CmoCh01G011980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G011980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Lysine-specific demethylase
Location	Cmo_Chr01: 9711095 .. 9712020 (+)
RNA-Seq Expression	CmoCh01G011980
Synteny	CmoCh01G011980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAGAAAACTCCACCAGTAACTCCGTCTGCCACGGCGGCGATCAGTCGCCGGAGGAGAGTGGCTGGACCATCTACTTCCAAGATTTCCTCAACACCAACCACCCTGCTCACTATCCTGCCTCCTCCTCTTCTCATCCGTCTCCCGATCAAAGCTACTCCGTCGCCGACGCCGCCTCCTCCATCGCCGATCACAAACTACCCGGCGACGACAACCGAGCTGCCATGGATCCCAATTTGAGCTGCAAAGATCATATCAACCTTTTCAAGAGAAGGAAGATGATCAAAGAGTTGTTGGTTGAAGATGAAGCTTTGGAGGATACAGCTAGCTCTCCGGTTAACAGTCCAAAGGTAAAATTTAAATTATGTATTAATTATAATTTTAATAGTTAAAAATATGAATAAATGATTGAATTTCACCGAACCCGAGTTTGAGTTAACAAATCTCGAGTTTTGTCTAATGGGTTTTCTTGGACGTGAAAATATGCAGGTTTCTGATGCAACTTTCTTCAGTAAGAACTCGGGACACAACGAGAACCAGATAAAGGTATGGAAGTACATGGTCGAAAATGATATTTTAATTTTTTAAAAAAGAAAATGATGGAAGTGTTGTTATTTTGGGCAGGTAAACGAGAGAAGAGAAATGGGTTTAGTTGGAATTGGAAATGAGTACAAAGAGTTGAAGAAAAGAGGGCTTTGCTTGGTACCTTTGTGTATGGTAATGAATTATTTGGCTCAATAATTGCCATCTCTCTCTTGTTTATGTGCATATTCATTGGATGAAGGCGCTATTGTGTACGATACCATGTCTAACACGTTGGTGTATCATTATTGTAATCAAATCGAGGCATTACAATATTTACTTTCTTATGATCGTCTTGATCTGAATCTTGGATATGGGTGTTACAAATAGTGTTAGAGCG

mRNA sequence

ATGGCCAAAGAAAACTCCACCAGTAACTCCGTCTGCCACGGCGGCGATCAGTCGCCGGAGGAGAGTGGCTGGACCATCTACTTCCAAGATTTCCTCAACACCAACCACCCTGCTCACTATCCTGCCTCCTCCTCTTCTCATCCGTCTCCCGATCAAAGCTACTCCGTCGCCGACGCCGCCTCCTCCATCGCCGATCACAAACTACCCGGCGACGACAACCGAGCTGCCATGGATCCCAATTTGAGCTGCAAAGATCATATCAACCTTTTCAAGAGAAGGAAGATGATCAAAGAGTTGTTGGTTGAAGATGAAGCTTTGGAGGATACAGCTAGCTCTCCGGTTAACAGTCCAAAGGTTTCTGATGCAACTTTCTTCAGTAAGAACTCGGGACACAACGAGAACCAGATAAAGGTAAACGAGAGAAGAGAAATGGGTTTAGTTGGAATTGGAAATGAGTACAAAGAGTTGAAGAAAAGAGGGCTTTGCTTGGTACCTTTGTGTATGGTAATGAATTATTTGGCTCAATAATTGCCATCTCTCTCTTGTTTATGTGCATATTCATTGGATGAAGGCGCTATTGTGTACGATACCATGTCTAACACGTTGGTGTATCATTATTGTAATCAAATCGAGGCATTACAATATTTACTTTCTTATGATCGTCTTGATCTGAATCTTGGATATGGGTGTTACAAATAGTGTTAGAGCG

Coding sequence (CDS)

ATGGCCAAAGAAAACTCCACCAGTAACTCCGTCTGCCACGGCGGCGATCAGTCGCCGGAGGAGAGTGGCTGGACCATCTACTTCCAAGATTTCCTCAACACCAACCACCCTGCTCACTATCCTGCCTCCTCCTCTTCTCATCCGTCTCCCGATCAAAGCTACTCCGTCGCCGACGCCGCCTCCTCCATCGCCGATCACAAACTACCCGGCGACGACAACCGAGCTGCCATGGATCCCAATTTGAGCTGCAAAGATCATATCAACCTTTTCAAGAGAAGGAAGATGATCAAAGAGTTGTTGGTTGAAGATGAAGCTTTGGAGGATACAGCTAGCTCTCCGGTTAACAGTCCAAAGGTTTCTGATGCAACTTTCTTCAGTAAGAACTCGGGACACAACGAGAACCAGATAAAGGTAAACGAGAGAAGAGAAATGGGTTTAGTTGGAATTGGAAATGAGTACAAAGAGTTGAAGAAAAGAGGGCTTTGCTTGGTACCTTTGTGTATGGTAATGAATTATTTGGCTCAATAA

Protein sequence

MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAASSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVSDATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ

Homology

[Close]

BLAST of CmoCh01G011980 vs. ExPASy Swiss-Prot
Match: Q5BPG5 (Vascular-related unknown protein 4 OS=Arabidopsis thaliana OX=3702 GN=VUP4 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.7e-12
Identity = 63/161 (39.13%), Postives = 83/161 (51.55%), Query Frame = 0


Query: 16  DQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPD-QSYSVADAASSIADHKLPGDDNR 75
           DQ+PEES WT+YF+DF        + ASSS     D  S SV+DAAS +A  K       
Sbjct: 22  DQNPEESSWTMYFEDF--------FEASSSIVDVGDFSSSSVSDAASFVATKK------- 81

Query: 76  AAMDPNLSCKDHINLFKRRKMIKEL-LVEDEALEDTASSPVNSPKV-SDATFFSKNSGHN 135
                N+S ++  NL  +R   +E+       LEDTASSP  SP V S       N+ H 
Sbjct: 82  ---TLNVSKQEGSNLDIKRTRNREIPFGRHHDLEDTASSPSGSPNVYSMMNLQDNNTRHG 141

Query: 136 ENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYL 174
              +  +E+R   +   G    +LKK+GLCLVPL MV N+L
Sbjct: 142 GGIVGDDEKRVSAVPNQGGLPIDLKKKGLCLVPLSMVTNFL 164

[Close]

BLAST of CmoCh01G011980 vs. ExPASy Swiss-Prot
Match: Q9LSZ3 (Vascular-related unknown protein 1 OS=Arabidopsis thaliana OX=3702 GN=VUP1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-10
Identity = 58/187 (31.02%), Postives = 83/187 (44.39%), Query Frame = 0


Query: 13  HGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAASSIADHKLPGDD 72
           HGGD   EESGWT Y  DF N     H+  +     S   SYS+   ++S+         
Sbjct: 30  HGGDHQ-EESGWTTYLDDFSNQYRTTHHEENDHQDKS---SYSLLATSTSLVSDAATHAF 89

Query: 73  NRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS------------ 132
           +  +   N   K      + +K     + ED++LEDTASSPVNSPKVS            
Sbjct: 90  SGKSFPVNFPAKLKFGRGRTKK-----ICEDDSLEDTASSPVNSPKVSHFEHIQTPPRKI 149

Query: 133 ----DATFFSKN-SGHNENQIKVNERREM----------GLVGIGNEYKELKKRGLCLVP 173
                ++F   N  G  ++QI++ E  E           G     N   +L+ RGLC+VP
Sbjct: 150 EDYVSSSFVMGNIRGMGDHQIQIQEGGEQKVTLMRNLIDGNNNNNNNNMDLRSRGLCVVP 207

[Close]

BLAST of CmoCh01G011980 vs. ExPASy Swiss-Prot
Match: Q9C6I7 (Vascular-related unknown protein 2 OS=Arabidopsis thaliana OX=3702 GN=VUP2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 0


Query: 16  DQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAASSIADHKLPGDDNRA 75
           ++  EES W +YF+D  + +          +H   + S  ++DAAS +   K+     R 
Sbjct: 25  EEDHEESSWIVYFEDIDHDDEMVE-TEGEMTHYYDNDSSMISDAASPVHTTKINNVVRRK 84

Query: 76  AMDPNLSCKDHINLFKRRKMIKELL----VEDEALEDTASSPVNSPKV-SDATFFSKNSG 135
           A + N + K    + + ++  +E L     E+E  EDTASSP N  K+ S     + N+ 
Sbjct: 85  ANNINTNPKKRRIIHQHKEEEEEELQKGEEEEEDEEDTASSPSNKTKIFSVLDHANDNTR 144

Query: 136 HNENQIKVNERREMGLVGIGNEYK---------ELKKRGLCLVPLCMVMNYLA 175
           + +    V       +   G++ K         ELKKRGLC+VPL M+ N++A
Sbjct: 145 YGKTMDNVTSEEIGCITETGSKIKEIMNEEFSAELKKRGLCVVPLSMLSNFIA 196

[Close]

BLAST of CmoCh01G011980 vs. ExPASy TrEMBL
Match: A0A6J1FLD8 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111446469 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.1e-93
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60
           MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA
Sbjct: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60

Query: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120
           SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS
Sbjct: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120

Query: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ
Sbjct: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 175

[Close]

BLAST of CmoCh01G011980 vs. ExPASy TrEMBL
Match: A0A6J1J018 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111480691 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 163/178 (91.57%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTN---HPAHYPASSSSHPSPDQSYSVA 60
           MAKENSTSNSVCHGG+QSPEESGWTIYFQDFLNTN   HPAHYPASSSSH SPDQSYSVA
Sbjct: 1   MAKENSTSNSVCHGGNQSPEESGWTIYFQDFLNTNTNHHPAHYPASSSSHMSPDQSYSVA 60

Query: 61  DAASSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSP 120
           DAASSIADHKLPGD++RA MDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSP
Sbjct: 61  DAASSIADHKLPGDNDRAVMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSP 120

Query: 121 KVSDATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           KVSD+TFFSK+S H+ENQIKVNERREMGLVGI +EYKELKKRGLCLVPLCMV+NYLAQ
Sbjct: 121 KVSDSTFFSKSSRHHENQIKVNERREMGLVGIESEYKELKKRGLCLVPLCMVLNYLAQ 178

[Close]

BLAST of CmoCh01G011980 vs. ExPASy TrEMBL
Match: A0A6J1FG95 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.9e-56
Identity = 121/180 (67.22%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASS-SSHP-SPDQSYSVAD 60
           MAKE+S   SVCHGGDQS EESGWTIYF+DFLN +HP + P +S SS P SPDQSY +AD
Sbjct: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60

Query: 61  AASSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPK 120
           AASS+ DHKL  + + AAMDP  SCKDHIN FK+RKMI E+ V+DEALEDTASSPVNSPK
Sbjct: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYEVFVDDEALEDTASSPVNSPK 120

Query: 121 VSDATFFSKNSGHNENQI--KVNERREMG-LVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           V D+ +FSKN  H    I  +V+ERRE+G L+GIG+EY ELKKRGLCLVP  M++NY+ Q
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 180

[Close]

BLAST of CmoCh01G011980 vs. ExPASy TrEMBL
Match: A0A6J1IHA8 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 120/180 (66.67%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSH--PSPDQSYSVAD 60
           MAKE+S   S+ HGGDQS EESGWTIYF+DFLN +HP + P +S S   PSPDQSY VAD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPK 120
           AASS+ DHKL G+ + AAM P  SCKDHIN FK+RKMI ELLV+DEALEDTASSPVNSPK
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VSDATFFSKNSGHNENQI--KVNERREMG-LVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           V D+ +FSKN  H    I  +V+ERR++G L+GIG+EY ELKKRGLCLVP  M++NY+ Q
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDIGDLIGIGSEYTELKKRGLCLVPFSMIINYMDQ 180

[Close]

BLAST of CmoCh01G011980 vs. ExPASy TrEMBL
Match: A0A6J1IG62 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 9.4e-50
Identity = 113/179 (63.13%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSH--PSPDQSYSVAD 60
           MAKE+S   S+ HGGDQS EESGWTIYF+DFLN +HP + P +S S   PSPDQSY VAD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPK 120
           AASS+ DHKL G+ + AAM P  SCKDHIN FK+RKMI ELLV+DEALEDTASSPVNSPK
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VSDATFFSKNSGHNENQI--KVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           V D+ +FSKN  H    I  +V+ERR++          ELKKRGLCLVP  M++NY+ Q
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDI----------ELKKRGLCLVPFSMIINYMDQ 169

[Close]

BLAST of CmoCh01G011980 vs. NCBI nr
Match: XP_022941072.1 (vascular-related unknown protein 4-like [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 6.3e-93
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60
           MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA
Sbjct: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60

Query: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120
           SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS
Sbjct: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120

Query: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ
Sbjct: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 175

[Close]

BLAST of CmoCh01G011980 vs. NCBI nr
Match: KAG7015212.1 (hypothetical protein SDJN02_22845, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.4 bits (882), Expect = 5.9e-91
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60
           MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA
Sbjct: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60

Query: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120
           SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS
Sbjct: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120

Query: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           DATFFSKN  HNEN+IKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ
Sbjct: 121 DATFFSKNPRHNENRIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 175

[Close]

BLAST of CmoCh01G011980 vs. NCBI nr
Match: KAG6607814.1 (Vascular-related unknown protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.5 bits (872), Expect = 8.6e-90
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60
           MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA
Sbjct: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60

Query: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120
           SSIADHKLPGDDNRAAMDPNLSCKD INLFKRRKMIKELLVEDEALEDTASSPVNSPKVS
Sbjct: 61  SSIADHKLPGDDNRAAMDPNLSCKDPINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120

Query: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           DATFFSKN  HNEN+IKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ
Sbjct: 121 DATFFSKNPRHNENRIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 175

[Close]

BLAST of CmoCh01G011980 vs. NCBI nr
Match: XP_023525426.1 (vascular-related unknown protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 8.9e-87
Identity = 165/175 (94.29%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAA 60
           MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHP HYPASSSSHPSPDQSYSVADAA
Sbjct: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPTHYPASSSSHPSPDQSYSVADAA 60

Query: 61  SSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120
           SSIA+HKLP DDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS
Sbjct: 61  SSIANHKLPVDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 120

Query: 121 DATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           D  FFSKN  +NEN+IKVNERREMGLVGIGNEYKELK+RGLCLVPLCMVMNYLAQ
Sbjct: 121 DTNFFSKNPRYNENRIKVNERREMGLVGIGNEYKELKRRGLCLVPLCMVMNYLAQ 175

[Close]

BLAST of CmoCh01G011980 vs. NCBI nr
Match: XP_022981625.1 (vascular-related unknown protein 4-like [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 9.2e-84
Identity = 163/178 (91.57%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTN---HPAHYPASSSSHPSPDQSYSVA 60
           MAKENSTSNSVCHGG+QSPEESGWTIYFQDFLNTN   HPAHYPASSSSH SPDQSYSVA
Sbjct: 1   MAKENSTSNSVCHGGNQSPEESGWTIYFQDFLNTNTNHHPAHYPASSSSHMSPDQSYSVA 60

Query: 61  DAASSIADHKLPGDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSP 120
           DAASSIADHKLPGD++RA MDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSP
Sbjct: 61  DAASSIADHKLPGDNDRAVMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSP 120

Query: 121 KVSDATFFSKNSGHNENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 176
           KVSD+TFFSK+S H+ENQIKVNERREMGLVGI +EYKELKKRGLCLVPLCMV+NYLAQ
Sbjct: 121 KVSDSTFFSKSSRHHENQIKVNERREMGLVGIESEYKELKKRGLCLVPLCMVLNYLAQ 178

[Close]

BLAST of CmoCh01G011980 vs. TAIR 10
Match: AT5G54790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-13
Identity = 63/161 (39.13%), Postives = 83/161 (51.55%), Query Frame = 0


Query: 16  DQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPD-QSYSVADAASSIADHKLPGDDNR 75
           DQ+PEES WT+YF+DF        + ASSS     D  S SV+DAAS +A  K       
Sbjct: 22  DQNPEESSWTMYFEDF--------FEASSSIVDVGDFSSSSVSDAASFVATKK------- 81

Query: 76  AAMDPNLSCKDHINLFKRRKMIKEL-LVEDEALEDTASSPVNSPKV-SDATFFSKNSGHN 135
                N+S ++  NL  +R   +E+       LEDTASSP  SP V S       N+ H 
Sbjct: 82  ---TLNVSKQEGSNLDIKRTRNREIPFGRHHDLEDTASSPSGSPNVYSMMNLQDNNTRHG 141

Query: 136 ENQIKVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYL 174
              +  +E+R   +   G    +LKK+GLCLVPL MV N+L
Sbjct: 142 GGIVGDDEKRVSAVPNQGGLPIDLKKKGLCLVPLSMVTNFL 164

[Close]

BLAST of CmoCh01G011980 vs. TAIR 10
Match: AT3G21710.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-11
Identity = 58/187 (31.02%), Postives = 83/187 (44.39%), Query Frame = 0


Query: 13  HGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAASSIADHKLPGDD 72
           HGGD   EESGWT Y  DF N     H+  +     S   SYS+   ++S+         
Sbjct: 30  HGGDHQ-EESGWTTYLDDFSNQYRTTHHEENDHQDKS---SYSLLATSTSLVSDAATHAF 89

Query: 73  NRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS------------ 132
           +  +   N   K      + +K     + ED++LEDTASSPVNSPKVS            
Sbjct: 90  SGKSFPVNFPAKLKFGRGRTKK-----ICEDDSLEDTASSPVNSPKVSHFEHIQTPPRKI 149

Query: 133 ----DATFFSKN-SGHNENQIKVNERREM----------GLVGIGNEYKELKKRGLCLVP 173
                ++F   N  G  ++QI++ E  E           G     N   +L+ RGLC+VP
Sbjct: 150 EDYVSSSFVMGNIRGMGDHQIQIQEGGEQKVTLMRNLIDGNNNNNNNNMDLRSRGLCVVP 207

[Close]

BLAST of CmoCh01G011980 vs. TAIR 10
Match: AT3G21710.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-08
Identity = 40/108 (37.04%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 13  HGGDQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAASSIADHKLPGDD 72
           HGGD   EESGWT Y  DF N     H+  +     S   SYS+   ++S+         
Sbjct: 30  HGGDHQ-EESGWTTYLDDFSNQYRTTHHEENDHQDKS---SYSLLATSTSLVSDAATHAF 89

Query: 73  NRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVS 121
           +  +   N   K      + +K     + ED++LEDTASSPVNSPKVS
Sbjct: 90  SGKSFPVNFPAKLKFGRGRTKK-----ICEDDSLEDTASSPVNSPKVS 128

[Close]

BLAST of CmoCh01G011980 vs. TAIR 10
Match: AT1G50930.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20557.1); Has 215 Blast hits to 213 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 83; Fungi - 10; Plants - 45; Viruses - 5; Other Eukaryotes - 70 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 0


Query: 16  DQSPEESGWTIYFQDFLNTNHPAHYPASSSSHPSPDQSYSVADAASSIADHKLPGDDNRA 75
           ++  EES W +YF+D  + +          +H   + S  ++DAAS +   K+     R 
Sbjct: 25  EEDHEESSWIVYFEDIDHDDEMVE-TEGEMTHYYDNDSSMISDAASPVHTTKINNVVRRK 84

Query: 76  AMDPNLSCKDHINLFKRRKMIKELL----VEDEALEDTASSPVNSPKV-SDATFFSKNSG 135
           A + N + K    + + ++  +E L     E+E  EDTASSP N  K+ S     + N+ 
Sbjct: 85  ANNINTNPKKRRIIHQHKEEEEEELQKGEEEEEDEEDTASSPSNKTKIFSVLDHANDNTR 144

Query: 136 HNENQIKVNERREMGLVGIGNEYK---------ELKKRGLCLVPLCMVMNYLA 175
           + +    V       +   G++ K         ELKKRGLC+VPL M+ N++A
Sbjct: 145 YGKTMDNVTSEEIGCITETGSKIKEIMNEEFSAELKKRGLCVVPLSMLSNFIA 196

The following BLAST results are available for this feature:

BLAST of CmoCh01G011980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5BPG5	9.7e-12	39.13	Vascular-related unknown protein 4 OS=Arabidopsis thaliana OX=3702 GN=VUP4 PE=2 ...	[more]
Q9LSZ3	5.3e-10	31.02	Vascular-related unknown protein 1 OS=Arabidopsis thaliana OX=3702 GN=VUP1 PE=2 ...	[more]
Q9C6I7	2.1e-06	28.90	Vascular-related unknown protein 2 OS=Arabidopsis thaliana OX=3702 GN=VUP2 PE=2 ...	[more]

BLAST of CmoCh01G011980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLD8	3.1e-93	100.00	Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111446469 PE=4 SV=1	[more]
A0A6J1J018	4.4e-84	91.57	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111480691 PE=4 SV=1	[more]
A0A6J1FG95	3.9e-56	67.22	Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1	[more]
A0A6J1IHA8	1.1e-55	66.67	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1	[more]
A0A6J1IG62	9.4e-50	63.13	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1	[more]

BLAST of CmoCh01G011980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941072.1	6.3e-93	100.00	vascular-related unknown protein 4-like [Cucurbita moschata]	[more]
KAG7015212.1	5.9e-91	98.29	hypothetical protein SDJN02_22845, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607814.1	8.6e-90	97.71	Vascular-related unknown protein 1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023525426.1	8.9e-87	94.29	vascular-related unknown protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022981625.1	9.2e-84	91.57	vascular-related unknown protein 4-like [Cucurbita maxima]	[more]

BLAST of CmoCh01G011980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54790.1	6.9e-13	39.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G21710.2	3.8e-11	31.02	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT3G21710.1	5.1e-08	37.04	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G50930.1	1.5e-07	28.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 5..173
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 5..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G011980.1	CmoCh01G011980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development