CmoCh01G010020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G010020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	basic blue protein-like
Location	Cmo_Chr01: 7074577 .. 7075694 (-)
RNA-Seq Expression	CmoCh01G010020
Synteny	CmoCh01G010020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGACACGAGGGGAGCAGCGGAGCGGTTTCGATGAGCACGGTGGCTGTTGCAATGGCATTGCTGCTGCTTGGCTTTGAACATGGCGATGCTGCTACAACTTTTGTTGTTGGCGACTTGAACGGATGGAACCTGGGCGTGGAGGGATGGCTGAATGGGAAGGTGTTTAGAGCCGGTGACATATTAAGTGAGTTTTCAACTCTCATTTTGATCGTTGAATAGTAACTGATGTTTTACTTGTGTAATCGTATCTATTAAGATTGATGCTCTGATACTATGTTAAGAATGAAAAACAGAAGTGGGATCGAGAGTCCGAGAAAAGAGAAAATATTCTACTAACCAAATTCTTAAGATAAGATAAAATATATCAAAACACAAGTCTACTAGCAGACGCATTTTAAAGCCTTGAGGGGAAACCTGAAAGGGAAAGCCCAATGAGGATCTGGGTCACATTATGACTATATAAAATATATTCCAATAGTATCCTATCGAATTCGCAGTTAGATCATTAATAATAAATGAAACGAATACATACTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGATTCAACTATAACCCGACAGTTCACAATGTGGTGGCAGTGGACGACGGGGGTATAGAAGCTGCATAG

mRNA sequence

ATGGCTCGACACGAGGGGAGCAGCGGAGCGGTTTCGATGAGCACGGTGGCTGTTGCAATGGCATTGCTGCTGCTTGGCTTTGAACATGGCGATGCTGCTACAACTTTTGTTGTTGGCGACTTGAACGGATGGAACCTGGGCGTGGAGGGATGGCTGAATGGGAAGGTGTTTAGAGCCGGTGACATATTAAGATTCAACTATAACCCGACAGTTCACAATGTGGTGGCAGTGGACGACGGGGGTATAGAAGCTGCATAG

Coding sequence (CDS)

ATGGCTCGACACGAGGGGAGCAGCGGAGCGGTTTCGATGAGCACGGTGGCTGTTGCAATGGCATTGCTGCTGCTTGGCTTTGAACATGGCGATGCTGCTACAACTTTTGTTGTTGGCGACTTGAACGGATGGAACCTGGGCGTGGAGGGATGGCTGAATGGGAAGGTGTTTAGAGCCGGTGACATATTAAGATTCAACTATAACCCGACAGTTCACAATGTGGTGGCAGTGGACGACGGGGGTATAGAAGCTGCATAG

Protein sequence

MARHEGSSGAVSMSTVAVAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRAGDILRFNYNPTVHNVVAVDDGGIEAA

Homology

[Close]

BLAST of CmoCh01G010020 vs. ExPASy Swiss-Prot
Match: P60496 (Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-12
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 5  EGSSGAVSMSTVAVAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRAGDILR 64
          +GS  A     + V +  L+   E  + +  + VGD  GW  G  GW  GK FRAGD+L 
Sbjct: 3  QGSGSAERALVLGVVLVFLVFNCEVAE-SVVYTVGDGGGWTFGTSGWPAGKTFRAGDVLV 62

Query: 65 FNYNPTVHNVVAVDDGGIEA 85
          F YNP VHNVV+V  GG ++
Sbjct: 63 FKYNPAVHNVVSVPAGGYKS 81

[Close]

BLAST of CmoCh01G010020 vs. ExPASy Swiss-Prot
Match: Q8LG89 (Basic blue protein OS=Arabidopsis thaliana OX=3702 GN=ARPN PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-11
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVA-VAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRA 60
          MA+  GS+   + + V  +A+++LLL  ++  AA T+ VGD   W     GW  GK FRA
Sbjct: 1  MAKGRGSASWSARAIVTLMAVSVLLLQADYVQAA-TYTVGDSGIWTFNAVGWPKGKHFRA 60

Query: 61 GDILRFNYNPTVHNVVAVDDG 81
          GD+L FNYNP +HNVV VD G
Sbjct: 61 GDVLVFNYNPRMHNVVKVDSG 80

[Close]

BLAST of CmoCh01G010020 vs. ExPASy Swiss-Prot
Match: P00303 (Basic blue protein OS=Cucumis sativus OX=3659 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 36 FVVGDLNGWNLGVEGWLNGKVFRAGDILRFNYNPTVHNVVAVDDGG 82
          +VVG   GW    E W  GK FRAGDIL FNYNP +HNVV V+ GG
Sbjct: 3  YVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGG 48

[Close]

BLAST of CmoCh01G010020 vs. ExPASy Swiss-Prot
Match: A0A072U307 (Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 32 AATTFVVGDLNGWNLGVE--GWLNGKVFRAGDILRFNYNPTVHNVVAVD 79
          AAT ++VGD  GW +  +   W   KVFR GD L FNY+P+ HNV  V+
Sbjct: 23 AATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKVN 71

[Close]

BLAST of CmoCh01G010020 vs. ExPASy Swiss-Prot
Match: G7L0H3 (Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.3e-05
Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 11 VSMSTVAVAMALLLLGFEHGDAATTFVVGDLNGWNLGVE--GWLNGKVFRAGDILRFNYN 70
          ++ S V + +++ ++       AT  +VGD  GW +  +   W   KVFR GD L FNY+
Sbjct: 1  MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYD 60

Query: 71 PTVHNVVAVD 79
          P  HNV  V+
Sbjct: 61 PARHNVFKVN 70

[Close]

BLAST of CmoCh01G010020 vs. ExPASy TrEMBL
Match: A0A6J1EKP0 (chemocyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111433464 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.9e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVAVAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRAG 60
          MARHEGSSGAVSMSTVAVAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRAG
Sbjct: 1  MARHEGSSGAVSMSTVAVAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRAG 60

Query: 61 DILRFNYNPTVHNVVAVDDGGIEAA 86
          DILRFNYNPTVHNVVAVDDGGIEAA
Sbjct: 61 DILRFNYNPTVHNVVAVDDGGIEAA 85

[Close]

BLAST of CmoCh01G010020 vs. ExPASy TrEMBL
Match: A0A6J1FMC7 (basic blue protein-like OS=Cucurbita moschata OX=3662 GN=LOC111446527 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVAVAMA-LLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRA 60
          MARHEGSSGAVSMSTVAVAMA LLLLGFEHGDAATTFVVGD NGWNLG EGW NGKVFRA
Sbjct: 1  MARHEGSSGAVSMSTVAVAMALLLLLGFEHGDAATTFVVGDSNGWNLGTEGWPNGKVFRA 60

Query: 61 GDILRFNYNPTVHNVVAVDDGG 82
          GDILRFNYNPTVHNVVAVD+GG
Sbjct: 61 GDILRFNYNPTVHNVVAVDEGG 82

[Close]

BLAST of CmoCh01G010020 vs. ExPASy TrEMBL
Match: A0A6J1J2N8 (basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111480706 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVAVAMA-LLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRA 60
          MARHEGSSGAVSMSTVAVAMA LLLLGFEHGDAATTFVVGD NGWNLG EGW NGKVFRA
Sbjct: 1  MARHEGSSGAVSMSTVAVAMALLLLLGFEHGDAATTFVVGDSNGWNLGTEGWPNGKVFRA 60

Query: 61 GDILRFNYNPTVHNVVAVDDGG 82
          GDILRFNYNPTVHNVVAVD+GG
Sbjct: 61 GDILRFNYNPTVHNVVAVDEGG 82

[Close]

BLAST of CmoCh01G010020 vs. ExPASy TrEMBL
Match: A0A6J1J2F7 (basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111480707 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVAVAMA-LLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRA 60
          MARHEGSSGAVSMSTVAVAMA LLLLGFEHGDAATTFVVGD NGWNLG EGW NGKVFRA
Sbjct: 1  MARHEGSSGAVSMSTVAVAMALLLLLGFEHGDAATTFVVGDSNGWNLGTEGWPNGKVFRA 60

Query: 61 GDILRFNYNPTVHNVVAVDDGG 82
          GDILRFNYNPTVHNVVAVD+GG
Sbjct: 61 GDILRFNYNPTVHNVVAVDEGG 82

[Close]

BLAST of CmoCh01G010020 vs. ExPASy TrEMBL
Match: A0A6J1IUK3 (basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111480705 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVAVAMA-LLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRA 60
          MARHEGSSGAVSMSTVAVAMA LLLLGFEHGDAATTFVVGD NGWNLG EGW NGKVFRA
Sbjct: 1  MARHEGSSGAVSMSTVAVAMALLLLLGFEHGDAATTFVVGDSNGWNLGTEGWPNGKVFRA 60

Query: 61 GDILRFNYNPTVHNVVAVDDGG 82
          GDILRFNYNPTVHNVVAVD+GG
Sbjct: 61 GDILRFNYNPTVHNVVAVDEGG 82

[Close]

BLAST of CmoCh01G010020 vs. TAIR 10
Match: AT2G02850.1 (plantacyanin )

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MARHEGSSGAVSMSTVA-VAMALLLLGFEHGDAATTFVVGDLNGWNLGVEGWLNGKVFRA 60
          MA+  GS+   + + V  +A+++LLL  ++  AA T+ VGD   W     GW  GK FRA
Sbjct: 1  MAKGRGSASWSARAIVTLMAVSVLLLQADYVQAA-TYTVGDSGIWTFNAVGWPKGKHFRA 60

Query: 61 GDILRFNYNPTVHNVVAVDDG 81
          GD+L FNYNP +HNVV VD G
Sbjct: 61 GDVLVFNYNPRMHNVVKVDSG 80

[Close]

BLAST of CmoCh01G010020 vs. TAIR 10
Match: AT3G60270.1 (Cupredoxin superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 32/68 (47.06%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 14 STVAVAMALLLLGFE-HGDAATTFVVGDLNGWNLGVE--GWLNGKVFRAGDILRFNYNPT 73
          ST A A+ LLLL        A TF VGD +GW +GVE   W++ K FR GD L F Y P+
Sbjct: 3  STAATALLLLLLLVAVPAVFAVTFQVGDNDGWTIGVEYTSWVSEKTFRVGDTLEFKYGPS 62

Query: 74 VHNVVAVD 79
           H+V  V+
Sbjct: 63 -HSVAVVN 69

[Close]

BLAST of CmoCh01G010020 vs. TAIR 10
Match: AT1G17800.1 (early nodulin-like protein 22 )

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-06
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 7  SSGAVSMSTVAVAMALLLL--------GFEHGDAATTFVVGDLNGWN--LGVEGWLNGKV 66
          SSG VS   V V +A+++            +    TT++VG  +GW+  + ++ W  GK 
Sbjct: 4  SSGHVSYVAVTVPIAIVMTVLCLFLANAVTYARRPTTYIVGGDDGWDPVVPMDTWARGKT 63

Query: 67 FRAGDILRFNYNPTVHNVVAVDDGGIE 84
          F AGDIL F Y+    N++ V+  G E
Sbjct: 64 FYAGDILEFKYDYQRFNLIVVNRTGYE 90

[Close]

BLAST of CmoCh01G010020 vs. TAIR 10
Match: AT3G17675.1 (Cupredoxin superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.8e-06
Identity = 21/47 (44.68%), Postives = 26/47 (55.32%), Query Frame = 0


Query: 34 TTFVVGDLNGWNL--GVEGWLNGKVFRAGDILRFNYNPTVHNVVAVD 79
          T  +VGD NGW L      W  G+ F  GD+L FNY    HNV+ V+
Sbjct: 7  TEHIVGDSNGWELFTNYTNWTQGREFHVGDVLVFNYKSDQHNVMQVN 53

The following BLAST results are available for this feature:

BLAST of CmoCh01G010020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60496	8.1e-12	42.50	Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1	[more]
Q8LG89	2.3e-11	46.91	Basic blue protein OS=Arabidopsis thaliana OX=3702 GN=ARPN PE=2 SV=2	[more]
P00303	3.4e-10	60.87	Basic blue protein OS=Cucumis sativus OX=3659 PE=1 SV=1	[more]
A0A072U307	6.6e-06	48.98	Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1	[more]
G7L0H3	7.3e-05	35.71	Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1	[more]

BLAST of CmoCh01G010020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKP0	1.9e-40	100.00	chemocyanin-like OS=Cucurbita moschata OX=3662 GN=LOC111433464 PE=4 SV=1	[more]
A0A6J1FMC7	1.2e-34	93.90	basic blue protein-like OS=Cucurbita moschata OX=3662 GN=LOC111446527 PE=4 SV=1	[more]
A0A6J1J2N8	1.2e-34	93.90	basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111480706 PE=4 SV=1	[more]
A0A6J1J2F7	1.2e-34	93.90	basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111480707 PE=4 SV=1	[more]
A0A6J1IUK3	1.2e-34	93.90	basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111480705 PE=4 SV=1	[more]

BLAST of CmoCh01G010020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02850.1	1.7e-12	46.91	plantacyanin	[more]
AT3G60270.1	1.2e-07	47.06	Cupredoxin superfamily protein	[more]
AT1G17800.1	4.0e-06	33.33	early nodulin-like protein 22	[more]
AT3G17675.1	6.8e-06	44.68	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 32..84 e-value: 5.7E-10 score: 41.3
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 33..80
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 49..79 e-value: 1.2E-7 score: 31.6
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 34..85 score: 17.033804
None	No IPR available	PANTHER	PTHR33021:SF379	BLUE PROTEIN, PUTATIVE-RELATED	coord: 13..83
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 13..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010020.1	CmoCh01G010020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity