CmoCh01G010330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G010330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Proline-rich receptor-like protein kinase PERK2
Location	Cmo_Chr01: 8082015 .. 8082452 (+)
RNA-Seq Expression	CmoCh01G010330
Synteny	CmoCh01G010330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCAAAACACTTCCAATCTGGGACGCATATCTCCGCCCCCGTCCCCCAACGGTCACACCGCAGTTATCGTAATCGTTTTCATTTCCTTAGGCTCATGTCTTTTGTTCTTCACATTCGTCGCAGCTGCATTCTTCTGTTGTTTCATCAAAAAGAGAAACAAGAAACCATGTCCACGAGACGAAGTTGCAGAGGTCATCCATGTCGATGGACACAGGAAGGTCCATGAAGATGTCGCACAAGACGCCCACGGGCGGCAGGCTGTGATGGTGACGATCGAGGACGATGTCCATGTCGACGAAATAGCGAAGAAGAAAGAGCATAGGCATGGGTTTGGGTTGCATGGGAAGCATGAAGGAAGCAATTCTAGCACAATCCAAGTGCCACCATCTTCTTCAACTTTGGATTCTAACGTTACCCATCACCAATCTTGA

mRNA sequence

ATGGCCGCTCAAAACACTTCCAATCTGGGACGCATATCTCCGCCCCCGTCCCCCAACGGCTCATGTCTTTTGTTCTTCACATTCGTCGCAGCTGCATTCTTCTGTTGTTTCATCAAAAAGAGAAACAAGAAACCATGTCCACGAGACGAAGTTGCAGAGGTCATCCATGTCGATGGACACAGGAAGGTCCATGAAGATGTCGCACAAGACGCCCACGGGCGGCAGGCTGTGATGGTGACGATCGAGGACGATGTCCATGTCGACGAAATAGCGAAGAAGAAAGAGCATAGGCATGGGTTTGGGTTGCATGGGAAGCATGAAGGAAGCAATTCTAGCACAATCCAAGTGCCACCATCTTCTTCAACTTTGGATTCTAACGTTACCCATCACCAATCTTGA

Coding sequence (CDS)

ATGGCCGCTCAAAACACTTCCAATCTGGGACGCATATCTCCGCCCCCGTCCCCCAACGGCTCATGTCTTTTGTTCTTCACATTCGTCGCAGCTGCATTCTTCTGTTGTTTCATCAAAAAGAGAAACAAGAAACCATGTCCACGAGACGAAGTTGCAGAGGTCATCCATGTCGATGGACACAGGAAGGTCCATGAAGATGTCGCACAAGACGCCCACGGGCGGCAGGCTGTGATGGTGACGATCGAGGACGATGTCCATGTCGACGAAATAGCGAAGAAGAAAGAGCATAGGCATGGGTTTGGGTTGCATGGGAAGCATGAAGGAAGCAATTCTAGCACAATCCAAGTGCCACCATCTTCTTCAACTTTGGATTCTAACGTTACCCATCACCAATCTTGA

Protein sequence

MAAQNTSNLGRISPPPSPNGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

Homology

[Close]

BLAST of CmoCh01G010330 vs. ExPASy Swiss-Prot
Match: C1PGW1 (Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7A OS=Zinnia violacea OX=34245 GN=TED7 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 14  PPPSPNG----------SC-LLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRK 73
           PPPSP+           SC  +FF   A A   CF+KK+ KK   +   AE IH D HRK
Sbjct: 177 PPPSPSNHSTTIVVIFVSCGGVFFLAFAMAALWCFLKKKKKKMVQK---AENIHFDEHRK 236

Query: 74  VHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKE-HRHGFGLHGKHEGSNSSTIQVPPSSS 130
           V E + Q  HG +  ++++EDD+H++E  KK E      GLH  +   N+  I     SS
Sbjct: 237 VTERIEQGPHGTETAILSVEDDIHIEEDIKKSELENFRKGLHLNY--GNTYNIDTGKPSS 296

[Close]

BLAST of CmoCh01G010330 vs. ExPASy Swiss-Prot
Match: Q9FI79 (Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7 OS=Arabidopsis thaliana OX=3702 GN=TED7 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 14  PPPSP------------NGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHR 73
           PPP+P            +   L F  F+AAA F C++KKR K        AE+I  D H 
Sbjct: 87  PPPTPAPGHHVIIVVVISLGSLFFLAFLAAALF-CYLKKRRKS----STKAEIIEFDEHL 146

Query: 74  KVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKE 96
           KV E + Q  HG Q  +V +E+D+H+ E   K E
Sbjct: 147 KVQETIVQGPHGEQTRVVMLEEDIHLVEDIHKTE 175

[Close]

BLAST of CmoCh01G010330 vs. ExPASy Swiss-Prot
Match: C1PGW0 (Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6 OS=Zinnia violacea OX=34245 GN=TED6 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.6e-06
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 24 LFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED 83
          +F   +AA   CC IKK   K     E  E++HVD H +VHE++ Q  +G + V +T++D
Sbjct: 14 VFVLGIAAFVLCCLIKK--WKCSKAIEKNEMVHVDQHLQVHENILQGPNGMKTVAITVDD 73

Query: 84 DVHVDE 90
          D+HV +
Sbjct: 74 DLHVHD 77

[Close]

BLAST of CmoCh01G010330 vs. ExPASy TrEMBL
Match: A0A6J1EEE4 (uncharacterized protein LOC111433458 OS=Cucurbita moschata OX=3662 GN=LOC111433458 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 132/145 (91.03%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MAAQNTSNLGRISPPPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCP 60
           MAAQNTSNLGRISPPPSPN             GSCLLFFTFVAAAFFCCFIKKRNKKPCP
Sbjct: 1   MAAQNTSNLGRISPPPSPNGHTAVIVIVFISLGSCLLFFTFVAAAFFCCFIKKRNKKPCP 60

Query: 61  RDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEHRHGFGLHGKHE 120
           RDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEHRHGFGLHGKHE
Sbjct: 61  RDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEHRHGFGLHGKHE 120

Query: 121 GSNSSTIQVPPSSSTLDSNVTHHQS 133
           GSNSSTIQVPPSSSTLDSNVTHHQS
Sbjct: 121 GSNSSTIQVPPSSSTLDSNVTHHQS 145

[Close]

BLAST of CmoCh01G010330 vs. ExPASy TrEMBL
Match: A0A6J1J036 (uncharacterized protein LOC111480702 OS=Cucurbita maxima OX=3661 GN=LOC111480702 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 126/149 (84.56%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MAAQNTSNLGRISPPPSPN-----------------GSCLLFFTFVAAAFFCCFIKKRNK 60
           MAAQNTSNLGRI PPP P+                 GSCLLFFTFVAAAFFCCFIKKRNK
Sbjct: 1   MAAQNTSNLGRIPPPPPPSPSPNGHTAVIVIVFISLGSCLLFFTFVAAAFFCCFIKKRNK 60

Query: 61  KPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEHRHGFGLH 120
           KPCPRDEVAEVI VDGHRKVHEDVAQDAHGRQAV VTIEDDVH+DEIAKKKEHRHGFGLH
Sbjct: 61  KPCPRDEVAEVIRVDGHRKVHEDVAQDAHGRQAVTVTIEDDVHIDEIAKKKEHRHGFGLH 120

Query: 121 GKHEGSNSSTIQVPPSSSTLDSNVTHHQS 133
           GKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Sbjct: 121 GKHEGSNSSTIQVPPSSSTLDSNVTHHQS 149

[Close]

BLAST of CmoCh01G010330 vs. ExPASy TrEMBL
Match: A0A0A0K4D1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G320040 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.4e-34
Identity = 88/151 (58.28%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 1   MAAQNTSNLGRI-----------SPPPSPN-------------GSCLLFFTFVAAAFFCC 60
           MA +N+SNL RI           SPPPSP+             GSCL F  FVAAA  CC
Sbjct: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAA-VCC 60

Query: 61  FIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEH 120
           FIKKR KK CP+ EV E IH+DGHRKVHEDVA+  HG+QAV+VTIEDD+H+DEI KKKEH
Sbjct: 61  FIKKRKKKSCPQ-EVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEH 120

Query: 121 RHGFGLHGK-HEG----SNSSTIQVPPSSST 123
            HG GLHGK HEG    +NS+T++V  SSS+
Sbjct: 121 GHGHGLHGKQHEGGSHNNNSTTMEVAASSSS 149

[Close]

BLAST of CmoCh01G010330 vs. ExPASy TrEMBL
Match: A0A5D3BXC9 (Proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00040 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.7e-32
Identity = 84/151 (55.63%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 1   MAAQNTSNLGRI-----------SPPPSPN-------------GSCLLFFTFVAAAFFCC 60
           MA +N+SNL RI            PPPSP+             GSCL F  FVA    CC
Sbjct: 1   MAVENSSNLNRIPPPPPFKPSPLPPPPSPDGHTAIIVIVFISLGSCLFFVAFVATV-VCC 60

Query: 61  FIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKEH 120
           FIKKR KK CP+ EV E I +DGHRKVHEDVA+  HG+QA++VTIEDDVH+DEI KKKEH
Sbjct: 61  FIKKRKKKSCPQ-EVVEAIRIDGHRKVHEDVAEVGHGQQAMVVTIEDDVHIDEIVKKKEH 120

Query: 121 RHGFGLHGK-HEG----SNSSTIQVPPSSST 123
            HG GLHGK HEG    +NS+T++V  SSS+
Sbjct: 121 GHGHGLHGKQHEGGSHNNNSTTMEVAASSSS 149

[Close]

BLAST of CmoCh01G010330 vs. ExPASy TrEMBL
Match: A0A6J1DM43 (uncharacterized protein LOC111021715 OS=Momordica charantia OX=3673 GN=LOC111021715 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.9e-23
Identity = 64/105 (60.95%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 20  GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVA--QDAHGRQAV 79
           G+C  FF  V AA  C  IKK+ KK C   EVAEVIHVDGHRK+HE  A     HG QAV
Sbjct: 19  GACFFFFALVPAAICCFIIKKKKKKSCGHQEVAEVIHVDGHRKIHEAAAGGGGGHGPQAV 78

Query: 80  MVTIEDDVHVDEIAKKKEHRHGFG-LHGKHE-GSNSSTIQVPPSS 121
           +VTIED+V +DE+ KKKEH  G G LHGKHE G NSS+++V PSS
Sbjct: 79  VVTIEDEVCIDEVMKKKEHGVGHGLLHGKHEVGGNSSSMEVAPSS 123

[Close]

BLAST of CmoCh01G010330 vs. TAIR 10
Match: AT5G48920.1 (tracheary element differentiation-related 7 )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 14  PPPSP------------NGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHR 73
           PPP+P            +   L F  F+AAA F C++KKR K        AE+I  D H 
Sbjct: 87  PPPTPAPGHHVIIVVVISLGSLFFLAFLAAALF-CYLKKRRKS----STKAEIIEFDEHL 146

Query: 74  KVHEDVAQDAHGRQAVMVTIEDDVHVDEIAKKKE 96
           KV E + Q  HG Q  +V +E+D+H+ E   K E
Sbjct: 147 KVQETIVQGPHGEQTRVVMLEEDIHLVEDIHKTE 175

The following BLAST results are available for this feature:

BLAST of CmoCh01G010330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C1PGW1	6.9e-10	35.94	Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7A OS=Zinnia violacea OX=34245...	[more]
Q9FI79	1.9e-07	37.23	Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7 OS=Arabidopsis thaliana OX=3...	[more]
C1PGW0	4.6e-06	39.39	Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6 OS=Zinnia violacea OX=34245 ...	[more]

BLAST of CmoCh01G010330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEE4	2.2e-67	91.03	uncharacterized protein LOC111433458 OS=Cucurbita moschata OX=3662 GN=LOC1114334...	[more]
A0A6J1J036	1.9e-63	84.56	uncharacterized protein LOC111480702 OS=Cucurbita maxima OX=3661 GN=LOC111480702...	[more]
A0A0A0K4D1	5.4e-34	58.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G320040 PE=4 SV=1	[more]
A0A5D3BXC9	8.7e-32	55.63	Proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1DM43	1.9e-23	60.95	uncharacterized protein LOC111021715 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of CmoCh01G010330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48920.1	1.3e-08	37.23	tracheary element differentiation-related 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..132
None	No IPR available	PANTHER	PTHR35697:SF1	OS08G0108300 PROTEIN	coord: 22..127
IPR044950	Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6/7	PANTHER	PTHR35697	OS08G0108300 PROTEIN	coord: 22..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010330.1	CmoCh01G010330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009834	plant-type secondary cell wall biogenesis
cellular_component	GO:0016021	integral component of membrane