAATAGGATACAAAGAGTACAAATGAGGAAAATATAAAATAATTAAATACTGAGAATAAAATAAAATATACTATAAATCAAATCATAAATGGAAGAATATTAAGATATAATACGTAAGATATATTCCATAAATAATTATCTCGAACATATGAGTATACAATAGTTACAAGAGTATGAGGAATAAATCAAGTTTGATTCATCTGTTTGTCTTCTGATTTGAGCATACTCTTAAACCATTGAACGGATGCCTTTGGAATCCTTGTGAGATTGTTCTTGTAGTCAATATAGTAGAGTCCAAATCGGACGGTGTATCCCATGTTCCACTCCCAGTTATCGAGCAGCGACCACGCGAAGTAGCCTTGTACATTGCAGCCTTCTTCCCTGGATTTATTTAAGGATGCCAAAAGATTTAGTGTTGTTGAATCAATCCGGTGAAATTTCATTTAATAAAGGATTATCATTAGCATTTTGAGTTGTTATCACCTAATGGCAGTGGATAGATTTGAGAGATAATCTCTGTGGTAGCTTATTCTCTTATCATCCTGTAATGCCTTTTCCAAAGGTATGGACCGTTTGTTTGGATCATCCATTCCTGTCAGAACGAGTTGAAACTTGTGTCATTTTGTGAAATTTTTTAGTTCAAAGTTTGGAACTATCATTACTCACCGTTCTCTGTTATAATCACTGGAGGGTTCCCATACTTGTATTTCAAATAAATTGCCAATTTCCGGATTCCCCATGGAACAATGTGTAACCAGCTGGAAGCTGCCTGGAAAAGGATGTTTGTATCAGCTCACTTCAATTAAAATATACAAGAGAACCTCTTGGGATCCAGACTTGTTTGAGACATACTCTTTCTCCAATGGTAGAGACACCTTTGTGTGCTGCAATAGAGCATTTGTAGAATAAAGATCGATTACCTTCTACTTTTGATTTATAGCCAAACATGTACAATTTGCAAACTCTTTTTGAGCAAATATATGAATATGGAGAATAATATTGTGCTTAAAAGCTTACGGGTAGCAATGACATAAGAATCTGTTGAGGCGTCATTGAATATCAGTTTTCGAATCCCAATCCTGTCATTTCGAGCATACAAGGAGGTGTAGTGGTTCAAGCCAACGAAATCCAGGGACCCTGTGAGGAACTTTGAAGTTACACCTGATATTTTTGGTAGTCTTTCCCCCACAAGCCTTCTCATTGAAAGAGGATATTTGCCAAAGAAAATTGGATCAAGAAACCTGAAAATTTTCAAGGTTGTTCCATCAAATTCTTGAAATTCAATATCTGGTAAGTGCAATCACTTAATTAATGGAGATGAGCAGTTACCATCCAAGTTCAAAGTCAAGGGCTCTAAGTGCTGCTTCTCTGTTCTCGTCATTTTCAGATATTGGTTCATACCATATGGCATCTAATGCTATTCCTATCTGACCTCCTTGTCTTTTCTAGTAGACAAAAAAACATAACATATTAACCTCTTAGTTTACTTATGGCTTATTTACGTGCTTCAAAGTTTCTGGAGTTAAAATTGCATATTATAGTACCTTGAAATGAATTTGGTAACTGTGATAAGCAGCAGCATGAGATAAGAGAATATGATGTGCCACTATATATGGTTCAGAGGATGAGTTTCCCTTCTTGCATAATATATGACCCAAAAAAGAACATCTACCAGGAGCTTGAATTCCTAGGTCATAGCTTTTTATTGAGTAGCCATGTGGTTCATTGAAAGTGATCCAGTTCTTCACTCTATCTCCAAATGCTTGGAAGCACGTAACAGCATAATGTTCAAAATCTTTTCTACAAGGAATTGAGCTTGTTATCAACTGATCATCATTTCCAAGCATTGGTATATCATCTGGTTTAGTTGTACTTACACTATCCTTCTGCTCAGCCATCCTTCGTACTCATCTTCAAGGACTTGTGGAAGATCCCAATGGTAAAGAGTTACAAAAGGTTGAATTCCTTGTTAAAAGGAAAAACCCACTTCAGTGATATATTACCATAAGGAAAATTGAATGCTGAGAAATGATTTAACAGATGACCTTTTTCTAGCAAAGCATCTATAAAATCATTGTAGTAGTTTATTGCATCTGGGTTTGGCTTTCCTGTTCCATCTGTTGATAGTTTCTCATAGGCAGTTAATGATATATTGTTGGGAAGGAAATGCAGTTGGTTTAATTACTTGAACTGTTTCTTACTTGGAAGGATTCTTGGCCATGAGACTGAAAATCTGTAGGCATCCATTCCCATATCCTTCATCAGCTGTATATCGTCCTATAATAAGAACATAATTTACATCTAGTTAGTAATAAGAAGGGGAATCATAGAATGACTATAATAAATGAACTCAAGTATGACAGGTGTTTATCCTCCCATTATTATATTTTACAGTTGGTTTGTCATTAATGCATTATTTACTTCTCTCTCTGTCTTCACCTTAAATCTGTGGTATTGGTCAACTGTCCTGTCTGCATTGCTGAAGTCTAGTATTCTTCCTAAACAATGCACCAAAAGAAATAGAAATTTACTCACTACTAGTATGAATTATATTGTATTCAAACTAGTCTTCTGTCGTAAAAATAGAAAAAAAAAAGTGTTCCATCAAATTTTAACTTGCCTGGTTCCTTCACAAATGTATCCCATATGCTGGCACCCCGATTTCCTTCATCTACAGCCCCTTCGAACTGCCATAGAATATGTTATTTTTTCATATTTTTAGAAACCCAGCAATGAAAGTAGCCACAAATCCCTCCTTACCTGGTATGCCGATGCTGCAGTTCCAAAAACGAAGCCATCTGGAAACTCAGCTCTGCTTAGACATTCAGAATTAGTAAAGAACTGAATAATCAGAGAGCAAATCAGAATGATTCTCATGGGGAAAAGTTTGAATTCCTGATGAGAAGATGAACTCTCAGGTCGTCCCGTTTTAAATTCCCCAAATCATTCTTAAGTACTTCGTCTTGTTAGGTATTTCGCCTGCTGGAATAGGAAAAAAAAAAAAAAAAAAAAACAAGAATGGATAGAAATTCAAAATTGTTAAGAACAACAATGGATAGATTAGCTGAATTATGAAATAAGTTGCGTGTAATCTATCTCAATCTCAATCTCTTCCTTTCTTCCTGTTGTTCACTTTTTTGAATCTATATGCAGTTGGTGATATCAAAAGAGGAGAGAAATGGATAGAAAGGAATCTAAAGATGACATCCGGCAAGCAACTGTCATTAAAAAAATTGCTTCAAAGTGGCGTGTCTGTGGAGAAGAAGCTCACGTTTGAAAAGCTTTAAAGCTTCTTAATTTGATGAAGCCAAGCCAACAACCGAAAGACCAGGGCGGTTTGCATTGAAAGGTAAGTCTTCTCTTTTTGTTACTGAATCCAATATATAGTTTTTTTCCATTACGGTGGTGATTATTATAATGCCCTGCTCCAAAATAGTGGAGAAAAAAAGGGGATAAGGTCAAAAGAGGATTAAATTTAGGGCCCTGCAAGATCTTTCAATTACGTTTTTTATTTGTTAAATTTGCAATTTAGACCAACCTTAAATTTTCTTATCCCATCTTTATGGACAAATTTTTTTTTTCTTTCTTTTTCATATTTTAATTCTTTGGGGGTGTTTGTTGAGATGGAAAATGACATGGGTTTATAAAACACATATTTTTG

mRNA sequence

ATGCAGAGCTTGTCATTTTCCCTCTTTACGTTCTTCGTCAGAAATTCGTTCCTGAACATCCGATCTGCAAGCTTCAAGCCGAGACGAATTCATTTTGAATTCTCTCTTTTTCGATCGTTTCAATCTCAGCTAAACCGGAAATCGACTTGCATTCTTGAAGAGTCGGAAATGGCGAGTTCGAGTCCAAATCGGACGGTGTATCCCATGTTCCACTCCCAGTTATCGAGCAGCGACCACGCGAAAAACCCAGCAATGAAAGTAGCCACAAATCCCTCCTTACCTGTTGGTGATATCAAAAGAGGAGAGAAATGGATAGAAAGGAATCTAAAGATGACATCCGGCAAGCAACTGTCATTAAAAAAATTGCTTCAAAGTGGCGTGTCTGTGGAGAAGAAGCTCACGTTTGAAAAGCTTTAAAGCTTCTTAATTTGATGAAGCCAAGCCAACAACCGAAAGACCAGGGCGGTTTGCATTGAAAGGTAAGTCTTCTCTTTTTGTTACTGAATCCAATATATAGTTTTTTTCCATTACGGTGGTGATTATTATAATGCCCTGCTCCAAAATAGTGGAGAAAAAAAGGGGATAAGGTCAAAAGAGGATTAAATTTAGGGCCCTGCAAGATCTTTCAATTACGTTTTTTATTTGTTAAATTTGCAATTTAGACCAACCTTAAATTTTCTTATCCCATCTTTATGGACAAATTTTTTTTTTCTTTCTTTTTCATATTTTAATTCTTTGGGGGTGTTTGTTGAGATGGAAAATGACATGGGTTTATAAAACACATATTTTTG

Coding sequence (CDS)

ATGCAGAGCTTGTCATTTTCCCTCTTTACGTTCTTCGTCAGAAATTCGTTCCTGAACATCCGATCTGCAAGCTTCAAGCCGAGACGAATTCATTTTGAATTCTCTCTTTTTCGATCGTTTCAATCTCAGCTAAACCGGAAATCGACTTGCATTCTTGAAGAGTCGGAAATGGCGAGTTCGAGTCCAAATCGGACGGTGTATCCCATGTTCCACTCCCAGTTATCGAGCAGCGACCACGCGAAAAACCCAGCAATGAAAGTAGCCACAAATCCCTCCTTACCTGTTGGTGATATCAAAAGAGGAGAGAAATGGATAGAAAGGAATCTAAAGATGACATCCGGCAAGCAACTGTCATTAAAAAAATTGCTTCAAAGTGGCGTGTCTGTGGAGAAGAAGCTCACGTTTGAAAAGCTTTAA

Protein sequence

MQSLSFSLFTFFVRNSFLNIRSASFKPRRIHFEFSLFRSFQSQLNRKSTCILEESEMASSSPNRTVYPMFHSQLSSSDHAKNPAMKVATNPSLPVGDIKRGEKWIERNLKMTSGKQLSLKKLLQSGVSVEKKLTFEKL
Homology
[Close]
BLAST of CmoCh01G012180 vs. NCBI nr
Match: KAG7015231.1 (hypothetical protein SDJN02_22864, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-12
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 15  NSFLNIRSASFKPRRIHFEFSLFRSFQSQLNRKSTCILEESEMASS 61
           NSFLNIRSASF PRRIHFEFSL RSFQSQLNRKSTCI EESEMASS
Sbjct: 160 NSFLNIRSASFMPRRIHFEFSLLRSFQSQLNRKSTCIREESEMASS 205

The following BLAST results are available for this feature:
BLAST of CmoCh01G012180 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G012180 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G012180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015231.13.3e-1293.48hypothetical protein SDJN02_22864, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh01G012180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G012180.1CmoCh01G012180.1mRNA