CmoCh01G010240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G010240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	rRNA processing protein-related
Location	Cmo_Chr01: 7984705 .. 7985631 (-)
RNA-Seq Expression	CmoCh01G010240
Synteny	CmoCh01G010240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTATCAGATAAAGATGCTAGGTTCTTAAATGAGGATACAATGGAAGATGATGATCTTGGTAACGAGGATTCGGATTTTGGATCTGAATCTGAATCTGAATCCGAATCTGAATCTGAATCTGGGGAGGAAGAGGAGGAGGTAAAATTGTCTGAACCATCAAAGACGGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGAAGATATTAGCTGGCCGAAAAATGTGGAATGGATACACAGGCTATGTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAACTTGCATTCTATACACAGGCTTTGCAGGGGACGAGAATGGCCCTCGAGAAGTTCCAATCTTTAGGACTCCCTTTTCTCAGGCCTTCAGACTATTATGCAGAGATGGTGAAGACAGATACTCACATGGGAAAAGTGAAAGGTCGGTTGCTGGCCGAGCAGAGGAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAGTTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGAGGAGATTGAATCGGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGATATGGAGTTGTCCTTTGAAGATGGAAAGGCGTTCGAGAGATCTGGTGGCAAGAAGAGGCCCGGGGTGTCTCCTGGCGATCGCTCGGGAGGGAAGGCGAGACACAGAGATGGAGGAAAAGGGAAAAATCTGAAGAAAAAGAAAGATTTCAGAGATTCCAAGTTCGGATTTGGCGGGAGAAAAAGTTTGAAAAAACAGAACACGGCCGAGACAACAAATGACATTAGGGGATTCAACAGCGACAGTTTGTTAAGCAACAAAAGAAGGAAGAGGTCATAG

mRNA sequence

ATGGGTGTATCAGATAAAGATGCTAGGTTCTTAAATGAGGATACAATGGAAGATGATGATCTTGGTAACGAGGATTCGGATTTTGGATCTGAATCTGAATCTGAATCCGAATCTGAATCTGAATCTGGGGAGGAAGAGGAGGAGGTAAAATTGTCTGAACCATCAAAGACGGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGAAGATATTAGCTGGCCGAAAAATGTGGAATGGATACACAGGCTATGTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAACTTGCATTCTATACACAGGCTTTGCAGGGGACGAGAATGGCCCTCGAGAAGTTCCAATCTTTAGGACTCCCTTTTCTCAGGCCTTCAGACTATTATGCAGAGATGGTGAAGACAGATACTCACATGGGAAAAGTGAAAGGTCGGTTGCTGGCCGAGCAGAGGAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAGTTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGAGGAGATTGAATCGGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGATATGGAGTTGTCCTTTGAAGATGGAAAGGCGTTCGAGAGATCTGGTGGCAAGAAGAGGCCCGGGGTGTCTCCTGGCGATCGCTCGGGAGGGAAGGCGAGACACAGAGATGGAGGAAAAGGGAAAAATCTGAAGAAAAAGAAAGATTTCAGAGATTCCAAGTTCGGATTTGGCGGGAGAAAAAGTTTGAAAAAACAGAACACGGCCGAGACAACAAATGACATTAGGGGATTCAACAGCGACAGTTTGTTAAGCAACAAAAGAAGGAAGAGGTCATAG

Coding sequence (CDS)

ATGGGTGTATCAGATAAAGATGCTAGGTTCTTAAATGAGGATACAATGGAAGATGATGATCTTGGTAACGAGGATTCGGATTTTGGATCTGAATCTGAATCTGAATCCGAATCTGAATCTGAATCTGGGGAGGAAGAGGAGGAGGTAAAATTGTCTGAACCATCAAAGACGGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGAAGATATTAGCTGGCCGAAAAATGTGGAATGGATACACAGGCTATGTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAACTTGCATTCTATACACAGGCTTTGCAGGGGACGAGAATGGCCCTCGAGAAGTTCCAATCTTTAGGACTCCCTTTTCTCAGGCCTTCAGACTATTATGCAGAGATGGTGAAGACAGATACTCACATGGGAAAAGTGAAAGGTCGGTTGCTGGCCGAGCAGAGGAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAGTTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGAGGAGATTGAATCGGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGATATGGAGTTGTCCTTTGAAGATGGAAAGGCGTTCGAGAGATCTGGTGGCAAGAAGAGGCCCGGGGTGTCTCCTGGCGATCGCTCGGGAGGGAAGGCGAGACACAGAGATGGAGGAAAAGGGAAAAATCTGAAGAAAAAGAAAGATTTCAGAGATTCCAAGTTCGGATTTGGCGGGAGAAAAAGTTTGAAAAAACAGAACACGGCCGAGACAACAAATGACATTAGGGGATTCAACAGCGACAGTTTGTTAAGCAACAAAAGAAGGAAGAGGTCATAG

Protein sequence

MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIYNADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLLSNKRRKRS

Homology

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BLAST of CmoCh01G010240 vs. ExPASy Swiss-Prot
Match: Q9LUJ5 (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.2e-86
Identity = 186/298 (62.42%), Postives = 233/298 (78.19%), Query Frame = 0


Query: 11  LNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIYNADGLLDKLE 70
           L ED + DD++   D D  ++SE+ES S+S++ E E   KL+EP+KTAIYN DGLLDKL+
Sbjct: 3   LEEDIVSDDEMNMIDEDDATDSEAESLSDSDT-ENEITEKLAEPTKTAIYNRDGLLDKLQ 62

Query: 71  DISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGLPFLR 130
           DISWP++V+W H+L ++IDQ   VDVNDDLARE AFYTQAL+GTR A  K   +G+ FLR
Sbjct: 63  DISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLR 122

Query: 131 PSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQK 190
           P++YYAEMVK+D HM KVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK+KERAK+K
Sbjct: 123 PANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEK 182

Query: 191 KEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSGGKAR 250
           K+ IESVKKWRKQRQ+SGF+  DK G+ EL FE GK+F+R GGKKRPGVSPGDRSGGK R
Sbjct: 183 KDNIESVKKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGR 242

Query: 251 HRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNSDSLLSNKRRKR 308
                  +   KK++FRDSKFG GGRK L KQNTAETTND + GF       NKR+KR
Sbjct: 243 ----PTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293

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BLAST of CmoCh01G010240 vs. ExPASy Swiss-Prot
Match: P36049 (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-19
Identity = 93/309 (30.10%), Postives = 154/309 (49.84%), Query Frame = 0


Query: 12  NEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPS-----------KTAIY 71
           +ED  E ++   ED D  ++ ESE   E E  EEE++V LS+             K  + 
Sbjct: 140 SEDDSESENDSEEDEDVVAKEESE---EKEEQEEEQDVPLSDVEFDSDADVVPHHKLTVN 199

Query: 72  NADGLLDKLE--DISWPKNVEWIHR-LCLDIDQEKEV-DVNDDLARELAFYTQALQGTRM 131
           N   +   LE   + W K+    H+ +  + + ++ + D+ DD  RELAFY Q+L    +
Sbjct: 200 NTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFYKQSLDAVLV 259

Query: 132 ALEKFQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAK 191
           A ++ + L +PF RP DY+AEMVK+D HM K+KG+L+ E    +  EE R+ R+ KK  K
Sbjct: 260 ARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGK 319

Query: 192 EIQAQKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKR 251
           ++Q   L++R  +K+E +E +K  + +R+ +     +    +E   E GK F+R     R
Sbjct: 320 QVQNATLQKRQLEKRETLEKIKSLKNKRKHNEIDHSEFNVGVEEEVE-GKRFDRG----R 379

Query: 252 PGVSPGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNS 306
           P                         K+  +++K+G GG K  K++N A ++ D+ GF+S
Sbjct: 380 P-----------------------NGKRAAKNAKYGQGGMKRFKRKNDATSSADVSGFSS 417

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BLAST of CmoCh01G010240 vs. ExPASy Swiss-Prot
Match: Q9D903 (Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-17
Identity = 90/295 (30.51%), Postives = 154/295 (52.20%), Query Frame = 0


Query: 30  SESESESESESESGEEEEE------------VKLSEPSKTAIYNADGLLDKLEDISWPKN 89
           SES+SES++   S +E ++            V L +P K A+ +  GL   L +  + ++
Sbjct: 7   SESDSESDACLASDQELQDAFSRGLLKPGLNVVLEKPKK-AVNDVSGLKQCLAE--FRRD 66

Query: 90  VEWIHRLCLDI----------------DQEKEVDVNDDLARELAFYTQALQGTRMALEKF 149
           +EW+ RL + +                DQ+K V+  DD  RE++FY QA       L + 
Sbjct: 67  LEWVERLDVTLGPVPEVSETQPTPQNQDQKKGVNPEDDFQREMSFYRQAQAAVLAVLPRL 126

Query: 150 QSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQ 209
             L +P  RP+DY+AEM K+D  M K++ +L  +Q  ME++E+ ++ R  +K  K++Q +
Sbjct: 127 HQLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKKVQTE 186

Query: 210 KLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSP 269
            L++R ++K   + ++KK++K     GF+  DK   ++    D K  ERS          
Sbjct: 187 VLQKRQREKAHMMNAIKKYQK-----GFS--DK---LDFLEGDQKPVERSA--------- 246

Query: 270 GDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNS 297
             ++GGK +     KG N K++  +++ KFGFGG+K   K NT E+ +D+  F +
Sbjct: 247 --KAGGKGQQM--SKGPNAKRR--YKNQKFGFGGKKKGSKWNTKESYDDVSSFRA 273

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BLAST of CmoCh01G010240 vs. ExPASy Swiss-Prot
Match: Q09958 (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 GN=C18A3.3 PE=1 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 6.1e-17
Identity = 95/293 (32.42%), Postives = 150/293 (51.19%), Query Frame = 0


Query: 11  LNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIYNADG-LLDKL 70
           + E  ME  D+   +SD G + E E ++   +G  ++ + +    K  I N    + +KL
Sbjct: 38  IEEKPMEAMDIEEVESD-GDDDERELQAAFAAGLLKDGLNIQVAKKRPIINKSAEMKEKL 97

Query: 71  EDISWPKNVEWIHRLCL---DIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGL 130
            +I+  K++ W+  L +     + +K+V+ NDD  REL FY QA +  ++A  +  +LG+
Sbjct: 98  AEIT--KDLPWVETLEVVTPHSEMDKKVE-NDDFQRELNFYKQAEKAVQIAYPRLLNLGI 157

Query: 131 PFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKER 190
             LRP+DYYAEM K+DTHM KV+ RLL  Q   E  E  R+ RE KK A ++Q + L  +
Sbjct: 158 KVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREEKKFAVKVQKEVLAAK 217

Query: 191 AKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSG 250
             +KK   E+VKK +K  ++           +E    + K          P  + GDR G
Sbjct: 218 NTEKKNLAEAVKKHKKGMKQ----------QLEDMLNNVKRHGLDQDDDAPTGAFGDRLG 277

Query: 251 GKARHRDGGKGKN------LKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRG 294
           G+     GG G+        + K+  +  KFG+GG+K   K+N  E+ ND+ G
Sbjct: 278 GRGGAGRGGAGRGGSMRNAGELKRKLKSDKFGYGGKKKGMKRNNKESFNDLFG 316

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BLAST of CmoCh01G010240 vs. ExPASy Swiss-Prot
Match: Q9I8J6 (Probable rRNA-processing protein EBP2 OS=Xenopus laevis OX=8355 GN=ebna1bp2 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 84/295 (28.47%), Postives = 141/295 (47.80%), Query Frame = 0


Query: 17  EDDDLGNEDSDFGSESESESESESESGEEEEEVKLS---EPSKTAIYNADGLLDKLEDIS 76
           ED+     DSDF +   ++ E +    + + +  L+   E  K    +A GL   L+D+ 
Sbjct: 5   EDESSPESDSDFDASELTDKELQEAFSQGKLKPGLNVVLEGKKKPFNDASGLKQSLKDLK 64

Query: 77  WPKNVEWIHRLCLDID--------------QEKEVDVNDDLARELAFYTQALQGTRMALE 136
               + W+ RL + +D                 +++  DD  RE+ FY QA      +L 
Sbjct: 65  --NELPWVERLDVTVDPVVDTTGQNGQTDPNTSDINAEDDFQREMCFYRQAQAAVLYSLP 124

Query: 137 KFQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQ 196
           + + L +   RP DY+AEM KTD HM K++ +L  +Q  ME++E+ ++ R  +K  K++Q
Sbjct: 125 RLRKLKVATKRPDDYFAEMAKTDQHMQKIRHKLQLKQASMEKSEKAKQLRALRKYGKKVQ 184

Query: 197 AQKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGV 256
            + L++R K+K   +  +KK++            KG   +L F +G        KK P  
Sbjct: 185 VEVLQKRQKEKSAMVTQIKKYQ------------KGLSDKLDFLEGD----QTPKKTPNK 244

Query: 257 SPGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGF 295
           + G  +  KA++           K+ ++D KFGFGG+K   K NT  + ND+ GF
Sbjct: 245 TGGSAAAQKAKNTPSA-------KRRYKDQKFGFGGKKKGSKGNTKGSYNDVSGF 274

[Close]

BLAST of CmoCh01G010240 vs. ExPASy TrEMBL
Match: A0A6J1EEP4 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433474 PE=3 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 2.4e-157
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60
           MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240
           QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240

Query: 241 PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL 300
           PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL
Sbjct: 241 PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL 300

Query: 301 SNKRRKRS 309
           SNKRRKRS
Sbjct: 301 SNKRRKRS 308

[Close]

BLAST of CmoCh01G010240 vs. ExPASy TrEMBL
Match: A0A6J1IZU9 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480644 PE=3 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.4e-149
Identity = 295/308 (95.78%), Postives = 299/308 (97.08%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60
           MGVSDKDARFLNEDTME+DDL NEDSDF        ESESESGEEEEEVKLSEPSKTAIY
Sbjct: 1   MGVSDKDARFLNEDTMENDDLSNEDSDF--------ESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240
           QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGG+MELSFEDGKAFERSGGKKRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGEMELSFEDGKAFERSGGKKRPGVS 240

Query: 241 PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL 300
           PGDRSGGKARHR+GGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+DSLL
Sbjct: 241 PGDRSGGKARHRNGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNDSLL 300

Query: 301 SNKRRKRS 309
           SNKRRKRS
Sbjct: 301 SNKRRKRS 300

[Close]

BLAST of CmoCh01G010240 vs. ExPASy TrEMBL
Match: A0A5D3DB33 (Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001370 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.4e-133
Identity = 272/310 (87.74%), Postives = 286/310 (92.26%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60
           MGVS KDA FLNEDT+EDDDL +EDS+F    ESESES SES EEEE+V+LSEPSK AIY
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEF----ESESESGSESEEEEEDVELSEPSKNAIY 69

Query: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKL DISWP+NVEWIH+L  DIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 70  NADGLLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 129

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRPSDYYAEMVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQA
Sbjct: 130 FQSLGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQA 189

Query: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240
           QK KERAKQKKEEIESVKKWRKQRQK+ FAGGDKGGDM+ SFEDGK FERSGGKKRPGVS
Sbjct: 190 QKQKERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVS 249

Query: 241 PGDRSGGKARH--RDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDS 300
           PGDRSGGKARH    GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+ S
Sbjct: 250 PGDRSGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGS 309

Query: 301 LLSNKRRKRS 309
           L +NKRRK+S
Sbjct: 310 LSNNKRRKKS 315

[Close]

BLAST of CmoCh01G010240 vs. ExPASy TrEMBL
Match: A0A1S3CT69 (probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC103504670 PE=3 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 4.1e-133
Identity = 272/310 (87.74%), Postives = 286/310 (92.26%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60
           MGVS KDA FLNEDT+EDDDL +EDS+F    ESESES SES EEEE+V+LSEPSK AIY
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEF----ESESESGSESEEEEEDVELSEPSKNAIY 60

Query: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKL DISWP+NVEWIH+L  DIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 61  NADGLLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRPSDYYAEMVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQA
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240
           QK KERAKQKKEEIESVKKWRKQRQK+ FAGGDKGGDM+ SFEDGK FERSGGKKRPGVS
Sbjct: 181 QKQKERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVS 240

Query: 241 PGDRSGGKARH--RDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDS 300
           PGDRSGGKARH    GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+ S
Sbjct: 241 PGDRSGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGS 300

Query: 301 LLSNKRRKRS 309
           L +NKRRK+S
Sbjct: 301 LSNNKRRKKS 306

[Close]

BLAST of CmoCh01G010240 vs. ExPASy TrEMBL
Match: A0A6J1H264 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459763 PE=3 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 5.5e-130
Identity = 268/308 (87.01%), Postives = 282/308 (91.56%), Query Frame = 0


Query: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60
           MGVSD+   FLNEDTMEDDDL +EDSDFGSESESES       EEEE+VKLSEPSK AIY
Sbjct: 1   MGVSDEKDSFLNEDTMEDDDLDSEDSDFGSESESES-------EEEEDVKLSEPSKNAIY 60

Query: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKL DISWP+NV WIH+L LDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 61  NADGLLDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRP DYYAEMVKTDTHM KVKGRLL EQ+KMEEAEERRKAREAKKLAKEIQA
Sbjct: 121 FQSLGLPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240
           QKLKERAKQKKEEIESVKKWRKQRQKSGF+  DKGG+M+LSFEDGKAF+RSGGKKRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFDRSGGKKRPGVS 240

Query: 241 PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL 300
           PGDRSGGKARH  GGKGKN  KK+DFRDSKFGFGGRKS+KKQNTAETTNDIRGFN+ SL 
Sbjct: 241 PGDRSGGKARHGGGGKGKN-PKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLS 298

Query: 301 SNKRRKRS 309
           SNKRRK+S
Sbjct: 301 SNKRRKKS 298

[Close]

BLAST of CmoCh01G010240 vs. TAIR 10
Match: AT3G22660.1 (rRNA processing protein-related )

HSP 1 Score: 318.9 bits (816), Expect = 4.4e-87
Identity = 186/298 (62.42%), Postives = 233/298 (78.19%), Query Frame = 0


Query: 11  LNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIYNADGLLDKLE 70
           L ED + DD++   D D  ++SE+ES S+S++ E E   KL+EP+KTAIYN DGLLDKL+
Sbjct: 3   LEEDIVSDDEMNMIDEDDATDSEAESLSDSDT-ENEITEKLAEPTKTAIYNRDGLLDKLQ 62

Query: 71  DISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGLPFLR 130
           DISWP++V+W H+L ++IDQ   VDVNDDLARE AFYTQAL+GTR A  K   +G+ FLR
Sbjct: 63  DISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLR 122

Query: 131 PSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQK 190
           P++YYAEMVK+D HM KVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK+KERAK+K
Sbjct: 123 PANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEK 182

Query: 191 KEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSGGKAR 250
           K+ IESVKKWRKQRQ+SGF+  DK G+ EL FE GK+F+R GGKKRPGVSPGDRSGGK R
Sbjct: 183 KDNIESVKKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGR 242

Query: 251 HRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNSDSLLSNKRRKR 308
                  +   KK++FRDSKFG GGRK L KQNTAETTND + GF       NKR+KR
Sbjct: 243 ----PTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293

The following BLAST results are available for this feature:

BLAST of CmoCh01G010240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ5	6.2e-86	62.42	Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN...	[more]
P36049	6.5e-19	30.10	rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]
Q9D903	1.6e-17	30.51	Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 ...	[more]
Q09958	6.1e-17	32.42	Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 ...	[more]
Q9I8J6	1.4e-16	28.47	Probable rRNA-processing protein EBP2 OS=Xenopus laevis OX=8355 GN=ebna1bp2 PE=2...	[more]

BLAST of CmoCh01G010240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEP4	2.4e-157	100.00	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IZU9	2.4e-149	95.78	probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3DB33	2.4e-133	87.74	Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CT69	4.1e-133	87.74	probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1H264	5.5e-130	87.01	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CmoCh01G010240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22660.1	4.4e-87	62.42	rRNA processing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..298
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..237
None	No IPR available	PANTHER	PTHR13028:SF2	BNAA01G24550D PROTEIN	coord: 29..307
IPR008610	Eukaryotic rRNA processing	PFAM	PF05890	Ebp2	coord: 34..300 e-value: 1.9E-73 score: 247.4
IPR008610	Eukaryotic rRNA processing	PANTHER	PTHR13028	RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED	coord: 29..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010240.1	CmoCh01G010240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034399	nuclear periphery
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor