CmoCh01G010830 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G010830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Cmo_Chr01: 9001052 .. 9001252 (-)
RNA-Seq Expression	CmoCh01G010830
Synteny	CmoCh01G010830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGTTATGATTTTGTGTTTGCACCATGCCTATCAACTGTTTGAAGAAATGCCCAACAGAGCTATCATCGCATGGGGAGCTTTGGTGTCATGTTTTGCCTCATATGGCGAACTTTCAAATGCACCAAATTCCTTAATGAATTGGTTTCAGGTAGAACTTGAGCCAACTCCATCATCTTTCTCTCAAATTCCTTAA

mRNA sequence

ATGGAGAGAGTTATGATTTTGTGTTTGCACCATGCCTATCAACTGTTTGAAGAAATGCCCAACAGAGCTATCATCGCATGGGGAGCTTTGGTGTCATGTTTTGCCTCATATGGCGAACTTTCAAATGCACCAAATTCCTTAATGAATTGGTTTCAGGTAGAACTTGAGCCAACTCCATCATCTTTCTCTCAAATTCCTTAA

Coding sequence (CDS)

ATGGAGAGAGTTATGATTTTGTGTTTGCACCATGCCTATCAACTGTTTGAAGAAATGCCCAACAGAGCTATCATCGCATGGGGAGCTTTGGTGTCATGTTTTGCCTCATATGGCGAACTTTCAAATGCACCAAATTCCTTAATGAATTGGTTTCAGGTAGAACTTGAGCCAACTCCATCATCTTTCTCTCAAATTCCTTAA

Protein sequence

MERVMILCLHHAYQLFEEMPNRAIIAWGALVSCFASYGELSNAPNSLMNWFQVELEPTPSSFSQIP

Homology

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BLAST of CmoCh01G010830 vs. TAIR 10
Match: AT4G18520.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 40.0 bits (92), Expect = 8.4e-04
Identity = 16/52 (30.77%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 12  AYQLFEEMPNRAIIAWGALVSCFASYGELSNAPNSLMNWFQVELEPTPSSFS 64
           A+ + +++P+R +++W A++S  +S G  S A + L    Q  +EP P ++S
Sbjct: 439 AFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYS 490

The following BLAST results are available for this feature:

BLAST of CmoCh01G010830 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G010830 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G010830 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G010830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18520.1	8.4e-04	30.77	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..33 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010830.1	CmoCh01G010830.1	mRNA