CmoCh01G009740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G009740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribonuclease P
Location	Cmo_Chr01: 6259295 .. 6260359 (-)
RNA-Seq Expression	CmoCh01G009740
Synteny	CmoCh01G009740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGGTACATAAACCGTGTCTTTCTAAACAACATCGCAACCTCTGTATTTGTATAGCCTAATATTTGTTCTTGCCTTGGTGTTTATGTAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGTAAGTTTTTTGGTTAGGATCATCGTTTATGTTGCTGACTTCCAATTTGGGTATACACAATTGTGCTTGTACTTCAAGAATATAATCAGAATATGAATTTTGAACTTGTAAATAAGTTTAAACTCTTGTTCTGGGTAATTTCAATCCTTGTCTATTTTGTGCTGCACTGATTTGTAATAGAATTGAAGAAATGACATTGAATGAATGCGTTTTGTTTTACAGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGATTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTTTATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAAGAATGATGTTGAGAATGTTTGAGACTATGCCAAGCAGTTTTCTAAGCTTATGTCAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCAAGAAATTGAAGTTGTGAG

mRNA sequence

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGATTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTTTATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAAGAATGATGTTGAGAATGTTTGAGACTATGCCAAGCAGTTTTCTAAGCTTATGTCAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCAAGAAATTGAAGTTGTGAG

Coding sequence (CDS)

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGA

Protein sequence

MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

Homology

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BLAST of CmoCh01G009740 vs. ExPASy Swiss-Prot
Match: Q6AWV1 (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702 GN=EMB1687 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 9.7e-48
Identity = 94/155 (60.65%), Postives = 122/155 (78.71%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLD 120
           V+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD++G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           + KFEQ        +S+    QM   LEKI+ L+N
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

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BLAST of CmoCh01G009740 vs. ExPASy Swiss-Prot
Match: Q9UU90 (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-13
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPII-----ITQYNVSKAIKDSILLNFGECGFASSL 60
           MV FK+RYL+FE VL P      D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFE-VLYPEAKEFFDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTA 120
            S  V+Y +P T   I+R SR+ ++  WAA+ ++R +   PV+  ++ ++G  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LRLDELKFEQYKLMVGP 133
           +  ++ +     LM  P
Sbjct: 121 IERNKSEIHNISLMDEP 136

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BLAST of CmoCh01G009740 vs. ExPASy Swiss-Prot
Match: Q54EP3 (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=44689 GN=pop5 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-11
Identity = 36/118 (30.51%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV  KNRYL+ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRL 119
            YVNP T + IIR S E Y+++W A+T++ S    P+ F ++ + G+ R C+  A+++
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

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BLAST of CmoCh01G009740 vs. ExPASy Swiss-Prot
Match: Q969H6 (Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-10
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVL-DPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FK+RYL+ E+V  DP   ++ DD ++      S  ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISN----CPVVFNLLDLTGNSRACK 113
           VRY+N  T + ++R  +E YQ VW+A+  +  + N     P  FN L + G  R C+
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 111

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BLAST of CmoCh01G009740 vs. ExPASy Swiss-Prot
Match: Q1JQ92 (Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-09
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVL-DPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FK+RYL+ EVV  DP   +  +D ++ T       ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISN----CPVVFNLLDLTGNSRACK 113
           VRY+N  T + ++R  +E Y+ VW+A+  + S+ N     P   N L + G  R C+
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFLNTLHVGGTIRTCQ 111

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BLAST of CmoCh01G009740 vs. ExPASy TrEMBL
Match: A0A6J1EVL4 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.1e-81
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 154

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BLAST of CmoCh01G009740 vs. ExPASy TrEMBL
Match: A0A6J1IBH7 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.4e-80
Identity = 151/154 (98.05%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALR+DE
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVGPRISDGVNLQMQNCLEKIR+LDN
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLDN 154

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BLAST of CmoCh01G009740 vs. ExPASy TrEMBL
Match: A0A5D3CDD4 (Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 133/154 (86.36%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNK++ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRLD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D V +QMQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHCLPDNVKMQMQNCLEKIANLEN 154

[Close]

BLAST of CmoCh01G009740 vs. ExPASy TrEMBL
Match: A0A1S3CEI9 (Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.4e-70
Identity = 132/154 (85.71%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNK++ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRLD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D V + MQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]

BLAST of CmoCh01G009740 vs. ExPASy TrEMBL
Match: A0A6J1CLH1 (Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.7e-68
Identity = 127/153 (83.01%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           RYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL GN+RACKNTALR +E
Sbjct: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLD 154
           LKFEQYKLMVG R+SD VNLQMQNCLEKIR+ D
Sbjct: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 153

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BLAST of CmoCh01G009740 vs. NCBI nr
Match: XP_022932062.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG6607595.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037218.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 6.4e-81
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 154

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BLAST of CmoCh01G009740 vs. NCBI nr
Match: XP_022972913.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 7.1e-80
Identity = 151/154 (98.05%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALR+DE
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVGPRISDGVNLQMQNCLEKIR+LDN
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLDN 154

[Close]

BLAST of CmoCh01G009740 vs. NCBI nr
Match: XP_023524475.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 149/154 (96.75%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVSFKNRYLVFEV LDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVALDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALR+DE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVGP ISDGVNLQM NCLEKIR+LDN
Sbjct: 121 LKFEQYKLMVGPNISDGVNLQMHNCLEKIRTLDN 154

[Close]

BLAST of CmoCh01G009740 vs. NCBI nr
Match: XP_038899949.1 (probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 135/154 (87.66%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN+RACKNTALRLD+
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALRLDK 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+ D VNLQMQNCLEKI +L++
Sbjct: 121 LKFEQYKLMVGHRLPDNVNLQMQNCLEKIATLES 154

[Close]

BLAST of CmoCh01G009740 vs. NCBI nr
Match: XP_004139703.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >KGN44681.2 hypothetical protein Csa_016863 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 7.8e-71
Identity = 134/154 (87.01%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D VNLQMQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

[Close]

BLAST of CmoCh01G009740 vs. TAIR 10
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein )

HSP 1 Score: 191.0 bits (484), Expect = 6.9e-49
Identity = 94/155 (60.65%), Postives = 122/155 (78.71%), Query Frame = 0


Query: 1   MVSFKNRYLVFEVVLDPNKDVATD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLD 120
           V+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD++G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           + KFEQ        +S+    QM   LEKI+ L+N
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

The following BLAST results are available for this feature:

BLAST of CmoCh01G009740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWV1	9.7e-48	60.65	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702...	[more]
Q9UU90	2.0e-13	32.12	Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972...	[more]
Q54EP3	5.6e-11	30.51	Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=...	[more]
Q969H6	8.0e-10	34.19	Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=...	[more]
Q1JQ92	8.9e-09	33.33	Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1	[more]

BLAST of CmoCh01G009740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVL4	3.1e-81	100.00	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1	[more]
A0A6J1IBH7	3.4e-80	98.05	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1	[more]
A0A5D3CDD4	2.5e-70	86.36	Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 ...	[more]
A0A1S3CEI9	9.4e-70	85.71	Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1	[more]
A0A6J1CLH1	6.7e-68	83.01	Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1	[more]

BLAST of CmoCh01G009740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932062.1	6.4e-81	100.00	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG660759...	[more]
XP_022972913.1	7.1e-80	98.05	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]	[more]
XP_023524475.1	1.3e-78	96.75	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]	[more]
XP_038899949.1	1.6e-71	87.66	probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]	[more]
XP_004139703.1	7.8e-71	87.01	probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093...	[more]

BLAST of CmoCh01G009740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04635.1	6.9e-49	60.65	ribonuclease P family protein / Rpp14 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002759	RNase P subunit Pop5/Rpp14/Rnp2-like	PFAM	PF01900	RNase_P_Rpp14	coord: 7..115 e-value: 1.8E-25 score: 89.2
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	GENE3D	3.30.70.3250	Ribonuclease P, Pop5 subunit	coord: 1..119 e-value: 8.6E-29 score: 101.9
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 1..118
None	No IPR available	PANTHER	PTHR10993:SF12	RIBONUCLEASE P/MRP PROTEIN SUBUNIT POP5	coord: 1..138
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009740.1	CmoCh01G009740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006364	rRNA processing
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0005655	nucleolar ribonuclease P complex
cellular_component	GO:0000172	ribonuclease MRP complex
cellular_component	GO:0030677	ribonuclease P complex
molecular_function	GO:0004526	ribonuclease P activity
molecular_function	GO:0033204	ribonuclease P RNA binding