CmoCh01G009630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G009630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF3511)
Location	Cmo_Chr01: 6099615 .. 6099878 (-)
RNA-Seq Expression	CmoCh01G009630
Synteny	CmoCh01G009630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA

mRNA sequence

ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA

Protein sequence

MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDRRYGL

Homology

[Close]

BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSS SGEF F+T+SNSYNFNG   K +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSS SGEF F+T+SNSYNFNG     +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

[Close]

BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A6N2KPE9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS108410 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.8e-28
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSSS SGEFGFE QS+SYNFNG  +KG+GFS+S+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDQSSSYNFNGPCQKGNGFSTSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          ME K+KSS +NSFKWIK+KFSD RYG+
Sbjct: 61 MEGKLKSSARNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: KAG6607585.1 (hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSDRRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: KAG7037209.1 (hypothetical protein SDJN02_00832, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEK KTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN
Sbjct: 1  MEKRKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSDRRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.3e-33
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 4.5e-31
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSS SGEF F+T+SNSYNFNG   K +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-15
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1  MEKSKTFPKYSSS-TSGEFGF-ETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNV 60
          M+ SK++ +YSSS ++ EFG+ + +SNSYNFNG          + DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPC-------INTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS 82
          F  E K+KS++KNSFKWIK KFS
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFS 77

[Close]

BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 10  YSSSTSGEFGFET----QSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFNMENKV 69
           YS+ST   +   T     SN+ +   +  K  GF    + E+QRK+R+ASYNV+ +E +V
Sbjct: 45  YSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRV 104

Query: 70  KSSVKNSFKWIKTKFSDRRYGL 88
           K S+K SFKW K   S+  YGL
Sbjct: 105 KGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 10  YSSSTSGEF-----GFETQSNSYNFNGSAEKGSGFSSS---ADPELQRKRRIASYNVFNM 69
           Y  +  G+F      + T+ N+  ++   EK    S S    DPELQRK+R+ASY ++ +
Sbjct: 20  YHGNQGGDFRSYSASYGTRENNI-YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGV 79

Query: 70  ENKVKSSVKNSFKWIKTKFSDRRYG 87
           E KVK S +NSF+W+K +++   YG
Sbjct: 80  EGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 34  EKGSGFSSSA----DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTK 80
           +KG   SSS+    DP+LQRK+R+ SY  + +E K+K S + SFKWIK K
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

[Close]

BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT3G13910.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 44.7 bits (104), Expect = 4.5e-05
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 11 SSSTSGEFGFETQSNSYNFN-------GSAEKGSGFS-SSADPELQRKRRIASYNVFNME 70
          S S     G ++Q+N Y           +A++ +  S S +DPE +RKRR+A Y V+++E
Sbjct: 22 SGSFDDSAGDQSQTNDYQLKIKKSKSVPNADRAASRSWSFSDPESRRKRRVAGYKVYSVE 81

Query: 71 NKVKSSVKNSFKWIK 78
           K+K S++ SFKW K
Sbjct: 82 QKMKGSIRKSFKWFK 96

The following BLAST results are available for this feature:

BLAST of CmoCh01G009630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G009630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Y3	3.0e-33	88.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1	[more]
A0A5A7T8F8	4.0e-33	88.51	Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuw...	[more]
A0A6J1EWA0	2.2e-31	85.06	uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC1114366...	[more]
A0A6J1ICY9	1.2e-29	82.76	uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683...	[more]
A0A6N2KPE9	3.8e-28	75.86	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS108410 PE=4 SV=...	[more]

BLAST of CmoCh01G009630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607585.1	2.9e-38	100.00	hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037209.1	1.1e-37	98.85	hypothetical protein SDJN02_00832, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN45893.1	6.3e-33	88.51	hypothetical protein Csa_005289 [Cucumis sativus]	[more]
KAA0039168.1	8.2e-33	88.51	Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]	[more]
XP_022930185.1	4.5e-31	85.06	uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothet...	[more]

BLAST of CmoCh01G009630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	6.3e-15	53.01	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	1.5e-08	41.46	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	4.8e-07	37.65	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.8e-06	50.00	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	4.5e-05	37.33	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..86 e-value: 1.1E-22 score: 79.6
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 1..82
None	No IPR available	PANTHER	PTHR33193:SF7	OS06G0686600 PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009630.1	CmoCh01G009630.1	mRNA