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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATGATTCCTCACATTTTGAACTTAAGATCAGCCCTACCAGAGAGGATGATCCTTCCTCAACCTTTGAGCTTCACTTGCTCAAGACCACTTCCACTCATTCTTTCTTCTCTGATGAAACCAATTCCATGTTCCTTCTCACTGCCAAACTCCCAGGTCCGTCCATCCATCCATCCATCCATCCATTGTTTCTCTTTCTCTCTCTCTCTCTCTCATTTCTCTCATTTTCCTGTTGCAGGTTTTGCAAGAGACGACATTGTGATAACTATCAATGGAAGCGGTACTCGGATCGAGATTAGTTGGGGACAACCTGTTCAGAAAATGGAGATTACGAGATGGACGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATCTTTCGAATTCCAGATGGTGTGATTTTGGATGAAATCAAGGCCACTTATAATGATGAAAAGTCCATTTTGAAGATTTTGATGCCCAAATTGGAGGAGGGGATCCTTGGAGTAGGAATTCAAGAAGTGAAGGAAAAGGAAGCTGGCGAAGCCACGTTTGAATCTCAGGATTCTGAAGCTGAGGCGATTCCACATACACCTACAGACCTTGAGACTCCGGAAACGGGCAAAGAGACCAAATTAATTGAAGATACTCATGGAAATGGAGAATTTGGAGGAGAAAATGCCAAGCGGGAAGCATTTTCCAAGATGGAATATGCAGCAGAAACAACCCCAGAAGAGATCGAGAAGCTGAAGGGCAATGAGATGGAAGATACCGATGGAGGTTCCAATGACTACTCTGAATGTGAACAACTAGAAACAGGAGCAACAAAAGCTACAGAGTATGAGGGCACAAAAGAAAATATGAATGGACAAATAAAGGTCCCTAAAGTTACAAGTATGGAAGGAATAGAAGTAGCGGAAGGAACATCACAAGAAACAGCCAATCATCAAGAAGAAAAAGGAGAAGGCAAGGCTGAAGAACATAATGGTGATATAGCAACCATGATAAAAAAGAAACTAGATGTCAAAACACAACCACAAGCTTCAATTGATCAAGAGGCACAAACATTAGAGCAGGAAAATTTTAAGCGAAATCGACATACTCGAGCGGAGCTGGGGAAGCTGGAAACATATAGAAACACTCGGGAATTGAAAGAACCTGAAGATATAGAAATTCCATATTTGCAAAGCCCTGCACACGAGCATGAAGAAAAAGAAGTTGATCAAAAAGGAAAAAGTTTCCAAACAAAAGATGAAACTAAAGAAGCAAGAGAAGAATGCAATTCACCACAGAAGGTGACACATCAAGATTCGAGCAAGGAGGCAAAGCAAGAGAAAAAACAGTTGAAAATGCGTATTCCAATCATCGTTGCAGGGTCAGCTCTAGTCGCATCCCTTGTAATTGTTGTGTTTAGCTTGGTAAAAAGTAAAAAACGAGAGAAAAATATGAGAGGTTAA mRNA sequence ATGGATGATTCCTCACATTTTGAACTTAAGATCAGCCCTACCAGAGAGGATGATCCTTCCTCAACCTTTGAGCTTCACTTGCTCAAGACCACTTCCACTCATTCTTTCTTCTCTGATGAAACCAATTCCATGTTCCTTCTCACTGCCAAACTCCCAGGTTTTGCAAGAGACGACATTGTGATAACTATCAATGGAAGCGGTACTCGGATCGAGATTAGTTGGGGACAACCTGTTCAGAAAATGGAGATTACGAGATGGACGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATCTTTCGAATTCCAGATGGTGTGATTTTGGATGAAATCAAGGCCACTTATAATGATGAAAAGTCCATTTTGAAGATTTTGATGCCCAAATTGGAGGAGGGGATCCTTGGAGTAGGAATTCAAGAAGTGAAGGAAAAGGAAGCTGGCGAAGCCACGTTTGAATCTCAGGATTCTGAAGCTGAGGCGATTCCACATACACCTACAGACCTTGAGACTCCGGAAACGGGCAAAGAGACCAAATTAATTGAAGATACTCATGGAAATGGAGAATTTGGAGGAGAAAATGCCAAGCGGGAAGCATTTTCCAAGATGGAATATGCAGCAGAAACAACCCCAGAAGAGATCGAGAAGCTGAAGGGCAATGAGATGGAAGATACCGATGGAGGTTCCAATGACTACTCTGAATGTGAACAACTAGAAACAGGAGCAACAAAAGCTACAGAGTATGAGGGCACAAAAGAAAATATGAATGGACAAATAAAGGTCCCTAAAGTTACAAGTATGGAAGGAATAGAAGTAGCGGAAGGAACATCACAAGAAACAGCCAATCATCAAGAAGAAAAAGGAGAAGGCAAGGCTGAAGAACATAATGGTGATATAGCAACCATGATAAAAAAGAAACTAGATGTCAAAACACAACCACAAGCTTCAATTGATCAAGAGGCACAAACATTAGAGCAGGAAAATTTTAAGCGAAATCGACATACTCGAGCGGAGCTGGGGAAGCTGGAAACATATAGAAACACTCGGGAATTGAAAGAACCTGAAGATATAGAAATTCCATATTTGCAAAGCCCTGCACACGAGCATGAAGAAAAAGAAGTTGATCAAAAAGGAAAAAGTTTCCAAACAAAAGATGAAACTAAAGAAGCAAGAGAAGAATGCAATTCACCACAGAAGGTGACACATCAAGATTCGAGCAAGGAGGCAAAGCAAGAGAAAAAACAGTTGAAAATGCGTATTCCAATCATCGTTGCAGGGTCAGCTCTAGTCGCATCCCTTGTAATTGTTGTGTTTAGCTTGGTAAAAAGTAAAAAACGAGAGAAAAATATGAGAGGTTAA Coding sequence (CDS) ATGGATGATTCCTCACATTTTGAACTTAAGATCAGCCCTACCAGAGAGGATGATCCTTCCTCAACCTTTGAGCTTCACTTGCTCAAGACCACTTCCACTCATTCTTTCTTCTCTGATGAAACCAATTCCATGTTCCTTCTCACTGCCAAACTCCCAGGTTTTGCAAGAGACGACATTGTGATAACTATCAATGGAAGCGGTACTCGGATCGAGATTAGTTGGGGACAACCTGTTCAGAAAATGGAGATTACGAGATGGACGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATCTTTCGAATTCCAGATGGTGTGATTTTGGATGAAATCAAGGCCACTTATAATGATGAAAAGTCCATTTTGAAGATTTTGATGCCCAAATTGGAGGAGGGGATCCTTGGAGTAGGAATTCAAGAAGTGAAGGAAAAGGAAGCTGGCGAAGCCACGTTTGAATCTCAGGATTCTGAAGCTGAGGCGATTCCACATACACCTACAGACCTTGAGACTCCGGAAACGGGCAAAGAGACCAAATTAATTGAAGATACTCATGGAAATGGAGAATTTGGAGGAGAAAATGCCAAGCGGGAAGCATTTTCCAAGATGGAATATGCAGCAGAAACAACCCCAGAAGAGATCGAGAAGCTGAAGGGCAATGAGATGGAAGATACCGATGGAGGTTCCAATGACTACTCTGAATGTGAACAACTAGAAACAGGAGCAACAAAAGCTACAGAGTATGAGGGCACAAAAGAAAATATGAATGGACAAATAAAGGTCCCTAAAGTTACAAGTATGGAAGGAATAGAAGTAGCGGAAGGAACATCACAAGAAACAGCCAATCATCAAGAAGAAAAAGGAGAAGGCAAGGCTGAAGAACATAATGGTGATATAGCAACCATGATAAAAAAGAAACTAGATGTCAAAACACAACCACAAGCTTCAATTGATCAAGAGGCACAAACATTAGAGCAGGAAAATTTTAAGCGAAATCGACATACTCGAGCGGAGCTGGGGAAGCTGGAAACATATAGAAACACTCGGGAATTGAAAGAACCTGAAGATATAGAAATTCCATATTTGCAAAGCCCTGCACACGAGCATGAAGAAAAAGAAGTTGATCAAAAAGGAAAAAGTTTCCAAACAAAAGATGAAACTAAAGAAGCAAGAGAAGAATGCAATTCACCACAGAAGGTGACACATCAAGATTCGAGCAAGGAGGCAAAGCAAGAGAAAAAACAGTTGAAAATGCGTATTCCAATCATCGTTGCAGGGTCAGCTCTAGTCGCATCCCTTGTAATTGTTGTGTTTAGCTTGGTAAAAAGTAAAAAACGAGAGAAAAATATGAGAGGTTAA Protein sequence MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIVITINGSGTRIEISWGQPVQKMEITRWTYKKETETRRFKKIFRIPDGVILDEIKATYNDEKSILKILMPKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKLIEDTHGNGEFGGENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLETGATKATEYEGTKENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIATMIKKKLDVKTQPQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIPYLQSPAHEHEEKEVDQKGKSFQTKDETKEAREECNSPQKVTHQDSSKEAKQEKKQLKMRIPIIVAGSALVASLVIVVFSLVKSKKREKNMRG
Homology
BLAST of CmoCh01G010100 vs. ExPASy TrEMBL
Match: A0A6J1EKH3 (neurofilament medium polypeptide-like OS=Cucurbita moschata OX=3662 GN=LOC111433395 PE=3 SV=1) HSP 1 Score: 721.8 bits (1862), Expect = 1.7e-204 Identity = 377/388 (97.16%), Postives = 381/388 (98.20%), Query Frame = 0
Query: 1 MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIV 60
MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIV
Sbjct: 1 MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIV 60
Query: 61 ITINGSGTRIEISWGQPVQKMEITRWTYKKETETRRFKKIFRIPDGVILDEIKATYNDEK 120
ITINGSGTRIEISWGQPVQKMEITRWTYKKETETRRFKKIFRIPDGVILDEIKATYNDEK
Sbjct: 61 ITINGSGTRIEISWGQPVQKMEITRWTYKKETETRRFKKIFRIPDGVILDEIKATYNDEK 120
Query: 121 SILKILMPKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKL 180
SILKILMPKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKL
Sbjct: 121 SILKILMPKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKL 180
Query: 181 IEDTHGNGEFGGENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLET 240
IEDTHGNGEFGGENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLET
Sbjct: 181 IEDTHGNGEFGGENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLET 240
Query: 241 GATKATEYEGTKENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIA 300
GATKATEYEGTKENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIA
Sbjct: 241 GATKATEYEGTKENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIA 300
Query: 301 TMIKKKLDVKTQPQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIP 360
TMIKKKLDVKTQPQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIP
Sbjct: 301 TMIKKKLDVKTQPQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIP 360
Query: 361 YLQSPAHEHEEKEVDQKGKSFQTKDETK 389
YLQSPAHEHEEKE+ + K+ Q+ TK
Sbjct: 361 YLQSPAHEHEEKEISDEKKTTQSGHTTK 388
BLAST of CmoCh01G010100 vs. ExPASy TrEMBL
Match: A0A6J1J0B1 (uncharacterized protein LOC111480753 OS=Cucurbita maxima OX=3661 GN=LOC111480753 PE=3 SV=1) HSP 1 Score: 652.5 bits (1682), Expect = 1.3e-183 Identity = 345/373 (92.49%), Postives = 358/373 (95.98%), Query Frame = 0
Query: 1 MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIV 60
MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIV
Sbjct: 1 MDDSSHFELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIV 60
Query: 61 ITINGSGTRIEISWGQPVQKMEITRWTYKKETETRRFKKIFRIPDGVILDEIKATYNDEK 120
ITINGSGT+IEISWGQPVQKMEITR TYKKETETRRFKKIFRIPDGVILDEIKATYNDEK
Sbjct: 61 ITINGSGTQIEISWGQPVQKMEITRLTYKKETETRRFKKIFRIPDGVILDEIKATYNDEK 120
Query: 121 SILKILMPKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKL 180
SILKILMPKL EGILGVGI+ VKE+EAG+ATFESQDSEAEAIPH PTDLETPETGK+TKL
Sbjct: 121 SILKILMPKLVEGILGVGIEGVKEQEAGDATFESQDSEAEAIPHAPTDLETPETGKKTKL 180
Query: 181 IEDTHGNGEFGGENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLET 240
+EDTHGNGEFGGENAK+EAFSK+EYAAETTPEEIEKLKGNEMEDTDGGSNDYSE EQLET
Sbjct: 181 VEDTHGNGEFGGENAKQEAFSKIEYAAETTPEEIEKLKGNEMEDTDGGSNDYSESEQLET 240
Query: 241 GATKATEYEGTKENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIA 300
GATKATEYEGTKEN+NGQI+VPKVTSMEGIEVAEGTSQETANHQ+EK EG AEEHNGD+A
Sbjct: 241 GATKATEYEGTKENINGQIQVPKVTSMEGIEVAEGTSQETANHQKEK-EGNAEEHNGDMA 300
Query: 301 TMIKKKLDVKTQPQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIP 360
TMIKKK DVKTQPQASIDQ EQENFK+NRHTRA LGK ETYRNTRELKEPEDIEIP
Sbjct: 301 TMIKKKPDVKTQPQASIDQ-----EQENFKQNRHTRAGLGKPETYRNTRELKEPEDIEIP 360
Query: 361 YLQSPAHEHEEKE 374
YLQSPAHEHEEKE
Sbjct: 361 YLQSPAHEHEEKE 367
BLAST of CmoCh01G010100 vs. ExPASy TrEMBL
Match: A0A6J1CPW6 (uncharacterized protein LOC111013495 OS=Momordica charantia OX=3673 GN=LOC111013495 PE=3 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 6.4e-127 Identity = 284/466 (60.94%), Postives = 337/466 (72.32%), Query Frame = 0
Query: 7 FELKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIVITINGS 66
FELKISP+ S FEL L + T + F+S+ETNSMF+LTAKL GF+R+DI ITING+
Sbjct: 38 FELKISPS---SSFSNFELQLARGTPS-PFWSNETNSMFILTAKLTGFSREDIGITINGT 97
Query: 67 GTRIEISWGQPVQKMEITRWTYKKETETRRFKKIFRIPDGVILDEIKATYNDEKSILKIL 126
GTRIEI WGQPVQ+MEITRW YKKETETRRFKKIFRIPDGV+LDEIKATYNDE+SILKI+
Sbjct: 98 GTRIEIGWGQPVQRMEITRWMYKKETETRRFKKIFRIPDGVVLDEIKATYNDEESILKIV 157
Query: 127 MPKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKLIEDTHG 186
MPKL +GILGVGI+EVKE++ GE ESQDSEAE IP E ETG+ETK +ED
Sbjct: 158 MPKLVDGILGVGIEEVKEQDVGEDALESQDSEAEEIPEV---TEGFETGRETKFVEDA-A 217
Query: 187 NGEFGGENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLETGATKAT 246
NG F G NA E K EY AETT EE EKLKG+EME DG SN YSE E+ E T+
Sbjct: 218 NGVFEGANATPEPSPKREYLAETTQEETEKLKGDEMEHIDGVSNHYSESEKSEKLTTEIA 277
Query: 247 EYEGTKEN---MNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIATMI 306
E +N ++ +I +PKV S++GIE+ EGTS+ TANHQ+EKGE +E HNG IATM
Sbjct: 278 EAPKRWDNGGIVDSEIIIPKVRSVKGIELDEGTSKGTANHQKEKGEPNSEAHNGSIATMT 337
Query: 307 KKKLDVKTQPQASIDQEAQT-----LEQENFKRNRHTR--AELGKLETYRNTRELK---- 366
K+ D+K Q QA++D++ + L Q N K + + G ETYR+ E K
Sbjct: 338 NKQPDIKIQSQAAVDRDTKVPDKPELSQPNGKIQAEHKIVEQQGNKETYRSAWESKEFET 397
Query: 367 --EPEDIEIPYLQSPAHEHEEKEVDQKGKSFQTKDETKEAREECNSPQKVTHQDSSKEAK 426
EPE I PYLQSP HEHEEK V+Q+GKSFQT+DE KEAREE SPQ+ H+ S+KEAK
Sbjct: 398 NNEPEYIASPYLQSPEHEHEEKGVNQQGKSFQTQDEIKEAREESGSPQREKHEQSTKEAK 457
Query: 427 QEK----KQLKMRIPIIVAGSALVASLVIVVFSLVKSKKREKNMRG 453
QEK KQ KMR PII+AGSAL+ASL IVVF+ V+SKKREKNMRG
Sbjct: 458 QEKIQDSKQFKMRTPIIIAGSALLASLAIVVFNFVRSKKREKNMRG 495
BLAST of CmoCh01G010100 vs. ExPASy TrEMBL
Match: A0A5D3CSD6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00020 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.1e-41 Identity = 134/264 (50.76%), Postives = 163/264 (61.74%), Query Frame = 0
Query: 193 ENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLETGATKATEYEGTK 252
+NA+ E K+EY AE P+EIEKLKG+EM++
Sbjct: 37 KNAETERLHKIEYVAEIQPDEIEKLKGSEMDE---------------------------- 96
Query: 253 ENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIATMIKKKLDVKTQ 312
I VPK+ S+EGIEVAE TS+ TA+H++E + AE NGD ATMI KK VKTQ
Sbjct: 97 -----DIDVPKIRSVEGIEVAEVTSKGTASHKKET-QTNAEARNGDKATMINKKPYVKTQ 156
Query: 313 PQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIPYLQSPAHEHEEK 372
QASID+EA+ EL +LET KEPEDI PYLQ PA++H+EK
Sbjct: 157 SQASIDREAR---------------ELKELETD------KEPEDIGSPYLQRPANQHDEK 216
Query: 373 EVDQKGKSFQTKDETKEAREECNSPQKVTHQDSSKEAKQEK----KQLKMRIPIIVAGSA 432
D+KG+SFQTK E K+AREEC S TH+DSSKEAKQEK KQLKMR II+AGSA
Sbjct: 217 GADRKGRSFQTKYEVKDAREECKS----THEDSSKEAKQEKKQDSKQLKMRTSIIIAGSA 240
Query: 433 LVASLVIVVFSLVKSKKREKNMRG 453
L+ASLV V F+LVKS K EKN++G
Sbjct: 277 LLASLVTVAFNLVKS-KTEKNVKG 240
BLAST of CmoCh01G010100 vs. ExPASy TrEMBL
Match: A0A5A7UWU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00820 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.1e-41 Identity = 134/264 (50.76%), Postives = 163/264 (61.74%), Query Frame = 0
Query: 193 ENAKREAFSKMEYAAETTPEEIEKLKGNEMEDTDGGSNDYSECEQLETGATKATEYEGTK 252
+NA+ E K+EY AE P+EIEKLKG+EM++
Sbjct: 191 KNAETERLHKIEYVAEIQPDEIEKLKGSEMDE---------------------------- 250
Query: 253 ENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIATMIKKKLDVKTQ 312
I VPK+ S+EGIEVAE TS+ TA+H++E + AE NGD ATMI KK VKTQ
Sbjct: 251 -----DIDVPKIRSVEGIEVAEVTSKGTASHKKET-QTNAEARNGDKATMINKKPYVKTQ 310
Query: 313 PQASIDQEAQTLEQENFKRNRHTRAELGKLETYRNTRELKEPEDIEIPYLQSPAHEHEEK 372
QASID+EA+ EL +LET KEPEDI PYLQ PA++H+EK
Sbjct: 311 SQASIDREAR---------------ELKELETD------KEPEDIGSPYLQRPANQHDEK 370
Query: 373 EVDQKGKSFQTKDETKEAREECNSPQKVTHQDSSKEAKQEK----KQLKMRIPIIVAGSA 432
D+KG+SFQTK E K+AREEC S TH+DSSKEAKQEK KQLKMR II+AGSA
Sbjct: 371 GADRKGRSFQTKYEVKDAREECKS----THEDSSKEAKQEKKQDSKQLKMRTSIIIAGSA 394
Query: 433 LVASLVIVVFSLVKSKKREKNMRG 453
L+ASLV V F+LVKS K EKN++G
Sbjct: 431 LLASLVTVAFNLVKS-KTEKNVKG 394
BLAST of CmoCh01G010100 vs. TAIR 10
Match: AT1G76770.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 112.1 bits (279), Expect = 1.2e-24 Identity = 77/211 (36.49%), Postives = 112/211 (53.08%), Query Frame = 0
Query: 9 LKISPTREDDPSSTFELHLLKTTSTHSFFSDETNSMFLLTAKLPGFARDDIVITINGSGT 68
LKI+ T+ DD SS+ + + + + H S ETNS+F L L GF +D I I IN G
Sbjct: 7 LKITRTK-DDVSSSTDFRVARDSFGHRSLSRETNSVFFLILHLKGFKKDGIDIEINKEGN 66
Query: 69 RIEISWGQPVQKMEITRWT-YKKETETRRFKKIFRIPDGVILDEIKATYNDEKSILKILM 128
I+IS + V++M + +W +KKETE + FKK+FRIPD VILD+IKA +N+E L + M
Sbjct: 67 LIKISGRKQVEEMVLVKWVEWKKETEIKEFKKVFRIPDIVILDKIKARFNEEDGTLTVTM 126
Query: 129 PKLEEGILGVGIQEVKEKEAGEATFESQDSEAEAIPHTPTDLETPETGKETKLIEDTHGN 188
PK +GI G+ I+E E+E + + +E + P ET + + E
Sbjct: 127 PKKVKGITGLKIEEEDEEEEMKEPIVEEKTEEKTEPEEEIKEETKPEEENEEAEEPQREE 186
Query: 189 GEFGGENAKREAFSKMEYAAETTPEEIEKLK 219
E E R+ K E E P + + K
Sbjct: 187 EEEVVEEGTRDHEGKKEEEIEDKPRKKRRKK 216
BLAST of CmoCh01G010100 vs. TAIR 10
Match: AT1G76780.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 9.2e-09 Identity = 108/389 (27.76%), Postives = 170/389 (43.70%), Query Frame = 0
Query: 81 MEITRW-TYKKETETRRFKKIFRIPDGVILDEIKATYNDEKSILKILMPKLEEGILGVGI 140
M + RW ++KE E FKK+FRIPD V LD+IKA ++D+ + L I MPK +GI G I
Sbjct: 1 MVMIRWMAWRKEVEFSVFKKVFRIPDTVDLDKIKARFDDDDATLTITMPKRVKGISGFKI 60
Query: 141 QEVKEKEAGEATFESQD-SEAEAIPHTPT-DLETPETGKETKL---IEDTHGNGEFGGEN 200
+E +E+E E E D SEAE T +L+ K ++ IE+ G + E+
Sbjct: 61 EEEEEEEEEEE--ERVDVSEAEHKEETEKGELKDDYLEKSHQIDERIEEEKGLADSNKES 120
Query: 201 A-----KREAFSKMEYAAETTPEEIE---KLKGNEMEDTDG-GSNDYSECEQLETGATKA 260
K E +T EE E +L E +D+D GS + E E+ E+
Sbjct: 121 VDSSLRKPPDIEGRECHEQTRHEEQENNKQLVQAESDDSDDFGSRAFEEIEEQESDVLDR 180
Query: 261 TEYEGTKENMNGQIKVPKVTSMEGIEVAEGTSQETANHQEEKGEGKAEEHNGDIATMIKK 320
T G E + ++GIE E ++E+ + GE E + M KK
Sbjct: 181 TSTSGAMEKEMTDDVGDGLRKVQGIEEPERHNEESKISEMVDGETSGHEKK-KVVKMDKK 240
Query: 321 KLDVKTQPQASI----------------DQEAQT-LEQENFKRNRHTRAELGKLETYRNT 380
DVK + ++ D+ A+T E F+ ++ E+ K+ NT
Sbjct: 241 NRDVKEEVDGAMGEGFRPNIDRTQVVGDDEIAETEKNDEEFESDKLEADEVDKINEGGNT 300
Query: 381 RELKEPEDIEIPYLQSPAHEHEEKEVDQKGKSFQ------TKDETKEAR----------- 421
+ + ED + LQ +H + +QKG S + +++T EA
Sbjct: 301 KVRRHSEDRNLIKLQEKEEQHSK---EQKGHSKEENMKELVEEKTPEAETTIRNDILGPG 360
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EKH3 | 1.7e-204 | 97.16 | neurofilament medium polypeptide-like OS=Cucurbita moschata OX=3662 GN=LOC111433... | [more] |
| A0A6J1J0B1 | 1.3e-183 | 92.49 | uncharacterized protein LOC111480753 OS=Cucurbita maxima OX=3661 GN=LOC111480753... | [more] |
| A0A6J1CPW6 | 6.4e-127 | 60.94 | uncharacterized protein LOC111013495 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
| A0A5D3CSD6 | 1.1e-41 | 50.76 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UWU5 | 1.1e-41 | 50.76 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G76770.1 | 1.2e-24 | 36.49 | HSP20-like chaperones superfamily protein | [more] |
| AT1G76780.1 | 9.2e-09 | 27.76 | HSP20-like chaperones superfamily protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002068 | Alpha crystallin/Hsp20 domain | PFAM | PF00011 | HSP20 | coord: 40..132
e-value: 1.3E-7
score: 31.7 |
| IPR002068 | Alpha crystallin/Hsp20 domain | PROSITE | PS01031 | SHSP | coord: 27..145
score: 11.619164 |
| IPR008978 | HSP20-like chaperone | GENE3D | 2.60.40.790 | | coord: 12..134
e-value: 1.2E-13
score: 53.0 |
| IPR008978 | HSP20-like chaperone | SUPERFAMILY | 49764 | HSP20-like chaperones | coord: 38..132 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 148..175 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 324..415 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 206..235 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 206..225 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 280..305 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 273..415 |
| None | No IPR available | PANTHER | PTHR43670:SF34 | HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN | coord: 8..446 |
| None | No IPR available | CDD | cd06464 | ACD_sHsps-like | coord: 40..129
e-value: 5.58985E-13
score: 62.5716 |
| IPR045045 | Small heat shock protein RTM2-like | PANTHER | PTHR43670 | HEAT SHOCK PROTEIN 26 | coord: 8..446 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
|
