CmoCh01G010210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G010210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 7933526 .. 7935129 (+)
RNA-Seq ExpressionCmoCh01G010210
SyntenyCmoCh01G010210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGGGTTGGTGATGAAGCCCCTATTTTGGATAGGAAGAAGAAAAGGTTTACAAAACAAGGCCTTCAGTTCAGTCAACCTAATGGTTGCAATAATGTTGTGATTGCTCAATTACTCATTCCACCTAATGGTTGCAATAATGTTGTGATTGCTCAATTACTCTCTTTCGTAGTTTTAGGTATCTTTTTATTCTTACCACTGAGGAATTTTCTGTGTTCTCCCTGACTTATTTTTGTTGATGTCGTCTTAACATGTGCTTTTGGATCTCCTTTTTATCATCATTCTGGATCAACTATAATTACCCCATTCCAACTATGTACATGTTAGTACCATATCTCTGCTAGCTGTTGCACAATATCCTGTCTGCATCAACACATTAGAACTGGTATCTTTTAATCTGCCATATATGCAATTACATTTTCCTTGACCCAGACTCCTCTGCAAACGTGTTTGGTGTCTAAAAAGAGTACGCTCCCTTTTTTCTTTTCTCACATTTCCTTCTGTTGAGTATAATTAAATTAACCATTCCCTTCTGTAAAATATAGGTGGCATGCTGTTGCATCATGGACTTGGAATGCTCAAGATGAAACATGTGGAATTTGTAGGATGGCTTTTGATGGTTGTTGCCCTGATTGCAAACTCCCCGGGGATGATTGCCCATTGAGTGAGTTAGCTAGCTTTGTCTTCCTAACCTCATATACTTTCTTTCCTGCCATAAATAATTGCACCGCACAGTTTAGCACAGATGATTTGTGATGCTTAATATCATGTGTGAGTGTGTGTGTATTTAACTCACATACATGCAAGTGACCTCAAAATACCATTTAGTTGGTTCTTTAATTAACAAGAAAATGAGGCTGCACCCTGTTCTAATTCCAGATTGGTAATCATGTTTGGATTAGTTATCTCATTTCCCTTTAAACGTTTCTTTTTCTTAGAACAAGATGGTAAAGACCCCTCATTCAGTTTTTCTTTAAATGCAGTTTGGGGTGCATGCAACCATGCTTTCCATCTTCATTGCATCCTTAAATGGGTGAATGCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGGTGAGAGCACAATTGTATTACTTTATTTACGTTACATTTGTCCAGCGCATGACTTGATTGAGAATTGAAACAGAGCATGTGTTTTCTCGTGTGCTTGAATTTTTAAACACTTCTAGTTGGCTATATGGAATGTGCATGGTTGAAGTTCCATCCTACCAGGTTTAGATGATGTGTGAAAAAATCATTAAACCCTTGTCCTTTCTGTCCAATTATGCTCATTATACATTTTTTTAAACGCACCTCATCTCTTTCCAGGTAATTAAGTAGTCAAAAAAACAAAACATAGCATAGAGACATCTAAACAATTTAGGATAAAGACGCTACAAATTCATAATCAATGAAATGAATTATATTTTGGGGGAAAAATTGTATTCCTCTAAATATTTTAATGTTTTCAACCATACAGAATTAGATGATGTTTAGATTTAAAAATACATACAAGTATTTTTTTTATAAAATTATTAACACATTTAGTCAGCTTAGGGCCTGTGGGATTGCACGAGAGGGAG

mRNA sequence

GTTGGGGTTGGTGATGAAGCCCCTATTTTGGATAGGAAGAAGAAAAGGTTTACAAAACAAGGCCTTCAGTTCAGTCAACCTAATGGTTGCAATAATGTTGTGATTGCTCAATTACTCATTCCACCTAATGGTTGCAATAATGTTGTGATTGCTCAATTACTCTCTTTCGTAGTTTTAGGTGGCATGCTGTTGCATCATGGACTTGGAATGCTCAAGATGAAACATGTGGAATTTGTAGGATGGCTTTTGATGGTTGTTGCCCTGATTGCAAACTCCCCGGGGATGATTGCCCATTGATTTGGGGTGCATGCAACCATGCTTTCCATCTTCATTGCATCCTTAAATGGGTGAATGCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGGTGAGAGCACAATTGTATTACTTTATTTACGTTACATTTGTCCAGCGCATGACTTGATTGAGAATTGAAACAGAGCATGTGTTTTCTCGTGTGCTTGAATTTTTAAACACTTCTAGTTGGCTATATGGAATGTGCATGGTTGAAGTTCCATCCTACCAGGTTTAGATGATGTGTGAAAAAATCATTAAACCCTTGTCCTTTCTGTCCAATTATGCTCATTATACATTTTTTTAAACGCACCTCATCTCTTTCCAGGTAATTAAGTAGTCAAAAAAACAAAACATAGCATAGAGACATCTAAACAATTTAGGATAAAGACGCTACAAATTCATAATCAATGAAATGAATTATATTTTGGGGGAAAAATTGTATTCCTCTAAATATTTTAATGTTTTCAACCATACAGAATTAGATGATGTTTAGATTTAAAAATACATACAAGTATTTTTTTTATAAAATTATTAACACATTTAGTCAGCTTAGGGCCTGTGGGATTGCACGAGAGGGAG

Coding sequence (CDS)

GTTGGGGTTGGTGATGAAGCCCCTATTTTGGATAGGAAGAAGAAAAGGTTTACAAAACAAGGCCTTCAGTTCAGTCAACCTAATGGTTGCAATAATGTTGTGATTGCTCAATTACTCATTCCACCTAATGGTTGCAATAATGTTGTGATTGCTCAATTACTCTCTTTCGTAGTTTTAGGTGGCATGCTGTTGCATCATGGACTTGGAATGCTCAAGATGAAACATGTGGAATTTGTAGGATGGCTTTTGATGGTTGTTGCCCTGATTGCAAACTCCCCGGGGATGATTGCCCATTGA

Protein sequence

VGVGDEAPILDRKKKRFTKQGLQFSQPNGCNNVVIAQLLIPPNGCNNVVIAQLLSFVVLGGMLLHHGLGMLKMKHVEFVGWLLMVVALIANSPGMIAH
Homology
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BLAST of CmoCh01G010210 vs. ExPASy TrEMBL
Match: A0A6J1EKP8 (uncharacterized protein LOC111433475 OS=Cucurbita moschata OX=3662 GN=LOC111433475 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 58  VLGGMLLHHGLGMLKMKHVEFVGWLLMVVALIANSPGMIAH 99
           +L GMLLHHGLGMLKMKHVEFVGWLLMVVALIANSPGMIAH
Sbjct: 99  ILSGMLLHHGLGMLKMKHVEFVGWLLMVVALIANSPGMIAH 139

The following BLAST results are available for this feature:
BLAST of CmoCh01G010210 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G010210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EKP81.9e-1295.12uncharacterized protein LOC111433475 OS=Cucurbita moschata OX=3662 GN=LOC1114334... [more]
BLAST of CmoCh01G010210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G010210.1CmoCh01G010210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane