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CmoCh01G012050 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCGAACCGTTTCGACTCGTACGAAAACCGATTCCGACCGACCGCCGGCTCAGCAACCGGCAACCGTTTTATTTCTGACCCAAAATGTAATTCACGCGTTAGGATGACGTGTCTCTCCCACTCAATCCCCCAATATGGCCGAACACCTACCAACAATAATACGCCCCCAATCCCCAATCTTCAACGAATTTTATCGTCCCCAAATTTTTCATCTCCTTCAATTGCCCTAACCCTAATTCTGGTCCTCTGATTTTGCTTTCAACTATCATTCTGATCGGATTAGTAACGCTTTTCGTTGTTGTTGTTGTTGTTCTTGTTGTTTGAGAAAATGGTATCCCCTGAAAATTCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCCGTTTCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGGTAATCTTCAGATCTCTATCGATTAAGCTCTTAAGCTTGTTTTTGTTTTTTTCGTATCGAAAGCTAAATTAGGTTTTGTTTGCTTCGAATGGTGTTTTGTTTTTTGTGTTTCTTCCCGGGTTTTCGTGTACTTGCCGAATTATGGGAGGTGGAGTGGCCCTTTAATTGCCGTCCAGATTAATATTGGAGAAGATCTCAACCTGCTTTGGAACTTTTTTGGATTGAGCTAGTAATGAGTTCGGACTTCCGAGTTTTATGACTGGAAAACTCTGAGGTTTTGAGGAAAATGGTTTATAGATACTACTGGTTCTGTTTGGTGAACTATTAGGTTGTTGACCGGATTGATTTAGTGTCCACAGGGGTGATGGGTGGGATTAACAAGACGTTGGGGGCGTGAATATACCAAGAACTATGTGTTGTTGTATTTTGGTAACTGTAAGATTGTAAGGATGATTGTGCGTCTTGGCTTTTAGGTTTATATGAATTTGTATAAATGGTAGTTTCTCTGTGAGGAAAGTTTCGTATGTTATGTTGAATTCCGGTGGCATGTAGAAAGATTTGTCTTTTACTTTTTTCGACATATTAATGTAAATTTTGTTGATGTTTAGTTCTTTTTCTTTGGACATGTTATTCTAGTGCGGAAATTGATGGGTCATCGGCAGATCTGGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGTACGAGACCTTCGTTATTACTTCTTAATCTTGTCTGTTCAATATAAACAACCTTTTGACTCTTGGTAATATTTCTGCTTTGAAGTCTTTTCCATAACGATGATCTGGGAATCAATATCATTAGAAATATATTAGCTGTATTATTATTGGCACAAACAGCATGAATCGACTTTATGCAAGCATTTTAGTTAGTCATTACTTGTACAGTGAGGTCTTTTCTAATTTAAAATTTCCAGAAATTTGTATCCAGTTTATGTTCTAATCGACTTGAAACTAGGTTTACATTTTATCTTACTGCTGAAATTTAAGTCTTTGTGATCTTTTACTCCGGTCACAGCACTTTCGATGGTTACTCACTTGTCAGATATGTGTTAACTGAAGAGCATTCAGTTGTATGGCATGGATGGGAGGGAGTGATAAAGCTATGATTCTTCCTTTATTTGAACTTCAATGCAATTATATGTGAGAGTTCTAATAGGATTGTATGGAGATGATATGTAGGATATTAGTAATGGCATAGTAGTAATTAGATAGGGTGACTTAGTTATAAATAGAGGGAGATAGGGACTTTAGAGGGGAGTTCATTTTAGTGGAATTGACCATTGTGGGACTCGAGAGCGAGTTTCCAACTCGAAAGGCTATAGTTATACTGTAATTTCCCTTTGATATGGCAATTTATTAGTATCTTGTGGTAAGTGTTTGGCACCTAATAAATTGTTTGTGGCTTTTTATTATAACTATATTACATCAAGCTGATTATTCGTATTGATATCGTATCTAGTGTCCTAATCAATGTTATTTAGTAAAAGGCTAAGGATCCATTTATTTATTTTACGTCCTTTTTCCATTGTGAAATTTGGCTTACCATGTTAAGATGTTGAGTTGGTTTAACTAGGTGTAAATAGATATAGTAACAAATGAAACTAAAAGTGGGAAGGAAAATATGATATAGCATCAAATAAAGTATACTCGTTTTATGCTGCAGGGTCCGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTACTTCCTCGATCCCGAACCCCCCATTTATCTATGTTTATAACGATTGTCTGTTACCTCAACAAATCAAATTGTTATGTGCATCACAAAACAGGTTTCTGACACTGGGCTCCATTTTGGAACCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAACTGAAGGTACGTTTATTTCGCTTTCTTGCCAAAGACGTGCCATTATATTAGCTCGCTTTGATTGCTTTTGATGCATTTGAATGGAGAAGTCTGATAATAATATTTCATTTCTCGCAATCTTGTATAGGCTGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAACTCGGTGACCAGCTGAGATTTCCTGTAAAATTCCACTGGCAGCATCTGGTTGCTTGGGAATTTATCCTTAACTTCAATATTTATTCTGTCATTGTGGAGCAATATATATTAGTATTGGTAGTTTGTAGGGTTGTCAATTGTTTTTGGGACTGACTATCATATGTGTCATTGGATACTTGAAAGAAGAACAAGTACTATTTTGTAATTGTAAATGTGATTTGAGTGATTTGCTAAATGACTCTCTCCATTCCAT ATGGACCGAACCGTTTCGACTCGTACGAAAACCGATTCCGACCGACCGCCGGCTCAGCAACCGGCAACCGTTTTATTTCTGACCCAAAATGTAATTCACGCGTTAGGATGACGTGTCTCTCCCACTCAATCCCCCAATATGGCCGAACACCTACCAACAATAATACGCCCCCAATCCCCAATCTTCAACGAATTTTATCGTCCCCAAATTTTTCATCTCCTTCAATTGCCCTAACCCTAATTCTGGTCCTCTGATTTTGCTTTCAACTATCATTCTGATCGGATTAGTAACGCTTTTCGTTGTTGTTGTTGTTGTTCTTGTTGTTTGAGAAAATGGTATCCCCTGAAAATTCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCCGTTTCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGTGCGGAAATTGATGGGTCATCGGCAGATCTGGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGGTCCGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTTTCTGACACTGGGCTCCATTTTGGAACCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAACTGAAGGCTGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAACTCGGTGACCAGCTGAGATTTCCTGTAAAATTCCACTGGCAGCATCTGGTTGCTTGGGAATTTATCCTTAACTTCAATATTTATTCTGTCATTGTGGAGCAATATATATTAGTATTGGTAGTTTGTAGGGTTGTCAATTGTTTTTGGGACTGACTATCATATGTGTCATTGGATACTTGAAAGAAGAACAAGTACTATTTTGTAATTGTAAATGTGATTTGAGTGATTTGCTAAATGACTCTCTCCATTCCAT ATGGTATCCCCTGAAAATTCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCCGTTTCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGTGCGGAAATTGATGGGTCATCGGCAGATCTGGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGGTCCGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTTTCTGACACTGGGCTCCATTTTGGAACCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAACTGAAGGCTGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAA MVSPENSNWLFDYGLIDDIPVSDANFPVTSSSFSWAVQPFDGTHDVGAEIDGSSADLDGRLESGSKKRVRSDSCSGSSSKACREKLRRDRLNEKFLTLGSILEPGRTPKTDKAAILVDAVRMVNQLRSEAQKLKESNSSLQDKIKELKAEKNELRDEKQRLKADKEKLEQQVKSMHAHPAGFLPPPIPTFAAQSQAPGGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA Homology
BLAST of CmoCh01G012050 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 4.3e-71 Identity = 158/241 (65.56%), Postives = 182/241 (75.52%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy Swiss-Prot
Match: Q9C682 (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 1.4e-66 Identity = 147/239 (61.51%), Postives = 177/239 (74.06%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy Swiss-Prot
Match: Q8L467 (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 4.6e-41 Identity = 99/173 (57.23%), Postives = 123/173 (71.10%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy Swiss-Prot
Match: Q9LTC7 (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 3.3e-39 Identity = 97/176 (55.11%), Postives = 124/176 (70.45%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy Swiss-Prot
Match: Q9LT23 (Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 4.7e-17 Identity = 63/156 (40.38%), Postives = 90/156 (57.69%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy TrEMBL
Match: A0A6J1FJB6 (transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111445891 PE=4 SV=1) HSP 1 Score: 459.5 bits (1181), Expect = 8.3e-126 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy TrEMBL
Match: A0A6J1IUE4 (transcription factor ILR3-like OS=Cucurbita maxima OX=3661 GN=LOC111480664 PE=4 SV=1) HSP 1 Score: 453.0 bits (1164), Expect = 7.7e-124 Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy TrEMBL
Match: A0A5D3BHU4 (Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00660 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108 Identity = 208/236 (88.14%), Postives = 216/236 (91.53%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy TrEMBL
Match: A0A1S3BYW4 (transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103494952 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108 Identity = 208/236 (88.14%), Postives = 216/236 (91.53%), Query Frame = 0
BLAST of CmoCh01G012050 vs. ExPASy TrEMBL
Match: A0A0A0L7N8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 3.5e-108 Identity = 208/236 (88.14%), Postives = 216/236 (91.53%), Query Frame = 0
BLAST of CmoCh01G012050 vs. NCBI nr
Match: XP_022940189.1 (transcription factor ILR3-like [Cucurbita moschata] >XP_023525507.1 transcription factor ILR3-like [Cucurbita pepo subsp. pepo] >KAG6607821.1 Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 459.5 bits (1181), Expect = 1.7e-125 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CmoCh01G012050 vs. NCBI nr
Match: XP_022981592.1 (transcription factor ILR3-like [Cucurbita maxima]) HSP 1 Score: 453.0 bits (1164), Expect = 1.6e-123 Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of CmoCh01G012050 vs. NCBI nr
Match: XP_038900262.1 (transcription factor ILR3-like [Benincasa hispida]) HSP 1 Score: 403.3 bits (1035), Expect = 1.5e-108 Identity = 210/236 (88.98%), Postives = 219/236 (92.80%), Query Frame = 0
BLAST of CmoCh01G012050 vs. NCBI nr
Match: XP_008454561.1 (PREDICTED: transcription factor ILR3-like [Cucumis melo] >KAA0046455.1 transcription factor ILR3-like [Cucumis melo var. makuwa] >TYJ97758.1 transcription factor ILR3-like [Cucumis melo var. makuwa]) HSP 1 Score: 401.7 bits (1031), Expect = 4.2e-108 Identity = 208/236 (88.14%), Postives = 216/236 (91.53%), Query Frame = 0
BLAST of CmoCh01G012050 vs. NCBI nr
Match: XP_004151962.3 (transcription factor ILR3 [Cucumis sativus] >KAE8650684.1 hypothetical protein Csa_011799 [Cucumis sativus]) HSP 1 Score: 398.3 bits (1022), Expect = 4.7e-107 Identity = 206/236 (87.29%), Postives = 215/236 (91.10%), Query Frame = 0
BLAST of CmoCh01G012050 vs. TAIR 10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 269.2 bits (687), Expect = 3.1e-72 Identity = 158/241 (65.56%), Postives = 182/241 (75.52%), Query Frame = 0
BLAST of CmoCh01G012050 vs. TAIR 10
Match: AT1G51070.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 254.2 bits (648), Expect = 1.0e-67 Identity = 147/239 (61.51%), Postives = 177/239 (74.06%), Query Frame = 0
BLAST of CmoCh01G012050 vs. TAIR 10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 226.9 bits (577), Expect = 1.7e-59 Identity = 150/297 (50.51%), Postives = 180/297 (60.61%), Query Frame = 0
BLAST of CmoCh01G012050 vs. TAIR 10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 169.5 bits (428), Expect = 3.3e-42 Identity = 99/173 (57.23%), Postives = 123/173 (71.10%), Query Frame = 0
BLAST of CmoCh01G012050 vs. TAIR 10
Match: AT4G14410.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 169.5 bits (428), Expect = 3.3e-42 Identity = 99/173 (57.23%), Postives = 123/173 (71.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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