
CmoCh01G009630 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDRRYGL Homology
BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0
BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0
BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31 Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0
BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29 Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 0
BLAST of CmoCh01G009630 vs. ExPASy TrEMBL
Match: A0A6N2KPE9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS108410 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.8e-28 Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0
BLAST of CmoCh01G009630 vs. NCBI nr
Match: KAG6607585.1 (hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of CmoCh01G009630 vs. NCBI nr
Match: KAG7037209.1 (hypothetical protein SDJN02_00832, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of CmoCh01G009630 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus]) HSP 1 Score: 150.6 bits (379), Expect = 6.3e-33 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0
BLAST of CmoCh01G009630 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]) HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0
BLAST of CmoCh01G009630 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 144.4 bits (363), Expect = 4.5e-31 Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0
BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 77.4 bits (189), Expect = 6.3e-15 Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0
BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07 Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 0
BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06 Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of CmoCh01G009630 vs. TAIR 10
Match: AT3G13910.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 44.7 bits (104), Expect = 4.5e-05 Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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