CmoCh01G012160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G012160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	organelle RRM domain-containing protein 2, mitochondrial-like
Location	Cmo_Chr01: 9802995 .. 9805872 (-)
RNA-Seq Expression	CmoCh01G012160
Synteny	CmoCh01G012160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGACACATTTTTTCTTAGTCTGTTCCAGACAGGGTTTAGCAGCTTAAACCCACAAGGCCATGGCTCTCAGATCGGCTGCGGCGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGATTGGGAGAAACTGGAATCGAGCACGAATGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTTGTTTCCGGTAACTCACTCTTTCTTAATCTAGATGTCTTTCGTTTAATTGTTTTAATAATCGTGTAGTTGTTTCTCGTAAATGTGTCGCGATTTGTAAATCGACCATTTTTCTGGCGGTGAATCTGCGAATATTATTGTGTTTAATGGTTCTATTCCTGCCGAATCAGTTCTGTGTGGCTATGGTGGCGTTACGTATTGGAGTTTGTGGAATTTCAGTTTTCCTGTTGTTTCTTTTTCCTTCTCTTTAATTATTAATTTGTTCGATAGCTTTTTAGTTAGTGTTAAGACATCTTTTTGAATTTCATACTTTTTCCCCTCCGCGTTCTTGAGTTTGCTTCACCCCTGGATTAGCAATTGTTGTGATGCATCCGTATATTTATCAAGTTTTAATATCGGAGAGTTAAGTCGTGGTAGAATATCAAGTGTTGTATGCTTAAGTCTATGCTTGATCACATGAGGTGGCTATCCGTGCTCTGGGAGGGGCGTTGGATTTCTCTACTTTGATCTCTTTTAATGATTAGTTCTTGGAGGTTGGAATTGAAATTTGGCTATGAATGTGTTTTTTTCATTCTTCTGTTTGTTCCCCAGTAGAGGAATTATCTGATTTTTAATCTAGATAATTGAATTATTGTTGTTGCTCTAAAAAAAAGTCTTTGTTTTTCATGTGTCGTTGGTGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAATTCGGAGAAGTTGTTCATGGTCTGTCCGTTCTCTTTGCTTATGTTTGATTTGTGCTTAGGCCTTTAGAATTGCCGTCTTTGACCTTTTGTTTTCCCTTCTGTTTACAGCAAGAGTTGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTTAAATATGCTACTTTGGAGGATGCAGCTAAAGGCATAGAGGGTATGGATGGCAAGGTAAGTTGGCATCAATTCCCTCTTTTCTCATTCGAGACGTGAAGCTTGTCTGTTGTGTAGTTTTATCCACATTTATACAAGATTCCTGGATCTCTTACTCATGTTTTGTGCCTGTGTTAGGAGAGAGGCCAGGGTTGTTGACTACTCTACGAACAGAAACTCTAATAAATGAGAGAGAAAATAAATTAGAATATGTTTTATTATGCTAATGGGGCGTACTACCCAAATAAATACAAGATTCCTGAATATGGCTAAGATAGCATTCTAGAGCATTTGATCAGCAGCATGGAAAACATATTACCTCGTACAATACTCAGCTTTTTTATTCTTTGCCTTCAAGTTGGCTGCATTTTTTATTCTTTCAGATAGTAATGGATGTTTAAGTTTAGCTGCTCGAATTGTCTAATTCTATGGCATATCAACTTCACAACATTTAGAAAAGACACTGTAGGGGTGAGTGATACTCATATCCGAGGTAAACCATAAGCTCAAAGCTGTGTGTGGTATAATTTTTCTTGGATTGAAGCCAACACATGGTGGTTGCATTTTGATCAAATATTCTAAAGAGTATAACCTTGTTGCCAAAATTTGGGTGGTATTTGACAATCCCTTGTGAAGGTCTTTCTCACCGTTATTTTGACGGTACGCCCCTTTAGGGTGTGAAGCCTTTGTTGCGGATGCATGTTGCCTGGACTTTCTTTTGGGTTTTATGCAAGAAAAGAAACCAAAAGGTGCCCTTCGACAAAGAGCTCACCTTTGGTGGGTGTTTTGATTTTGTTATTTATCATTACTATTATCATCAATTGTTAAAACCATTCCAATATGTTGCTAAATTGTTAATGAGCCTTCGTTGGTCAAAAGGTCTTTAAAGAACAGACTTAACAACACAAAACAATTGTAATTAAACAATTAATTGATTTAGGTCTCTTTTAAATCCATTTTGTTCATTTTTGGAGTTCAACAATTGTAGGGGTGGGAGACTAAACCATTTACTTTGACATCACTTCCCTAGGTTTTCTTCACTATAATTTTTGACATTTTGGTAGAAGAATTTTGTCATTGGCTGTTCAAATTAACTTGATTCCATGCAGTTTAACATATACTCTGGTAAACTTTAGAGATTAGAATGGGGAGACTGGTTTGATGCTTGCTTTTGAACACACGCTGTAATTTGTTTATCATGATTGAATGATGATGAAACTCCATTTATTTTACCTCAATGTTTTCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCACTCTGCTCCTCCGCATAGCCAGCGACCATATTAATTTTTGCAAGGAAGAATGCTTGCCATATCCACTAAGCTCTCCTGGTATGCAAACTGGCACGCAACATTTATACACGATTCAAGTTCTTTTTTCAACGGAGGTTCGTTATTCTCTTCCATTGCTTAGAACCTTTTTGTACTACGGAACTGGAGATTAGCCGCAAGAATCAGAGTATATTTAAATTGAGAGAAGAAATTTTATACGTACCATGTATGACCCTACTGCTAAATACACTTAGTTAAAACTAATTTATATATAAATTCGCAAATAAACTTACTTTCCAGTGCA

mRNA sequence

GAAAGACACATTTTTTCTTAGTCTGTTCCAGACAGGGTTTAGCAGCTTAAACCCACAAGGCCATGGCTCTCAGATCGGCTGCGGCGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGATTGGGAGAAACTGGAATCGAGCACGAATGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTTGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAATTCGGAGAAGTTGTTCATGCAAGAGTTGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTTAAATATGCTACTTTGGAGGATGCAGCTAAAGGCATAGAGGGTATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCACTCTGCTCCTCCGCATAGCCAGCGACCATATTAATTTTTGCAAGGAAGAATGCTTGCCATATCCACTAAGCTCTCCTGGTATGCAAACTGGCACGCAACATTTATACACGATTCAAGTTCTTTTTTCAACGGAGGTTCGTTATTCTCTTCCATTGCTTAGAACCTTTTTGTACTACGGAACTGGAGATTAGCCGCAAGAATCAGAGTATATTTAAATTGAGAGAAGAAATTTTATACGTACCATGTATGACCCTACTGCTAAATACACTTAGTTAAAACTAATTTATATATAAATTCGCAAATAAACTTACTTTCCAGTGCA

Coding sequence (CDS)

ATGGCTCTCAGATCGGCTGCGGCGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGATTGGGAGAAACTGGAATCGAGCACGAATGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTTGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAATTCGGAGAAGTTGTTCATGCAAGAGTTGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTTAAATATGCTACTTTGGAGGATGCAGCTAAAGGCATAGAGGGTATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCACTCTGCTCCTCCGCATAGCCAGCGACCATATTAA

Protein sequence

MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY

Homology

[Close]

BLAST of CmoCh01G012160 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 88/149 (59.06%), Postives = 104/149 (69.80%), Query Frame = 0


Query: 26  LPIISQAIWDWEKLESSTNAFVSGRLF-SSTSISSFIPPPLPPSAQQREKPEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+ S  SF+ P        R + EPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPRPPPEHHSAPPHSQRP 174
           LDGWVIFAEYARPR   + +    +  RP
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRP 150

[Close]

BLAST of CmoCh01G012160 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 47  VSGRLFSS-TSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEV 106
           + G L SS  S  S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CmoCh01G012160 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L+EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPR 159
              +G+ L+G  IF +YA+ +
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAK 113

[Close]

BLAST of CmoCh01G012160 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 67  PSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q  +   S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

[Close]

BLAST of CmoCh01G012160 vs. ExPASy Swiss-Prot
Match: Q9LU44 (Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 63  PPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGF 122
           P  PPS +  E     TNL++  L      + L   F+ FGE+V A+V+ DRVTG SKG+
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGY 528

Query: 123 GFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRP 174
           GFVKYA ++ A   ++ M+G   +G  +    A   PPP     PP  Q P
Sbjct: 529 GFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPPAPQPP 574

[Close]

BLAST of CmoCh01G012160 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 4.9e-91
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of CmoCh01G012160 vs. ExPASy TrEMBL
Match: A0A6J1IUI1 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111480692 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.3e-88
Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAAVA R LRRLI GTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVASRCLRRLIIGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPS+NLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSSNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of CmoCh01G012160 vs. ExPASy TrEMBL
Match: A0A6J1FB41 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111443707 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.9e-76
Identity = 152/172 (88.37%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEK-LESSTNAFVSGRLFSSTSISS 60
           MALRSAAA APRSLRRLITGTS+RTLPI  QAI D EK    +TNAFVSGRLFSS S SS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQ 172
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ PP+ +
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 172

[Close]

BLAST of CmoCh01G012160 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.4e-75
Identity = 148/172 (86.05%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAA APRSLRRLITGTS+RTLP+  QAI D EK   +TNAFVSGRLFSS S SSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKL+E FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQR 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ PP+ ++
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGRQ 172

[Close]

BLAST of CmoCh01G012160 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 144/165 (87.27%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAA APRSLR+LITGTS+RTLPIISQAI DWEK   STN+F+ GRLFSS S SSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHS 166
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+++
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNN 165

[Close]

BLAST of CmoCh01G012160 vs. NCBI nr
Match: XP_022940520.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschata] >KAG6607832.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015229.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of CmoCh01G012160 vs. NCBI nr
Match: XP_023521975.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 3.6e-88
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAAVA RSLRRLITGTSSRTLPIISQAIWDWEKLESST AFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVASRSLRRLITGTSSRTLPIISQAIWDWEKLESSTTAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAP HSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPQHSQRPY 174

[Close]

BLAST of CmoCh01G012160 vs. NCBI nr
Match: XP_022981627.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 334.7 bits (857), Expect = 4.7e-88
Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAAVA R LRRLI GTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF
Sbjct: 1   MALRSAAAVASRCLRRLIIGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPS+NLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSSNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174

[Close]

BLAST of CmoCh01G012160 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78
Identity = 154/172 (89.53%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60
           MALRSAAA APRSLRRLITGTS+RTLPIISQ I DWEKLE STNAF+SGRLFSS S SSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQR 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE++   PH  +
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGFRPHGHQ 172

[Close]

BLAST of CmoCh01G012160 vs. NCBI nr
Match: KAG6592009.1 (Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-75
Identity = 152/172 (88.37%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEK-LESSTNAFVSGRLFSSTSISS 60
           MALRSAAA APRSLRRLITGTS+RTLPI  QAI D EK    +TNAFVSGRLFSS S SS
Sbjct: 53  MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 112

Query: 61  FIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 113 FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 172

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQ 172
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ PP+ +
Sbjct: 173 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 224

[Close]

BLAST of CmoCh01G012160 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.5 bits (389), Expect = 8.1e-38
Identity = 88/149 (59.06%), Postives = 104/149 (69.80%), Query Frame = 0


Query: 26  LPIISQAIWDWEKLESSTNAFVSGRLF-SSTSISSFIPPPLPPSAQQREKPEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+ S  SF+ P        R + EPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPRPPPEHHSAPPHSQRP 174
           LDGWVIFAEYARPR   + +    +  RP
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRP 150

[Close]

BLAST of CmoCh01G012160 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-24
Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 41  SSTNAFVSGRLFSSTSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFA 100
           SS    V+G   SS+ +SS      P    +R     S  LFVSGLS+ TT EKL +AFA
Sbjct: 5   SSFRRLVAG---SSSLLSS------PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFA 64

Query: 101 KFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 160
            FG++V ARV+TDR +G SKGFGFV YAT+EDA K    M+ KFLDGWVIF + ARPR P
Sbjct: 65  SFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115

[Close]

BLAST of CmoCh01G012160 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 47  VSGRLFSS-TSISSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEV 106
           + G L SS  S  S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CmoCh01G012160 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 9.6e-15
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L+EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPR 159
              +G+ L+G  IF +YA+ +
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAK 113

[Close]

BLAST of CmoCh01G012160 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 67  PSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q  +   S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

The following BLAST results are available for this feature:

BLAST of CmoCh01G012160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.1e-36	59.06	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	2.0e-17	46.02	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.4e-13	45.68	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FNR1	2.3e-13	42.39	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LU44	1.5e-12	38.74	Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1	[more]

BLAST of CmoCh01G012160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQV3	4.9e-91	100.00	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1IUI1	2.3e-88	97.70	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1FB41	9.9e-76	88.37	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1INZ4	6.4e-75	86.05	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A5D3DR24	1.7e-72	87.27	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmoCh01G012160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940520.1	1.0e-90	100.00	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschat...	[more]
XP_023521975.1	3.6e-88	98.28	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita pepo su...	[more]
XP_022981627.1	4.7e-88	97.70	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]
XP_038896843.1	4.4e-78	89.53	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
KAG6592009.1	2.0e-75	88.37	Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita arg...	[more]

BLAST of CmoCh01G012160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	8.1e-38	59.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	3.0e-24	54.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.4e-18	46.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	9.6e-15	45.68	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	1.6e-14	42.39	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..153 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..147 e-value: 7.7E-20 score: 70.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..157 score: 18.393282
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 66..173 e-value: 9.7E-29 score: 102.2
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..167
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..167
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G012160.1	CmoCh01G012160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding